Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:42:49 (3165649): wrapper (7.7.26015): starting
01:42:49 (3165649): wrapper: running run_atlas (--nthreads 4)
[2024-05-16 01:42:49] Arguments: --nthreads 4
[2024-05-16 01:42:49] Threads: 4
[2024-05-16 01:42:49] Checking for CVMFS
[2024-05-16 01:42:49] No cvmfs_config command found, will try listing directly
[2024-05-16 01:42:49] CVMFS is ok
[2024-05-16 01:42:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-16 01:42:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-16 01:42:49] Further information can be found at the LHC@home message board.
[2024-05-16 01:42:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-16 01:42:49] Checking for apptainer binary...
[2024-05-16 01:42:49] which: no apptainer in ((null))
[2024-05-16 01:42:49] apptainer is not installed, using version from CVMFS
[2024-05-16 01:42:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-16 01:42:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2024-05-16 01:42:50] apptainer works
[2024-05-16 01:42:50] Set ATHENA_PROC_NUMBER=4
[2024-05-16 01:42:50] Set ATHENA_CORE_NUMBER=4
[2024-05-16 01:42:50] Starting ATLAS job with PandaID=6199655161
[2024-05-16 01:42:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-16 06:03:41]  *** The last 200 lines of the pilot log: ***
[2024-05-16 06:03:41] 2024-05-16 04:03:25,262 | INFO     | -- intersect: -36794476643.47042
[2024-05-16 06:03:41] 2024-05-16 04:03:25,262 | INFO     | intersect: -36794476643.47042
[2024-05-16 06:03:41] 2024-05-16 04:03:25,262 | INFO     | chi2: 4.102057448574097
[2024-05-16 06:03:41] 2024-05-16 04:03:25,263 | INFO     | model: linear, x: [1715816603.0, 1715816664.0, 1715816725.0, 1715816786.0, 1715816847.0, 1715816908.0, 1715816969.0, 1715817030.0, 1715817091.0, 1715817152.0, 1715
[2024-05-16 06:03:41] 2024-05-16 04:03:25,263 | INFO     | sum of square deviations: 4903347750.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,265 | INFO     | sum of deviations: 109105897530.99998
[2024-05-16 06:03:41] 2024-05-16 04:03:25,265 | INFO     | mean x: 1715824228.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,265 | INFO     | mean y: 2289865.266932271
[2024-05-16 06:03:41] 2024-05-16 04:03:25,265 | INFO     | -- intersect: -38177042286.195335
[2024-05-16 06:03:41] 2024-05-16 04:03:25,265 | INFO     | intersect: -38177042286.195335
[2024-05-16 06:03:41] 2024-05-16 04:03:25,266 | INFO     | chi2: 4.103621310878217
[2024-05-16 06:03:41] 2024-05-16 04:03:25,266 | INFO     | current chi2=4.103621310878217 (change=-0.03812385184081843 %)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,266 | INFO     | right removable region: 250
[2024-05-16 06:03:41] 2024-05-16 04:03:25,266 | INFO     | model: linear, x: [1715816908.0, 1715816969.0, 1715817030.0, 1715817091.0, 1715817152.0, 1715817213.0, 1715817274.0, 1715817335.0, 1715817396.0, 1715817457.0, 1715
[2024-05-16 06:03:41] 2024-05-16 04:03:25,266 | INFO     | sum of square deviations: 4903347750.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,268 | INFO     | sum of deviations: 51559091427.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,268 | INFO     | mean x: 1715824533.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,268 | INFO     | mean y: 2321664.701195219
[2024-05-16 06:03:41] 2024-05-16 04:03:25,268 | INFO     | -- intersect: -18039709714.704147
[2024-05-16 06:03:41] 2024-05-16 04:03:25,268 | INFO     | intersect: -18039709714.704147
[2024-05-16 06:03:41] 2024-05-16 04:03:25,269 | INFO     | chi2: 1.5622516371169568
[2024-05-16 06:03:41] 2024-05-16 04:03:25,269 | INFO     | current chi2=1.5622516371169568 (change=61.915413016460654 %)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,269 | INFO     | model: linear, x: [1715817213.0, 1715817274.0, 1715817335.0, 1715817396.0, 1715817457.0, 1715817518.0, 1715817579.0, 1715817640.0, 1715817701.0, 1715817762.0, 1715
[2024-05-16 06:03:41] 2024-05-16 04:03:25,269 | INFO     | sum of square deviations: 4616114457.5
[2024-05-16 06:03:41] 2024-05-16 04:03:25,271 | INFO     | sum of deviations: 3728385422.5
[2024-05-16 06:03:41] 2024-05-16 04:03:25,271 | INFO     | mean x: 1715824685.5
[2024-05-16 06:03:41] 2024-05-16 04:03:25,271 | INFO     | mean y: 2347060.68699187
[2024-05-16 06:03:41] 2024-05-16 04:03:25,271 | INFO     | -- intersect: -1383505869.062172
[2024-05-16 06:03:41] 2024-05-16 04:03:25,271 | INFO     | intersect: -1383505869.062172
[2024-05-16 06:03:41] 2024-05-16 04:03:25,272 | INFO     | chi2: 0.08260435020215331
[2024-05-16 06:03:41] 2024-05-16 04:03:25,272 | INFO     | current chi2=0.08260435020215331 (change=94.71248112406559 %)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,272 | INFO     | model: linear, x: [1715817518.0, 1715817579.0, 1715817640.0, 1715817701.0, 1715817762.0, 1715817823.0, 1715817884.0, 1715817945.0, 1715818006.0, 1715818067.0, 1715
[2024-05-16 06:03:41] 2024-05-16 04:03:25,272 | INFO     | sum of square deviations: 4340323240.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,274 | INFO     | sum of deviations: -1780460253.0000005
[2024-05-16 06:03:41] 2024-05-16 04:03:25,274 | INFO     | mean x: 1715824838.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,274 | INFO     | mean y: 2350059.074688797
[2024-05-16 06:03:41] 2024-05-16 04:03:25,274 | INFO     | -- intersect: 706204992.5079795
[2024-05-16 06:03:41] 2024-05-16 04:03:25,274 | INFO     | intersect: 706204992.5079795
[2024-05-16 06:03:41] 2024-05-16 04:03:25,275 | INFO     | chi2: 0.014517930228257961
[2024-05-16 06:03:41] 2024-05-16 04:03:25,275 | INFO     | current chi2=0.014517930228257961 (change=82.42473889967175 %)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,275 | INFO     | model: linear, x: [1715817823.0, 1715817884.0, 1715817945.0, 1715818006.0, 1715818067.0, 1715818128.0, 1715818189.0, 1715818250.0, 1715818311.0, 1715818372.0, 1715
[2024-05-16 06:03:41] 2024-05-16 04:03:25,275 | INFO     | sum of square deviations: 4075741535.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,277 | INFO     | sum of deviations: -315643463.0000001
[2024-05-16 06:03:41] 2024-05-16 04:03:25,277 | INFO     | mean x: 1715824990.5
[2024-05-16 06:03:41] 2024-05-16 04:03:25,277 | INFO     | mean y: 2349213.025423729
[2024-05-16 06:03:41] 2024-05-16 04:03:25,277 | INFO     | -- intersect: 135230294.23543778
[2024-05-16 06:03:41] 2024-05-16 04:03:25,277 | INFO     | intersect: 135230294.23543778
[2024-05-16 06:03:41] 2024-05-16 04:03:25,278 | INFO     | chi2: 0.013160607628325948
[2024-05-16 06:03:41] 2024-05-16 04:03:25,278 | INFO     | current chi2=0.013160607628325948 (change=9.349284495734082 %)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,278 | INFO     | left removable region: 40
[2024-05-16 06:03:41] 2024-05-16 04:03:25,278 | INFO     | model: linear, x: [1715819043.0, 1715819104.0, 1715819165.0, 1715819226.0, 1715819287.0, 1715819348.0, 1715819409.0, 1715819470.0, 1715819531.0, 1715819592.0, 1715
[2024-05-16 06:03:41] 2024-05-16 04:03:25,278 | INFO     | sum of square deviations: 2871616632.5
[2024-05-16 06:03:41] 2024-05-16 04:03:25,280 | INFO     | sum of deviations: 4837489527.0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,280 | INFO     | mean x: 1715825417.5
[2024-05-16 06:03:41] 2024-05-16 04:03:25,280 | INFO     | mean y: 2345597.657142857
[2024-05-16 06:03:41] 2024-05-16 04:03:25,280 | INFO     | -- intersect: -2888112478.5974536
[2024-05-16 06:03:41] 2024-05-16 04:03:25,280 | INFO     | intersect: -2888112478.5974536
[2024-05-16 06:03:41] 2024-05-16 04:03:25,280 | INFO     | chi2: 0.0003519268207924829
[2024-05-16 06:03:41] 2024-05-16 04:03:25,280 | INFO     | -- intersect: -2888112478.5974536
[2024-05-16 06:03:41] 2024-05-16 04:03:25,281 | INFO     | current memory leak: 1.68 B/s (using 210 data points, chi2=0.00)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,281 | INFO     | ..............................
[2024-05-16 06:03:41] 2024-05-16 04:03:25,281 | INFO     | . Timing measurements:
[2024-05-16 06:03:41] 2024-05-16 04:03:25,281 | INFO     | . get job = 0 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,281 | INFO     | . initial setup = 1 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,281 | INFO     | . payload setup = 5 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,282 | INFO     | . stage-in = 0 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,282 | INFO     | . payload execution = 15593 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,282 | INFO     | . stage-out = 1 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,282 | INFO     | . log creation = 0 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,282 | INFO     | ..............................
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | 
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | job summary report
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | --------------------------------------------------
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | PanDA job id: 6199655161
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | task id: 38744235
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | errors: (none)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | pilot state: finished 
[2024-05-16 06:03:41] 2024-05-16 04:03:25,344 | INFO     | transexitcode: 0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | exeerrorcode: 0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | exeerrordiag: 
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | exitcode: 0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | exitmsg: OK
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | cpuconsumptiontime: 59393 s
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | nevents: 400
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | neventsw: 0
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | pid: 3177086
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | pgrp: 3177086
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | corecount: 4
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | event service: False
[2024-05-16 06:03:41] 2024-05-16 04:03:25,345 | INFO     | sizes: {0: 2391902, 1: 2392101, 4: 2392307, 11: 2392335, 15602: 2423468, 15603: 2432450, 15606: 2432634, 15611: 2432804}
[2024-05-16 06:03:41] 2024-05-16 04:03:25,346 | INFO     | --------------------------------------------------
[2024-05-16 06:03:41] 2024-05-16 04:03:25,346 | INFO     | 
[2024-05-16 06:03:41] 2024-05-16 04:03:25,346 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/1
[2024-05-16 06:03:41] 2024-05-16 04:03:25,369 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,370 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-16 06:03:41] 2024-05-16 04:03:25,371 | INFO     | job 6199655161 has completed (purged errors)
[2024-05-16 06:03:41] 2024-05-16 04:03:25,372 | INFO     | overall cleanup function is called
[2024-05-16 06:03:41] 2024-05-16 04:03:26,379 | INFO     | --- collectZombieJob: --- 10, [3177086]
[2024-05-16 06:03:41] 2024-05-16 04:03:26,379 | INFO     | zombie collector waiting for pid 3177086
[2024-05-16 06:03:41] 2024-05-16 04:03:26,379 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-16 06:03:41] 2024-05-16 04:03:27,384 | INFO     | collected zombie processes
[2024-05-16 06:03:41] 2024-05-16 04:03:27,384 | INFO     | will now attempt to kill all subprocesses of pid=3177086
[2024-05-16 06:03:41] 2024-05-16 04:03:27,529 | INFO     | process IDs to be killed: [3177086] (in reverse order)
[2024-05-16 06:03:41] 2024-05-16 04:03:27,648 | WARNING  | found no corresponding commands to process id(s)
[2024-05-16 06:03:41] 2024-05-16 04:03:27,648 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-16 06:03:41] 2024-05-16 04:03:27,657 | INFO     | did not find any defunct processes belonging to 3177086
[2024-05-16 06:03:41] 2024-05-16 04:03:27,666 | INFO     | did not find any defunct processes belonging to 3177086
[2024-05-16 06:03:41] 2024-05-16 04:03:27,666 | INFO     | ready for new job
[2024-05-16 06:03:41] 2024-05-16 04:03:27,666 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-16 06:03:41] 2024-05-16 04:03:27,668 | INFO     | *************************************
[2024-05-16 06:03:41] 2024-05-16 04:03:27,668 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-16 06:03:41] 2024-05-16 04:03:27,668 | INFO     | *************************************
[2024-05-16 06:03:41] 2024-05-16 04:03:27,668 | INFO     | 
[2024-05-16 06:03:41] 2024-05-16 04:03:27,671 | INFO     | architecture information:
[2024-05-16 06:03:41] 2024-05-16 04:03:27,672 | INFO     | executing command: cat /etc/os-release
[2024-05-16 06:03:41] 2024-05-16 04:03:27,692 | INFO     | cat /etc/os-release:
[2024-05-16 06:03:41] NAME="CentOS Linux"
[2024-05-16 06:03:41] VERSION="7 (Core)"
[2024-05-16 06:03:41] ID="centos"
[2024-05-16 06:03:41] ID_LIKE="rhel fedora"
[2024-05-16 06:03:41] VERSION_ID="7"
[2024-05-16 06:03:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-16 06:03:41] ANSI_COLOR="0;31"
[2024-05-16 06:03:41] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-16 06:03:41] HOME_URL="https://www.centos.org/"
[2024-05-16 06:03:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-16 06:03:41] 
[2024-05-16 06:03:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-16 06:03:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-16 06:03:41] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-16 06:03:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-16 06:03:41] 
[2024-05-16 06:03:41] 2024-05-16 04:03:27,692 | INFO     | *************************************
[2024-05-16 06:03:41] 2024-05-16 04:03:28,195 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/1
[2024-05-16 06:03:41] 2024-05-16 04:03:28,218 | INFO     | sufficient remaining disk space (589367869440 B)
[2024-05-16 06:03:41] 2024-05-16 04:03:28,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-16 06:03:41] 2024-05-16 04:03:28,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-16 06:03:41] 2024-05-16 04:03:28,219 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-16 06:03:41] 2024-05-16 04:03:28,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-16 06:03:41] 2024-05-16 04:03:28,344 | INFO     | aborting loop
[2024-05-16 06:03:41] 2024-05-16 04:03:28,466 | INFO     | all data control threads have been joined
[2024-05-16 06:03:41] 2024-05-16 04:03:28,637 | INFO     | all payload control threads have been joined
[2024-05-16 06:03:41] 2024-05-16 04:03:28,939 | INFO     | all job control threads have been joined
[2024-05-16 06:03:41] 2024-05-16 04:03:29,076 | INFO     | found 0 job(s) in 20 queues
[2024-05-16 06:03:41] 2024-05-16 04:03:29,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-16 06:03:41] 2024-05-16 04:03:29,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-16 06:03:41] 2024-05-16 04:03:29,224 | INFO     | [job] retrieve thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,349 | INFO     | [job] job monitor thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,377 | INFO     | [payload] validate_pre thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,471 | INFO     | [data] control thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,566 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,642 | INFO     | [payload] control thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,749 | INFO     | [job] validate thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,786 | INFO     | [job] create_data_payload thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,871 | INFO     | [payload] validate_post thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:29,944 | INFO     | [job] control thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:30,200 | INFO     | [data] copytool_in thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:30,224 | INFO     | [data] copytool_out thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:30,344 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-16 06:03:41] 2024-05-16 04:03:30,352 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-16 06:03:41] 2024-05-16 04:03:30,463 | INFO     | [payload] execute_payloads thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:30,508 | INFO     | [payload] failed_post thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:31,358 | INFO     | [job] queue monitor thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:34,346 | INFO     | [data] queue_monitor thread has finished
[2024-05-16 06:03:41] 2024-05-16 04:03:35,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47969322234944)>', '<ExcThread(monitor, started 47969629918976)>']
[2024-05-16 06:03:41] 2024-05-16 04:03:36,111 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-16 06:03:41] 2024-05-16 04:03:36,111 | INFO     | [monitor] control thread has ended
[2024-05-16 06:03:41] 2024-05-16 04:03:40,480 | INFO     | all workflow threads have been joined
[2024-05-16 06:03:41] 2024-05-16 04:03:40,480 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-16 06:03:41] 2024-05-16 04:03:40,480 | INFO     | traces error code: 0
[2024-05-16 06:03:41] 2024-05-16 04:03:40,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-16 06:03:41] 2024-05-16 04:03:40,575 [wrapper] ==== pilot stdout END ====
[2024-05-16 06:03:41] 2024-05-16 04:03:40,578 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-16 06:03:41] 2024-05-16 04:03:40,580 [wrapper] pilotpid: 3170051
[2024-05-16 06:03:41] 2024-05-16 04:03:40,585 [wrapper] Pilot exit status: 0
[2024-05-16 06:03:41] 2024-05-16 04:03:40,596 [wrapper] pandaids: 6199655161
[2024-05-16 06:03:41] 2024-05-16 04:03:40,686 [wrapper] cleanup: SIGTERM to supervisor_pilot 3892635 3170052
[2024-05-16 06:03:41] 2024-05-16 04:03:40,689 [wrapper] Test setup, not cleaning
[2024-05-16 06:03:41] 2024-05-16 04:03:40,692 [wrapper] ==== wrapper stdout END ====
[2024-05-16 06:03:41] 2024-05-16 04:03:40,694 [wrapper] ==== wrapper stderr END ====
[2024-05-16 06:03:41] 2024-05-16 04:03:40,700 [wrapper] apfmon messages muted
[2024-05-16 06:03:41]  *** Error codes and diagnostics ***
[2024-05-16 06:03:41]     "exeErrorCode": 0,
[2024-05-16 06:03:41]     "exeErrorDiag": "",
[2024-05-16 06:03:41]     "pilotErrorCode": 0,
[2024-05-16 06:03:41]     "pilotErrorDiag": "",
[2024-05-16 06:03:41]  *** Listing of results directory ***
[2024-05-16 06:03:41] total 865028
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc    467845 May  9 03:36 pilot3.tar.gz
[2024-05-16 06:03:41] -rwx------ 1 boinc boinc     32251 May  9 03:38 runpilot2-wrapper.sh
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc      5633 May  9 03:38 queuedata.json
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc       100 May 16 01:42 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-16 06:03:41] -rwxr-xr-x 1 boinc boinc      7986 May 16 01:42 run_atlas
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc       105 May 16 01:42 job.xml
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc      6662 May 16 01:42 init_data.xml
[2024-05-16 06:03:41] -rw-r--r-- 2 boinc boinc 622595600 May 16 01:42 EVNT.38744233._000030.pool.root.1
[2024-05-16 06:03:41] -rw-r--r-- 2 boinc boinc     17537 May 16 01:42 start_atlas.sh
[2024-05-16 06:03:41] drwxrwx--x 2 boinc boinc      4096 May 16 01:42 shared
[2024-05-16 06:03:41] -rw-r--r-- 2 boinc boinc    479981 May 16 01:42 input.tar.gz
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc         0 May 16 01:42 boinc_lockfile
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc      2536 May 16 01:42 pandaJob.out
[2024-05-16 06:03:41] -rw------- 1 boinc boinc       424 May 16 01:42 setup.sh.local
[2024-05-16 06:03:41] -rw------- 1 boinc boinc   1011347 May 16 01:42 agis_schedconf.cvmfs.json
[2024-05-16 06:03:41] -rw------- 1 boinc boinc   1324701 May 16 01:42 cric_ddmendpoints.json
[2024-05-16 06:03:41] drwx------ 4 boinc boinc      4096 May 16 01:42 pilot3
[2024-05-16 06:03:41] -rw------- 1 boinc boinc 255588306 May 16 06:02 HITS.38744235._000760.pool.root.1
[2024-05-16 06:03:41] -rw------- 1 boinc boinc        95 May 16 06:02 pilot_heartbeat.json
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc       532 May 16 06:02 boinc_task_state.xml
[2024-05-16 06:03:41] -rw------- 1 boinc boinc      1049 May 16 06:03 memory_monitor_summary.json
[2024-05-16 06:03:41] -rw------- 1 boinc boinc         0 May 16 06:03 agis_ddmendpoints.agis.ALL.json
[2024-05-16 06:03:41] -rw------- 1 boinc boinc    366746 May 16 06:03 log.38744235._000760.job.log.tgz.1
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc        28 May 16 06:03 wrapper_checkpoint.txt
[2024-05-16 06:03:41] -rw------- 1 boinc boinc      7760 May 16 06:03 heartbeat.json
[2024-05-16 06:03:41] -rw------- 1 boinc boinc      4221 May 16 06:03 pilotlog.txt
[2024-05-16 06:03:41] -rw------- 1 boinc boinc   1674345 May 16 06:03 log.38744235._000760.job.log.1
[2024-05-16 06:03:41] -rw------- 1 boinc boinc       357 May 16 06:03 output.list
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc       620 May 16 06:03 runtime_log
[2024-05-16 06:03:41] -rw------- 1 boinc boinc   2058240 May 16 06:03 result.tar.gz
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc     11410 May 16 06:03 runtime_log.err
[2024-05-16 06:03:41] -rw------- 1 boinc boinc       659 May 16 06:03 6tCODmIv7O5nsSi4apGgGQJmABFKDmABFKDm4ySLDmfbIKDmTukOAn.diag
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc      8192 May 16 06:03 boinc_mmap_file
[2024-05-16 06:03:41] -rw-r--r-- 1 boinc boinc     21308 May 16 06:03 stderr.txt
[2024-05-16 06:03:41] HITS file was successfully produced:
[2024-05-16 06:03:41] -rw------- 1 boinc boinc 255588306 May 16 06:02 shared/HITS.pool.root.1
[2024-05-16 06:03:41]  *** Contents of shared directory: ***
[2024-05-16 06:03:41] total 860116
[2024-05-16 06:03:41] -rw-r--r-- 2 boinc boinc 622595600 May 16 01:42 ATLAS.root_0
[2024-05-16 06:03:41] -rw-r--r-- 2 boinc boinc     17537 May 16 01:42 start_atlas.sh
[2024-05-16 06:03:41] -rw-r--r-- 2 boinc boinc    479981 May 16 01:42 input.tar.gz
[2024-05-16 06:03:41] -rw------- 1 boinc boinc 255588306 May 16 06:02 HITS.pool.root.1
[2024-05-16 06:03:41] -rw------- 1 boinc boinc   2058240 May 16 06:03 result.tar.gz
06:03:42 (3165649): run_atlas exited; CPU time 59050.694709
06:03:42 (3165649): called boinc_finish(0)

</stderr_txt>
]]>

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