Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:42:12 (2708013): wrapper (7.7.26015): starting
06:42:12 (2708013): wrapper: running run_atlas (--nthreads 4)
[2024-05-09 06:42:12] Arguments: --nthreads 4
[2024-05-09 06:42:12] Threads: 4
[2024-05-09 06:42:12] Checking for CVMFS
[2024-05-09 06:42:12] No cvmfs_config command found, will try listing directly
[2024-05-09 06:42:12] CVMFS is ok
[2024-05-09 06:42:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-09 06:42:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-09 06:42:12] Further information can be found at the LHC@home message board.
[2024-05-09 06:42:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-09 06:42:12] Checking for apptainer binary...
[2024-05-09 06:42:12] which: no apptainer in ((null))
[2024-05-09 06:42:12] apptainer is not installed, using version from CVMFS
[2024-05-09 06:42:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-09 06:42:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut11.grid.cesnet.cz
[2024-05-09 06:42:13] apptainer works
[2024-05-09 06:42:13] Set ATHENA_PROC_NUMBER=4
[2024-05-09 06:42:13] Set ATHENA_CORE_NUMBER=4
[2024-05-09 06:42:13] Starting ATLAS job with PandaID=6192138453
[2024-05-09 06:42:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-09 08:53:58]  *** The last 200 lines of the pilot log: ***
[2024-05-09 08:53:58]  lfn=log.38204375._012452.job.log.tgz.1
[2024-05-09 08:53:58]  mtime=0
[2024-05-09 08:53:58]  protocol_id=None
[2024-05-09 08:53:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-05-09 08:53:58]  replicas=None
[2024-05-09 08:53:58]  scope=mc23_13p6TeV
[2024-05-09 08:53:58]  status=None
[2024-05-09 08:53:58]  status_code=0
[2024-05-09 08:53:58]  storage_token=
[2024-05-09 08:53:58]  surl=/scratch/boinc/var/slot28/slots/3/PanDA_Pilot-6192138453/log.38204375._012452.job.log.tgz.1
[2024-05-09 08:53:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/cf/log.38204375._012452.job.log.tgz.1
[2024-05-09 08:53:58]  workdir=None
[2024-05-09 08:53:58] ]
[2024-05-09 08:53:58] 2024-05-09 06:53:23,362 | INFO     | transferring file log.38204375._012452.job.log.tgz.1 from /scratch/boinc/var/slot28/slots/3/PanDA_Pilot-6192138453/log.38204375._012452.job.log.tgz.1 to /scratch/b
[2024-05-09 08:53:58] 2024-05-09 06:53:23,362 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot28/slots/3/PanDA_Pilot-6192138453/log.38204375._012452.job.log.tgz.1 /scratch/boinc/var/slot28/slots/3/lo
[2024-05-09 08:53:58] 2024-05-09 06:53:23,387 | INFO     | adding to output.list: log.38204375._012452.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/db/cf/log.38204375._012452.job.log.tg
[2024-05-09 08:53:58] 2024-05-09 06:53:23,388 | INFO     | summary of transferred files:
[2024-05-09 08:53:58] 2024-05-09 06:53:23,388 | INFO     |  -- lfn=log.38204375._012452.job.log.tgz.1, status_code=0, status=transferred
[2024-05-09 08:53:58] 2024-05-09 06:53:23,388 | INFO     | stage-out finished correctly
[2024-05-09 08:53:58] 2024-05-09 06:53:23,719 | WARNING  | process 2720219 is no longer using CPU - aborting
[2024-05-09 08:53:58] 2024-05-09 06:53:23,719 | INFO     | will not send any job update
[2024-05-09 08:53:58] 2024-05-09 06:53:24,966 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-05-09 08:53:58] 2024-05-09 06:53:25,693 | INFO     | job 6192138453 has state=finished
[2024-05-09 08:53:58] 2024-05-09 06:53:25,693 | INFO     | preparing for final server update for job 6192138453 in state='finished'
[2024-05-09 08:53:58] 2024-05-09 06:53:25,693 | INFO     | this job has now completed (state=finished)
[2024-05-09 08:53:58] 2024-05-09 06:53:25,694 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-09 08:53:58] 2024-05-09 06:53:25,694 | INFO     | job 6192138453 has finished - writing final server update
[2024-05-09 08:53:58] 2024-05-09 06:53:25,694 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2282805/.job.ad'
[2024-05-09 08:53:58] 2024-05-09 06:53:25,694 | INFO     | total number of processed events: 400 (read)
[2024-05-09 08:53:58] 2024-05-09 06:53:25,701 | INFO     | executing command: lscpu
[2024-05-09 08:53:58] 2024-05-09 06:53:25,762 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-05-09 08:53:58] 2024-05-09 06:53:25,763 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-09 08:53:58] 2024-05-09 06:53:25,815 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-09 08:53:58] 2024-05-09 06:53:26,223 | INFO     | monitor loop #606: job 0:6192138453 is in state 'finished'
[2024-05-09 08:53:58] 2024-05-09 06:53:26,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-09 08:53:58] 2024-05-09 06:53:28,725 | INFO     | monitor loop #607: job 0:6192138453 is in state 'finished'
[2024-05-09 08:53:58] 2024-05-09 06:53:28,726 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,229 | INFO     | monitor loop #608: job 0:6192138453 is in state 'finished'
[2024-05-09 08:53:58] 2024-05-09 06:53:31,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,633 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-09 08:53:58] 2024-05-09 06:53:31,633 | INFO     | using path: /scratch/boinc/var/slot28/slots/3/PanDA_Pilot-6192138453/memory_monitor_summary.json (trf name=prmon)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,637 | INFO     | extracted standard info from prmon json
[2024-05-09 08:53:58] 2024-05-09 06:53:31,638 | INFO     | extracted standard memory fields from prmon json
[2024-05-09 08:53:58] 2024-05-09 06:53:31,638 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-09 08:53:58] 2024-05-09 06:53:31,638 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-09 08:53:58] 2024-05-09 06:53:31,641 | INFO     | fitting pss+swap vs Time
[2024-05-09 08:53:58] 2024-05-09 06:53:31,643 | INFO     | current chi2=3.5826242315678183 (change=0.17167027110265004 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,643 | INFO     | right removable region: 123
[2024-05-09 08:53:58] 2024-05-09 06:53:31,643 | INFO     | current chi2=1.4649035731703859 (change=59.18107301487867 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,644 | INFO     | current chi2=0.05259984803325137 (change=96.40933034797551 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,645 | INFO     | current chi2=0.0021710385790064835 (change=95.87253830536916 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,645 | INFO     | current chi2=0.0006782559528875239 (change=68.75891753163091 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,646 | INFO     | current chi2=0.00036079238209889573 (change=46.80586575570735 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,646 | INFO     | current chi2=0.00017396471680082288 (change=51.78259701915271 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,647 | INFO     | current chi2=2.6358136122711736e-05 (change=84.84857354558287 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,647 | INFO     | current chi2=1.8189757072354255e-05 (change=30.989972175305375 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,648 | INFO     | current chi2=1.3588160220969043e-05 (change=25.29773670468068 %)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,648 | INFO     | left removable region not found
[2024-05-09 08:53:58] 2024-05-09 06:53:31,649 | INFO     | current memory leak: 81.68 B/s (using 123 data points, chi2=3.58)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,649 | INFO     | ..............................
[2024-05-09 08:53:58] 2024-05-09 06:53:31,649 | INFO     | . Timing measurements:
[2024-05-09 08:53:58] 2024-05-09 06:53:31,649 | INFO     | . get job = 0 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,649 | INFO     | . initial setup = 1 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,649 | INFO     | . payload setup = 5 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,649 | INFO     | . stage-in = 0 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,650 | INFO     | . payload execution = 7835 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,650 | INFO     | . stage-out = 0 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,650 | INFO     | . log creation = 0 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,650 | INFO     | ..............................
[2024-05-09 08:53:58] 2024-05-09 06:53:31,720 | INFO     | 
[2024-05-09 08:53:58] 2024-05-09 06:53:31,720 | INFO     | job summary report
[2024-05-09 08:53:58] 2024-05-09 06:53:31,720 | INFO     | --------------------------------------------------
[2024-05-09 08:53:58] 2024-05-09 06:53:31,720 | INFO     | PanDA job id: 6192138453
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | task id: 38204375
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | errors: (none)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | pilot state: finished 
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | transexitcode: 0
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | exeerrorcode: 0
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | exeerrordiag: 
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | exitcode: 0
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | exitmsg: OK
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | cpuconsumptiontime: 28588 s
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | nevents: 400
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | neventsw: 0
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | pid: 2720219
[2024-05-09 08:53:58] 2024-05-09 06:53:31,721 | INFO     | pgrp: 2720219
[2024-05-09 08:53:58] 2024-05-09 06:53:31,722 | INFO     | corecount: 4
[2024-05-09 08:53:58] 2024-05-09 06:53:31,722 | INFO     | event service: False
[2024-05-09 08:53:58] 2024-05-09 06:53:31,722 | INFO     | sizes: {0: 2380832, 4: 2381038, 11: 2381066, 7845: 2417746, 7847: 2417746, 7854: 2417916}
[2024-05-09 08:53:58] 2024-05-09 06:53:31,722 | INFO     | --------------------------------------------------
[2024-05-09 08:53:58] 2024-05-09 06:53:31,722 | INFO     | 
[2024-05-09 08:53:58] 2024-05-09 06:53:31,722 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/3
[2024-05-09 08:53:58] 2024-05-09 06:53:31,738 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,739 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | job 6192138453 has completed (purged errors)
[2024-05-09 08:53:58] 2024-05-09 06:53:31,740 | INFO     | overall cleanup function is called
[2024-05-09 08:53:58] 2024-05-09 06:53:32,744 | INFO     | --- collectZombieJob: --- 10, [2720219]
[2024-05-09 08:53:58] 2024-05-09 06:53:32,744 | INFO     | zombie collector waiting for pid 2720219
[2024-05-09 08:53:58] 2024-05-09 06:53:32,744 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-09 08:53:58] 2024-05-09 06:53:33,749 | INFO     | collected zombie processes
[2024-05-09 08:53:58] 2024-05-09 06:53:33,750 | INFO     | will now attempt to kill all subprocesses of pid=2720219
[2024-05-09 08:53:58] 2024-05-09 06:53:33,908 | INFO     | process IDs to be killed: [2720219] (in reverse order)
[2024-05-09 08:53:58] 2024-05-09 06:53:34,018 | WARNING  | found no corresponding commands to process id(s)
[2024-05-09 08:53:58] 2024-05-09 06:53:34,018 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-09 08:53:58] 2024-05-09 06:53:34,033 | INFO     | did not find any defunct processes belonging to 2720219
[2024-05-09 08:53:58] 2024-05-09 06:53:34,042 | INFO     | did not find any defunct processes belonging to 2720219
[2024-05-09 08:53:58] 2024-05-09 06:53:34,042 | INFO     | ready for new job
[2024-05-09 08:53:58] 2024-05-09 06:53:34,042 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-09 08:53:58] 2024-05-09 06:53:34,043 | INFO     | *************************************
[2024-05-09 08:53:58] 2024-05-09 06:53:34,044 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-05-09 08:53:58] 2024-05-09 06:53:34,044 | INFO     | *************************************
[2024-05-09 08:53:58] 2024-05-09 06:53:34,044 | INFO     | 
[2024-05-09 08:53:58] 2024-05-09 06:53:34,051 | INFO     | architecture information:
[2024-05-09 08:53:58] 2024-05-09 06:53:34,051 | INFO     | executing command: cat /etc/os-release
[2024-05-09 08:53:58] 2024-05-09 06:53:34,066 | INFO     | cat /etc/os-release:
[2024-05-09 08:53:58] NAME="CentOS Linux"
[2024-05-09 08:53:58] VERSION="7 (Core)"
[2024-05-09 08:53:58] ID="centos"
[2024-05-09 08:53:58] ID_LIKE="rhel fedora"
[2024-05-09 08:53:58] VERSION_ID="7"
[2024-05-09 08:53:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-09 08:53:58] ANSI_COLOR="0;31"
[2024-05-09 08:53:58] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-09 08:53:58] HOME_URL="https://www.centos.org/"
[2024-05-09 08:53:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-09 08:53:58] 
[2024-05-09 08:53:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-09 08:53:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-09 08:53:58] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-09 08:53:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-09 08:53:58] 
[2024-05-09 08:53:58] 2024-05-09 06:53:34,066 | INFO     | *************************************
[2024-05-09 08:53:58] 2024-05-09 06:53:34,569 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/3
[2024-05-09 08:53:58] 2024-05-09 06:53:34,590 | INFO     | sufficient remaining disk space (3324860432384 B)
[2024-05-09 08:53:58] 2024-05-09 06:53:34,590 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-09 08:53:58] 2024-05-09 06:53:34,591 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-09 08:53:58] 2024-05-09 06:53:34,591 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-09 08:53:58] 2024-05-09 06:53:34,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-09 08:53:58] 2024-05-09 06:53:34,594 | INFO     | found 0 job(s) in 20 queues
[2024-05-09 08:53:58] 2024-05-09 06:53:34,595 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-09 08:53:58] 2024-05-09 06:53:34,595 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-09 08:53:58] 2024-05-09 06:53:34,738 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-09 08:53:58] 2024-05-09 06:53:34,738 | INFO     | aborting loop
[2024-05-09 08:53:58] 2024-05-09 06:53:34,837 | INFO     | all payload control threads have been joined
[2024-05-09 08:53:58] 2024-05-09 06:53:35,507 | INFO     | all job control threads have been joined
[2024-05-09 08:53:58] 2024-05-09 06:53:35,553 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-09 08:53:58] 2024-05-09 06:53:35,578 | INFO     | all data control threads have been joined
[2024-05-09 08:53:58] 2024-05-09 06:53:35,596 | INFO     | [job] retrieve thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:35,628 | INFO     | [payload] execute_payloads thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:35,744 | INFO     | [job] job monitor thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:35,836 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:35,842 | INFO     | [payload] control thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:35,971 | INFO     | [payload] failed_post thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,353 | INFO     | [job] validate thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,392 | INFO     | [data] copytool_in thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,508 | INFO     | [job] control thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,521 | INFO     | [payload] validate_post thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,584 | INFO     | [data] control thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,586 | INFO     | [job] create_data_payload thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,600 | INFO     | [data] copytool_out thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:36,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-09 08:53:58] 2024-05-09 06:53:36,855 | INFO     | [payload] validate_pre thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:37,736 | INFO     | [job] queue monitor thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:39,559 | INFO     | [data] queue_monitor thread has finished
[2024-05-09 08:53:58] 2024-05-09 06:53:41,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47216740983872)>', '<ExcThread(monitor, started 47216914319104)>']
[2024-05-09 08:53:58] 2024-05-09 06:53:41,615 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-09 08:53:58] 2024-05-09 06:53:41,616 | INFO     | [monitor] control thread has ended
[2024-05-09 08:53:58] 2024-05-09 06:53:46,291 | INFO     | all workflow threads have been joined
[2024-05-09 08:53:58] 2024-05-09 06:53:46,292 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-09 08:53:58] 2024-05-09 06:53:46,292 | INFO     | traces error code: 0
[2024-05-09 08:53:58] 2024-05-09 06:53:46,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-09 08:53:58] 2024-05-09 06:53:46,412 [wrapper] ==== pilot stdout END ====
[2024-05-09 08:53:58] 2024-05-09 06:53:46,415 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-09 08:53:58] 2024-05-09 06:53:46,418 [wrapper] pilotpid: 2712706
[2024-05-09 08:53:58] 2024-05-09 06:53:46,420 [wrapper] Pilot exit status: 0
[2024-05-09 08:53:58] 2024-05-09 06:53:46,435 [wrapper] pandaids: 6192138453
[2024-05-09 08:53:58] 2024-05-09 06:53:46,514 [wrapper] cleanup: SIGTERM to supervisor_pilot 3058635 2712707
[2024-05-09 08:53:58] 2024-05-09 06:53:46,518 [wrapper] Test setup, not cleaning
[2024-05-09 08:53:58] 2024-05-09 06:53:46,520 [wrapper] ==== wrapper stdout END ====
[2024-05-09 08:53:58] 2024-05-09 06:53:46,523 [wrapper] ==== wrapper stderr END ====
[2024-05-09 08:53:58] 2024-05-09 06:53:46,527 [wrapper] apfmon messages muted
[2024-05-09 08:53:58]  *** Error codes and diagnostics ***
[2024-05-09 08:53:58]     "exeErrorCode": 0,
[2024-05-09 08:53:58]     "exeErrorDiag": "",
[2024-05-09 08:53:58]     "pilotErrorCode": 0,
[2024-05-09 08:53:58]     "pilotErrorDiag": "",
[2024-05-09 08:53:58]  *** Listing of results directory ***
[2024-05-09 08:53:58] total 609712
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc    462745 May  1 00:28 pilot3.tar.gz
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc      6173 May  1 00:49 queuedata.json
[2024-05-09 08:53:58] -rwx------ 1 boinc boinc     32211 May  1 00:52 runpilot2-wrapper.sh
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc       100 May  9 05:48 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-09 08:53:58] -rwxr-xr-x 1 boinc boinc      7986 May  9 05:48 run_atlas
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc       105 May  9 05:48 job.xml
[2024-05-09 08:53:58] -rw-r--r-- 2 boinc boinc 447754273 May  9 06:42 EVNT.38204373._000436.pool.root.1
[2024-05-09 08:53:58] -rw-r--r-- 2 boinc boinc     17537 May  9 06:42 start_atlas.sh
[2024-05-09 08:53:58] drwxrwx--x 2 boinc boinc      4096 May  9 06:42 shared
[2024-05-09 08:53:58] -rw-r--r-- 2 boinc boinc    474774 May  9 06:42 input.tar.gz
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc      6643 May  9 06:42 init_data.xml
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc         0 May  9 06:42 boinc_lockfile
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc      2586 May  9 06:42 pandaJob.out
[2024-05-09 08:53:58] -rw------- 1 boinc boinc       424 May  9 06:42 setup.sh.local
[2024-05-09 08:53:58] -rw------- 1 boinc boinc   1001888 May  9 06:42 agis_schedconf.cvmfs.json
[2024-05-09 08:53:58] -rw------- 1 boinc boinc         0 May  9 06:42 agis_ddmendpoints.agis.ALL.json
[2024-05-09 08:53:58] -rw------- 1 boinc boinc   1317658 May  9 06:42 cric_ddmendpoints.json
[2024-05-09 08:53:58] drwx------ 4 boinc boinc      4096 May  9 06:42 pilot3
[2024-05-09 08:53:58] -rw------- 1 boinc boinc        95 May  9 08:52 pilot_heartbeat.json
[2024-05-09 08:53:58] -rw------- 1 boinc boinc 171009313 May  9 08:52 HITS.38204375._012452.pool.root.1
[2024-05-09 08:53:58] -rw------- 1 boinc boinc      1042 May  9 08:53 memory_monitor_summary.json
[2024-05-09 08:53:58] -rw------- 1 boinc boinc    278307 May  9 08:53 log.38204375._012452.job.log.tgz.1
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc       530 May  9 08:53 boinc_task_state.xml
[2024-05-09 08:53:58] -rw------- 1 boinc boinc      7694 May  9 08:53 heartbeat.json
[2024-05-09 08:53:58] -rw------- 1 boinc boinc      4345 May  9 08:53 pilotlog.txt
[2024-05-09 08:53:58] -rw------- 1 boinc boinc    765082 May  9 08:53 log.38204375._012452.job.log.1
[2024-05-09 08:53:58] -rw------- 1 boinc boinc       357 May  9 08:53 output.list
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc       620 May  9 08:53 runtime_log
[2024-05-09 08:53:58] -rw------- 1 boinc boinc   1064960 May  9 08:53 result.tar.gz
[2024-05-09 08:53:58] -rw------- 1 boinc boinc       656 May  9 08:53 uHGNDmZVBM5np2BDcpmwOghnABFKDmABFKDmJjxZDmmGNKDmYA93Do.diag
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc     11409 May  9 08:53 runtime_log.err
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc        27 May  9 08:53 wrapper_checkpoint.txt
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc      8192 May  9 08:53 boinc_mmap_file
[2024-05-09 08:53:58] -rw-r--r-- 1 boinc boinc     21649 May  9 08:53 stderr.txt
[2024-05-09 08:53:58] HITS file was successfully produced:
[2024-05-09 08:53:58] -rw------- 1 boinc boinc 171009313 May  9 08:52 shared/HITS.pool.root.1
[2024-05-09 08:53:58]  *** Contents of shared directory: ***
[2024-05-09 08:53:58] total 605800
[2024-05-09 08:53:58] -rw-r--r-- 2 boinc boinc 447754273 May  9 06:42 ATLAS.root_0
[2024-05-09 08:53:58] -rw-r--r-- 2 boinc boinc     17537 May  9 06:42 start_atlas.sh
[2024-05-09 08:53:58] -rw-r--r-- 2 boinc boinc    474774 May  9 06:42 input.tar.gz
[2024-05-09 08:53:58] -rw------- 1 boinc boinc 171009313 May  9 08:52 HITS.pool.root.1
[2024-05-09 08:53:58] -rw------- 1 boinc boinc   1064960 May  9 08:53 result.tar.gz
08:54:00 (2708013): run_atlas exited; CPU time 28445.599481
08:54:00 (2708013): called boinc_finish(0)

</stderr_txt>
]]>

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