Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:49:34 (1710490): wrapper (7.7.26015): starting
14:49:34 (1710490): wrapper: running run_atlas (--nthreads 4)
[2024-05-15 14:49:34] Arguments: --nthreads 4
[2024-05-15 14:49:34] Threads: 4
[2024-05-15 14:49:34] Checking for CVMFS
[2024-05-15 14:49:34] No cvmfs_config command found, will try listing directly
[2024-05-15 14:49:34] CVMFS is ok
[2024-05-15 14:49:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-15 14:49:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-15 14:49:34] Further information can be found at the LHC@home message board.
[2024-05-15 14:49:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-15 14:49:34] Checking for apptainer binary...
[2024-05-15 14:49:34] which: no apptainer in ((null))
[2024-05-15 14:49:34] apptainer is not installed, using version from CVMFS
[2024-05-15 14:49:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-15 14:49:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot96/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2024-05-15 14:49:35] apptainer works
[2024-05-15 14:49:35] Set ATHENA_PROC_NUMBER=4
[2024-05-15 14:49:35] Set ATHENA_CORE_NUMBER=4
[2024-05-15 14:49:35] Starting ATLAS job with PandaID=6199655056
[2024-05-15 14:49:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot96/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 17:41:19]  *** The last 200 lines of the pilot log: ***
[2024-05-15 17:41:19] 2024-05-15 15:41:05,246 | INFO     | -- intersect: -44285157142.93637
[2024-05-15 17:41:19] 2024-05-15 15:41:05,247 | INFO     | intersect: -44285157142.93637
[2024-05-15 17:41:19] 2024-05-15 15:41:05,247 | INFO     | chi2: 1.4725040651677648
[2024-05-15 17:41:19] 2024-05-15 15:41:05,247 | INFO     | current chi2=1.4725040651677648 (change=63.07452982731697 %)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,247 | INFO     | model: linear, x: [1715778024.0, 1715778085.0, 1715778146.0, 1715778207.0, 1715778268.0, 1715778329.0, 1715778390.0, 1715778451.0, 1715778512.0, 1715778573.0, 1715
[2024-05-15 17:41:19] 2024-05-15 15:41:05,247 | INFO     | sum of square deviations: 1223016419.5
[2024-05-15 17:41:19] 2024-05-15 15:41:05,248 | INFO     | sum of deviations: 4375897403.000002
[2024-05-15 17:41:19] 2024-05-15 15:41:05,248 | INFO     | mean x: 1715782812.5
[2024-05-15 17:41:19] 2024-05-15 15:41:05,248 | INFO     | mean y: 2350544.506329114
[2024-05-15 17:41:19] 2024-05-15 15:41:05,248 | INFO     | -- intersect: -6136642713.164149
[2024-05-15 17:41:19] 2024-05-15 15:41:05,249 | INFO     | intersect: -6136642713.164149
[2024-05-15 17:41:19] 2024-05-15 15:41:05,249 | INFO     | chi2: 0.05925191344882646
[2024-05-15 17:41:19] 2024-05-15 15:41:05,249 | INFO     | current chi2=0.05925191344882646 (change=95.97611206308785 %)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,249 | INFO     | model: linear, x: [1715778329.0, 1715778390.0, 1715778451.0, 1715778512.0, 1715778573.0, 1715778634.0, 1715778695.0, 1715778756.0, 1715778817.0, 1715778878.0, 1715
[2024-05-15 17:41:19] 2024-05-15 15:41:05,249 | INFO     | sum of square deviations: 1110539892.0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,250 | INFO     | sum of deviations: 1266792123.9999993
[2024-05-15 17:41:19] 2024-05-15 15:41:05,250 | INFO     | mean x: 1715782965.0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,250 | INFO     | mean y: 2354657.8039215687
[2024-05-15 17:41:19] 2024-05-15 15:41:05,250 | INFO     | -- intersect: -1954837841.2795482
[2024-05-15 17:41:19] 2024-05-15 15:41:05,250 | INFO     | intersect: -1954837841.2795482
[2024-05-15 17:41:19] 2024-05-15 15:41:05,251 | INFO     | chi2: 0.006469086534201937
[2024-05-15 17:41:19] 2024-05-15 15:41:05,251 | INFO     | current chi2=0.006469086534201937 (change=89.08206308005727 %)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,251 | INFO     | model: linear, x: [1715778634.0, 1715778695.0, 1715778756.0, 1715778817.0, 1715778878.0, 1715778939.0, 1715779000.0, 1715779061.0, 1715779122.0, 1715779183.0, 1715
[2024-05-15 17:41:19] 2024-05-15 15:41:05,251 | INFO     | sum of square deviations: 1005179777.0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,252 | INFO     | sum of deviations: 2347848275.9999995
[2024-05-15 17:41:19] 2024-05-15 15:41:05,252 | INFO     | mean x: 1715783117.5
[2024-05-15 17:41:19] 2024-05-15 15:41:05,252 | INFO     | mean y: 2353088.108108108
[2024-05-15 17:41:19] 2024-05-15 15:41:05,252 | INFO     | -- intersect: -4005286666.081136
[2024-05-15 17:41:19] 2024-05-15 15:41:05,252 | INFO     | intersect: -4005286666.081136
[2024-05-15 17:41:19] 2024-05-15 15:41:05,252 | INFO     | chi2: 0.0036837004963506587
[2024-05-15 17:41:19] 2024-05-15 15:41:05,253 | INFO     | current chi2=0.0036837004963506587 (change=43.05686781472153 %)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,253 | INFO     | model: linear, x: [1715778939.0, 1715779000.0, 1715779061.0, 1715779122.0, 1715779183.0, 1715779244.0, 1715779305.0, 1715779366.0, 1715779427.0, 1715779488.0, 1715
[2024-05-15 17:41:19] 2024-05-15 15:41:05,253 | INFO     | sum of square deviations: 906703512.0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,254 | INFO     | sum of deviations: 2984613611.9999995
[2024-05-15 17:41:19] 2024-05-15 15:41:05,254 | INFO     | mean x: 1715783270.0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,254 | INFO     | mean y: 2352125.3286713287
[2024-05-15 17:41:19] 2024-05-15 15:41:05,254 | INFO     | -- intersect: -5645525086.030216
[2024-05-15 17:41:19] 2024-05-15 15:41:05,254 | INFO     | intersect: -5645525086.030216
[2024-05-15 17:41:19] 2024-05-15 15:41:05,254 | INFO     | chi2: 0.0004686295295006236
[2024-05-15 17:41:19] 2024-05-15 15:41:05,254 | INFO     | current chi2=0.0004686295295006236 (change=87.27829447684789 %)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,255 | INFO     | model: linear, x: [1715779244.0, 1715779305.0, 1715779366.0, 1715779427.0, 1715779488.0, 1715779549.0, 1715779610.0, 1715779671.0, 1715779732.0, 1715779793.0, 1715
[2024-05-15 17:41:19] 2024-05-15 15:41:05,255 | INFO     | sum of square deviations: 814878534.5
[2024-05-15 17:41:19] 2024-05-15 15:41:05,255 | INFO     | sum of deviations: 2521076777.5000005
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | mean x: 1715783422.5
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | mean y: 2352895.427536232
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | -- intersect: -5305949579.7853775
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | intersect: -5305949579.7853775
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | chi2: 0.00041118204074280063
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | current chi2=0.00041118204074280063 (change=12.258614778082721 %)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | left removable region: 60
[2024-05-15 17:41:19] 2024-05-15 15:41:05,256 | INFO     | model: linear, x: [1715781074.0, 1715781135.0, 1715781196.0, 1715781257.0, 1715781318.0, 1715781379.0, 1715781440.0, 1715781501.0, 1715781562.0, 1715781623.0, 1715
[2024-05-15 17:41:19] 2024-05-15 15:41:05,257 | INFO     | sum of square deviations: 329031285.5
[2024-05-15 17:41:19] 2024-05-15 15:41:05,257 | INFO     | sum of deviations: 539545854.0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,258 | INFO     | mean x: 1715784154.5
[2024-05-15 17:41:19] 2024-05-15 15:41:05,258 | INFO     | mean y: 2356586.529411765
[2024-05-15 17:41:19] 2024-05-15 15:41:05,258 | INFO     | -- intersect: -2811188105.7711945
[2024-05-15 17:41:19] 2024-05-15 15:41:05,258 | INFO     | intersect: -2811188105.7711945
[2024-05-15 17:41:19] 2024-05-15 15:41:05,258 | INFO     | chi2: 4.5586587239657536e-05
[2024-05-15 17:41:19] 2024-05-15 15:41:05,258 | INFO     | -- intersect: -2811188105.7711945
[2024-05-15 17:41:19] 2024-05-15 15:41:05,258 | INFO     | current memory leak: 1.64 B/s (using 102 data points, chi2=0.00)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,259 | INFO     | ..............................
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . Timing measurements:
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . get job = 0 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . initial setup = 1 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . payload setup = 6 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . stage-in = 0 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . payload execution = 10243 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . stage-out = 0 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | . log creation = 0 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,260 | INFO     | ..............................
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | 
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | job summary report
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | --------------------------------------------------
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | PanDA job id: 6199655056
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | task id: 38744235
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | errors: (none)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | pilot state: finished 
[2024-05-15 17:41:19] 2024-05-15 15:41:05,355 | INFO     | transexitcode: 0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | exeerrorcode: 0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | exeerrordiag: 
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | exitcode: 0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | exitmsg: OK
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | cpuconsumptiontime: 38340 s
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | nevents: 400
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | neventsw: 0
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | pid: 1723248
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | pgrp: 1723248
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | corecount: 4
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | event service: False
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | sizes: {0: 2395614, 1: 2396549, 6: 2396755, 12: 2396783, 10254: 2425569, 10255: 2434551, 10256: 2434735, 10263: 2434905}
[2024-05-15 17:41:19] 2024-05-15 15:41:05,356 | INFO     | --------------------------------------------------
[2024-05-15 17:41:19] 2024-05-15 15:41:05,357 | INFO     | 
[2024-05-15 17:41:19] 2024-05-15 15:41:05,357 | INFO     | executing command: ls -lF /scratch/boinc/var/slot96/slots/1
[2024-05-15 17:41:19] 2024-05-15 15:41:05,387 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,387 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,387 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,387 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,387 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,387 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,388 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,389 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,389 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 17:41:19] 2024-05-15 15:41:05,389 | INFO     | job 6199655056 has completed (purged errors)
[2024-05-15 17:41:19] 2024-05-15 15:41:05,389 | INFO     | overall cleanup function is called
[2024-05-15 17:41:19] 2024-05-15 15:41:06,396 | INFO     | --- collectZombieJob: --- 10, [1723248]
[2024-05-15 17:41:19] 2024-05-15 15:41:06,396 | INFO     | zombie collector waiting for pid 1723248
[2024-05-15 17:41:19] 2024-05-15 15:41:06,396 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 17:41:19] 2024-05-15 15:41:07,401 | INFO     | collected zombie processes
[2024-05-15 17:41:19] 2024-05-15 15:41:07,401 | INFO     | will now attempt to kill all subprocesses of pid=1723248
[2024-05-15 17:41:19] 2024-05-15 15:41:07,604 | INFO     | process IDs to be killed: [1723248] (in reverse order)
[2024-05-15 17:41:19] 2024-05-15 15:41:07,798 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 17:41:19] 2024-05-15 15:41:07,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 17:41:19] 2024-05-15 15:41:07,818 | INFO     | did not find any defunct processes belonging to 1723248
[2024-05-15 17:41:19] 2024-05-15 15:41:07,833 | INFO     | did not find any defunct processes belonging to 1723248
[2024-05-15 17:41:19] 2024-05-15 15:41:07,833 | INFO     | ready for new job
[2024-05-15 17:41:19] 2024-05-15 15:41:07,833 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 17:41:19] 2024-05-15 15:41:07,835 | INFO     | *************************************
[2024-05-15 17:41:19] 2024-05-15 15:41:07,835 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 17:41:19] 2024-05-15 15:41:07,835 | INFO     | *************************************
[2024-05-15 17:41:19] 2024-05-15 15:41:07,835 | INFO     | 
[2024-05-15 17:41:19] 2024-05-15 15:41:07,842 | INFO     | architecture information:
[2024-05-15 17:41:19] 2024-05-15 15:41:07,842 | INFO     | executing command: cat /etc/os-release
[2024-05-15 17:41:19] 2024-05-15 15:41:07,865 | INFO     | cat /etc/os-release:
[2024-05-15 17:41:19] NAME="CentOS Linux"
[2024-05-15 17:41:19] VERSION="7 (Core)"
[2024-05-15 17:41:19] ID="centos"
[2024-05-15 17:41:19] ID_LIKE="rhel fedora"
[2024-05-15 17:41:19] VERSION_ID="7"
[2024-05-15 17:41:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 17:41:19] ANSI_COLOR="0;31"
[2024-05-15 17:41:19] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 17:41:19] HOME_URL="https://www.centos.org/"
[2024-05-15 17:41:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 17:41:19] 
[2024-05-15 17:41:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 17:41:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 17:41:19] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 17:41:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 17:41:19] 
[2024-05-15 17:41:19] 2024-05-15 15:41:07,865 | INFO     | *************************************
[2024-05-15 17:41:19] 2024-05-15 15:41:08,368 | INFO     | executing command: df -mP /scratch/boinc/var/slot96/slots/1
[2024-05-15 17:41:19] 2024-05-15 15:41:08,392 | INFO     | sufficient remaining disk space (3109057200128 B)
[2024-05-15 17:41:19] 2024-05-15 15:41:08,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 17:41:19] 2024-05-15 15:41:08,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 17:41:19] 2024-05-15 15:41:08,609 | INFO     | all data control threads have been joined
[2024-05-15 17:41:19] 2024-05-15 15:41:08,623 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 17:41:19] 2024-05-15 15:41:08,624 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 17:41:19] 2024-05-15 15:41:08,624 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 17:41:19] 2024-05-15 15:41:08,669 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 17:41:19] 2024-05-15 15:41:08,705 | INFO     | all job control threads have been joined
[2024-05-15 17:41:19] 2024-05-15 15:41:08,808 | INFO     | all payload control threads have been joined
[2024-05-15 17:41:19] 2024-05-15 15:41:08,870 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 17:41:19] 2024-05-15 15:41:08,870 | INFO     | aborting loop
[2024-05-15 17:41:19] 2024-05-15 15:41:09,397 | INFO     | [job] retrieve thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:09,556 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:09,614 | INFO     | [data] control thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:09,710 | INFO     | [job] control thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:09,744 | INFO     | [payload] validate_post thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:09,781 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 17:41:19] 2024-05-15 15:41:09,813 | INFO     | [payload] control thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:09,875 | INFO     | [job] job monitor thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:10,213 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:10,247 | INFO     | [job] validate thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:10,270 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:10,365 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 17:41:19] 2024-05-15 15:41:10,417 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:10,812 | INFO     | [payload] failed_post thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:10,888 | INFO     | [data] copytool_in thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:11,370 | INFO     | [job] queue monitor thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:11,786 | INFO     | [data] copytool_out thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:12,675 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 17:41:19] 2024-05-15 15:41:13,725 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47477570901056)>', '<ExcThread(monitor, started 47477742413568)>']
[2024-05-15 17:41:19] 2024-05-15 15:41:14,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 17:41:19] 2024-05-15 15:41:14,654 | INFO     | [monitor] control thread has ended
[2024-05-15 17:41:19] 2024-05-15 15:41:18,750 | INFO     | all workflow threads have been joined
[2024-05-15 17:41:19] 2024-05-15 15:41:18,750 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 17:41:19] 2024-05-15 15:41:18,750 | INFO     | traces error code: 0
[2024-05-15 17:41:19] 2024-05-15 15:41:18,750 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 17:41:19] 2024-05-15 15:41:18,838 [wrapper] ==== pilot stdout END ====
[2024-05-15 17:41:19] 2024-05-15 15:41:18,840 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 17:41:19] 2024-05-15 15:41:18,842 [wrapper] pilotpid: 1715135
[2024-05-15 17:41:19] 2024-05-15 15:41:18,844 [wrapper] Pilot exit status: 0
[2024-05-15 17:41:19] 2024-05-15 15:41:18,865 [wrapper] pandaids: 6199655056
[2024-05-15 17:41:19] 2024-05-15 15:41:18,986 [wrapper] cleanup: SIGTERM to supervisor_pilot 2560361 1715136
[2024-05-15 17:41:19] 2024-05-15 15:41:18,988 [wrapper] Test setup, not cleaning
[2024-05-15 17:41:19] 2024-05-15 15:41:18,995 [wrapper] ==== wrapper stdout END ====
[2024-05-15 17:41:19] 2024-05-15 15:41:18,998 [wrapper] ==== wrapper stderr END ====
[2024-05-15 17:41:19] 2024-05-15 15:41:19,003 [wrapper] apfmon messages muted
[2024-05-15 17:41:19]  *** Error codes and diagnostics ***
[2024-05-15 17:41:19]     "exeErrorCode": 0,
[2024-05-15 17:41:19]     "exeErrorDiag": "",
[2024-05-15 17:41:19]     "pilotErrorCode": 0,
[2024-05-15 17:41:19]     "pilotErrorDiag": "",
[2024-05-15 17:41:19]  *** Listing of results directory ***
[2024-05-15 17:41:19] total 858616
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc    467845 May  9 03:36 pilot3.tar.gz
[2024-05-15 17:41:19] -rwx------ 1 boinc boinc     32251 May  9 03:39 runpilot2-wrapper.sh
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc      5633 May  9 03:43 queuedata.json
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc       100 May 15 14:49 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 17:41:19] -rwxr-xr-x 1 boinc boinc      7986 May 15 14:49 run_atlas
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc       105 May 15 14:49 job.xml
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc      6643 May 15 14:49 init_data.xml
[2024-05-15 17:41:19] -rw-r--r-- 2 boinc boinc 623134301 May 15 14:49 EVNT.38744233._000028.pool.root.1
[2024-05-15 17:41:19] -rw-r--r-- 2 boinc boinc     17537 May 15 14:49 start_atlas.sh
[2024-05-15 17:41:19] drwxrwx--x 2 boinc boinc      4096 May 15 14:49 shared
[2024-05-15 17:41:19] -rw-r--r-- 2 boinc boinc    479982 May 15 14:49 input.tar.gz
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc         0 May 15 14:49 boinc_lockfile
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc      2536 May 15 14:49 pandaJob.out
[2024-05-15 17:41:19] -rw------- 1 boinc boinc       424 May 15 14:49 setup.sh.local
[2024-05-15 17:41:19] -rw------- 1 boinc boinc   1010553 May 15 14:49 agis_schedconf.cvmfs.json
[2024-05-15 17:41:19] -rw------- 1 boinc boinc         0 May 15 14:49 agis_ddmendpoints.agis.ALL.json
[2024-05-15 17:41:19] -rw------- 1 boinc boinc   1325758 May 15 14:49 cric_ddmendpoints.json
[2024-05-15 17:41:19] drwx------ 4 boinc boinc      4096 May 15 14:49 pilot3
[2024-05-15 17:41:19] -rw------- 1 boinc boinc        95 May 15 17:40 pilot_heartbeat.json
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc       531 May 15 17:40 boinc_task_state.xml
[2024-05-15 17:41:19] -rw------- 1 boinc boinc 249812914 May 15 17:40 HITS.38744235._000701.pool.root.1
[2024-05-15 17:41:19] -rw------- 1 boinc boinc      1044 May 15 17:40 memory_monitor_summary.json
[2024-05-15 17:41:19] -rw------- 1 boinc boinc    297523 May 15 17:40 log.38744235._000701.job.log.tgz.1
[2024-05-15 17:41:19] -rw------- 1 boinc boinc      7717 May 15 17:41 heartbeat.json
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc      8192 May 15 17:41 boinc_mmap_file
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc        28 May 15 17:41 wrapper_checkpoint.txt
[2024-05-15 17:41:19] -rw------- 1 boinc boinc      4222 May 15 17:41 pilotlog.txt
[2024-05-15 17:41:19] -rw------- 1 boinc boinc   1079426 May 15 17:41 log.38744235._000701.job.log.1
[2024-05-15 17:41:19] -rw------- 1 boinc boinc       357 May 15 17:41 output.list
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc       620 May 15 17:41 runtime_log
[2024-05-15 17:41:19] -rw------- 1 boinc boinc   1392640 May 15 17:41 result.tar.gz
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc     11410 May 15 17:41 runtime_log.err
[2024-05-15 17:41:19] -rw------- 1 boinc boinc       657 May 15 17:41 CTUNDmAw7O5n7Olcko1bjSoqABFKDmABFKDmOtvXDmwBWKDmwu4bDm.diag
[2024-05-15 17:41:19] -rw-r--r-- 1 boinc boinc     21369 May 15 17:41 stderr.txt
[2024-05-15 17:41:19] HITS file was successfully produced:
[2024-05-15 17:41:19] -rw------- 1 boinc boinc 249812914 May 15 17:40 shared/HITS.pool.root.1
[2024-05-15 17:41:19]  *** Contents of shared directory: ***
[2024-05-15 17:41:19] total 854352
[2024-05-15 17:41:19] -rw-r--r-- 2 boinc boinc 623134301 May 15 14:49 ATLAS.root_0
[2024-05-15 17:41:19] -rw-r--r-- 2 boinc boinc     17537 May 15 14:49 start_atlas.sh
[2024-05-15 17:41:19] -rw-r--r-- 2 boinc boinc    479982 May 15 14:49 input.tar.gz
[2024-05-15 17:41:19] -rw------- 1 boinc boinc 249812914 May 15 17:40 HITS.pool.root.1
[2024-05-15 17:41:19] -rw------- 1 boinc boinc   1392640 May 15 17:41 result.tar.gz
17:41:21 (1710490): run_atlas exited; CPU time 38104.539277
17:41:21 (1710490): called boinc_finish(0)

</stderr_txt>
]]>

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