Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
00:14:56 (184537): wrapper (7.7.26015): starting
00:14:56 (184537): wrapper: running run_atlas (--nthreads 12)
[2024-05-11 00:14:56] Arguments: --nthreads 12
[2024-05-11 00:14:56] Threads: 12
[2024-05-11 00:14:56] Checking for CVMFS
[2024-05-11 00:14:56] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-11 00:14:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-11 00:14:56] Running cvmfs_config stat atlas.cern.ch
[2024-05-11 00:14:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-11 00:14:57] 2.10.1.0 143511 6701 168280 132610 0 480 37112546 45568001 23319 130560 0 43442845 99.842 18686119 24051 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2024-05-11 00:14:57] CVMFS is ok
[2024-05-11 00:14:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-11 00:14:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-11 00:14:57] Further information can be found at the LHC@home message board.
[2024-05-11 00:14:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-11 00:14:57] Checking for apptainer binary...
[2024-05-11 00:14:57] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-11 00:14:57] Running /usr/bin/apptainer --version
[2024-05-11 00:14:57] apptainer version 1.1.8-1.el7
[2024-05-11 00:14:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-11 00:14:58] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0140.triumf.lcg
[2024-05-11 00:14:58] apptainer works
[2024-05-11 00:14:58] Set ATHENA_PROC_NUMBER=12
[2024-05-11 00:14:58] Set ATHENA_CORE_NUMBER=12
[2024-05-11 00:14:58] Starting ATLAS job with PandaID=6199645147
[2024-05-11 00:14:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-15 10:12:23]  *** The last 200 lines of the pilot log: ***
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | mean y: 4218984.19547603
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | -- intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | chi2: 31.341978438573378
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | -- intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | current memory leak: 1.70 B/s (using 5924 data points, chi2=31.34)
[2024-05-15 10:12:23] 2024-05-15 17:12:02,973 | INFO     | ..............................
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . Timing measurements:
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . get job = 0 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . initial setup = 5 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . payload setup = 32 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . stage-in = 0 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . payload execution = 381231 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . stage-out = 4 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . log creation = 11 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | ..............................
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6199645147/pilotlog.txt
[2024-05-15 10:12:23] 2024-05-15 17:12:03,010 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2024-05-15 10:12:23] - Log from pilotlog.txt -
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | sum of deviations: 124080056874185.28
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | mean x: 1715600999.9885213
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | mean y: 4218984.19547603
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | -- intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | chi2: 31.341978438573378
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | -- intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | current memory leak: 1.70 B/s (using 5924 data points, chi2=31.34)
[2024-05-15 10:12:23] 2024-05-15 17:12:02,973 | INFO     | ..............................
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . Timing measurements:
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . get job = 0 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . initial setup = 5 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . payload setup = 32 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . stage-in = 0 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . payload execution = 381231 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . stage-out = 4 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . log creation = 11 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | ..............................
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6199645147/pilotlog.txt
[2024-05-15 10:12:23] 2024-05-15 17:12:03,010 | WARNING  | 
[2024-05-15 10:12:23] [begin log extracts]
[2024-05-15 10:12:23] - Log from pilotlog.txt -
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | sum of deviations: 124080056874185.28
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | mean x: 1715600999.9885213
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | mean y: 4218984.19547603
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | -- intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,966 | INFO     | intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | chi2: 31.341978438573378
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | -- intersect: -2912134963.022263
[2024-05-15 10:12:23] 2024-05-15 17:12:02,970 | INFO     | current memory leak: 1.70 B/s (using 5924 data points, chi2=31.34)
[2024-05-15 10:12:23] 2024-05-15 17:12:02,973 | INFO     | ..............................
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . Timing measurements:
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . get job = 0 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . initial setup = 5 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . payload setup = 32 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . stage-in = 0 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . payload execution = 381231 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . stage-out = 4 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | . log creation = 11 s
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | ..............................
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-05-15 10:12:23] 2024-05-15 17:12:02,974 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6199645147/pilotlog.txt
[2024-05-15 10:12:23] [end log extracts]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,010 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2024-05-15 10:12:23] 2024-05-15 17:12:03,010 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute 2024-05-15 10:11:06,114 CRITICAL Transform executor raised TransformValidationExcep
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | 
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | job summary report
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | --------------------------------------------------
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | PanDA job id: 6199645147
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | task id: 38734053
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2024-05-15 10:11:06,114 CRITICAL Transform executor raised TransformValidationExceptio
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | error 2/2: 1165: Local output file is missing
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | pilot state: failed 
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | transexitcode: 65
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | exeerrorcode: 65
[2024-05-15 10:12:23] 2024-05-15 17:12:03,067 | INFO     | exeerrordiag: Non-zero return code from HITSMergeAthenaMP0 (64); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown; Evt:
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | exitcode: 65
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | exitmsg: Non-zero return code from HITSMergeAthenaMP0 (64); Logfile error in log.HITSMergeAthenaMP0: "Segmentation fault: Event counter: 0; Run: unknown; Evt: unkn
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | cpuconsumptiontime: 220057 s
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | nevents: 0
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | neventsw: 0
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | pid: 216846
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | pgrp: 216846
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | corecount: 12
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | event service: False
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | sizes: {0: 2384618, 1: 2385216, 2: 2386036, 4: 2386179, 5: 2386207, 8: 2386263, 19: 2386419, 27: 2386653, 29: 2386681, 381265: 2549043, 381267: 2549046, 381281: 25
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | --------------------------------------------------
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | 
[2024-05-15 10:12:23] 2024-05-15 17:12:03,068 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2024-05-15 10:12:23] 2024-05-15 17:12:03,091 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,091 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,091 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,091 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,092 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,092 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,092 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,092 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,092 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue failed_jobs had 1 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | job 6199645147 has completed (purged errors)
[2024-05-15 10:12:23] 2024-05-15 17:12:03,097 | INFO     | overall cleanup function is called
[2024-05-15 10:12:23] 2024-05-15 17:12:04,134 | INFO     | --- collectZombieJob: --- 10, [216846]
[2024-05-15 10:12:23] 2024-05-15 17:12:04,134 | INFO     | zombie collector waiting for pid 216846
[2024-05-15 10:12:23] 2024-05-15 17:12:04,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-15 10:12:23] 2024-05-15 17:12:05,136 | INFO     | collected zombie processes
[2024-05-15 10:12:23] 2024-05-15 17:12:05,136 | INFO     | will now attempt to kill all subprocesses of pid=216846
[2024-05-15 10:12:23] 2024-05-15 17:12:05,925 | INFO     | process IDs to be killed: [216846] (in reverse order)
[2024-05-15 10:12:23] 2024-05-15 17:12:06,252 | WARNING  | found no corresponding commands to process id(s)
[2024-05-15 10:12:23] 2024-05-15 17:12:06,253 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-15 10:12:23] 2024-05-15 17:12:06,299 | INFO     | did not find any defunct processes belonging to 216846
[2024-05-15 10:12:23] 2024-05-15 17:12:06,315 | INFO     | did not find any defunct processes belonging to 216846
[2024-05-15 10:12:23] 2024-05-15 17:12:06,315 | INFO     | ready for new job
[2024-05-15 10:12:23] 2024-05-15 17:12:06,315 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-15 10:12:23] 2024-05-15 17:12:06,347 | INFO     | *************************************
[2024-05-15 10:12:23] 2024-05-15 17:12:06,348 | INFO     | ***  PanDA Pilot version 3.7.5.4  ***
[2024-05-15 10:12:23] 2024-05-15 17:12:06,348 | INFO     | *************************************
[2024-05-15 10:12:23] 2024-05-15 17:12:06,348 | INFO     | 
[2024-05-15 10:12:23] 2024-05-15 17:12:06,350 | INFO     | architecture information:
[2024-05-15 10:12:23] 2024-05-15 17:12:06,351 | INFO     | executing command: cat /etc/os-release
[2024-05-15 10:12:23] 2024-05-15 17:12:07,040 | INFO     | cat /etc/os-release:
[2024-05-15 10:12:23] NAME="CentOS Linux"
[2024-05-15 10:12:23] VERSION="7 (Core)"
[2024-05-15 10:12:23] ID="centos"
[2024-05-15 10:12:23] ID_LIKE="rhel fedora"
[2024-05-15 10:12:23] VERSION_ID="7"
[2024-05-15 10:12:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-15 10:12:23] ANSI_COLOR="0;31"
[2024-05-15 10:12:23] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-15 10:12:23] HOME_URL="https://www.centos.org/"
[2024-05-15 10:12:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-15 10:12:23] 
[2024-05-15 10:12:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-15 10:12:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-15 10:12:23] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-15 10:12:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-15 10:12:23] 
[2024-05-15 10:12:23] 2024-05-15 17:12:07,041 | INFO     | *************************************
[2024-05-15 10:12:23] 2024-05-15 17:12:07,544 | INFO     | executing command: df -mP /home/boinc/slots/0
[2024-05-15 10:12:23] 2024-05-15 17:12:08,303 | INFO     | sufficient remaining disk space (2146899591168 B)
[2024-05-15 10:12:23] 2024-05-15 17:12:08,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-15 10:12:23] 2024-05-15 17:12:08,303 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-15 10:12:23] 2024-05-15 17:12:08,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-15 10:12:23] 2024-05-15 17:12:08,304 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-15 10:12:23] 2024-05-15 17:12:08,304 | INFO     | found 0 job(s) in 20 queues
[2024-05-15 10:12:23] 2024-05-15 17:12:08,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-15 10:12:23] 2024-05-15 17:12:08,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-15 10:12:23] 2024-05-15 17:12:08,362 | INFO     | all data control threads have been joined
[2024-05-15 10:12:23] 2024-05-15 17:12:08,471 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-15 10:12:23] 2024-05-15 17:12:08,471 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-15 10:12:23] 2024-05-15 17:12:08,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-15 10:12:23] 2024-05-15 17:12:08,471 | INFO     | will abort loop
[2024-05-15 10:12:23] 2024-05-15 17:12:08,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-15 10:12:23] 2024-05-15 17:12:09,004 | INFO     | all job control threads have been joined
[2024-05-15 10:12:23] 2024-05-15 17:12:09,309 | INFO     | [job] retrieve thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:09,313 | INFO     | [job] queue monitor thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:09,317 | INFO     | [job] create_data_payload thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:09,374 | INFO     | [data] control thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:09,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-15 10:12:23] 2024-05-15 17:12:09,476 | INFO     | [job] job monitor thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:09,481 | INFO     | all payload control threads have been joined
[2024-05-15 10:12:23] 2024-05-15 17:12:09,500 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,012 | INFO     | [job] control thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,306 | INFO     | [payload] validate_pre thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,359 | INFO     | [payload] execute_payloads thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,362 | INFO     | [job] validate thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,387 | INFO     | [payload] validate_post thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,489 | INFO     | [payload] control thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,517 | INFO     | [payload] failed_post thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:10,538 | INFO     | [data] copytool_in thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:11,417 | INFO     | [data] copytool_out thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:12,779 | INFO     | [data] queue_monitor thread has finished
[2024-05-15 10:12:23] 2024-05-15 17:12:13,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139685918349120)>', '<ExcThread(monitor, started 139685355583232)>']
[2024-05-15 10:12:23] 2024-05-15 17:12:14,351 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-15 10:12:23] 2024-05-15 17:12:14,351 | INFO     | [monitor] control thread has ended
[2024-05-15 10:12:23] 2024-05-15 17:12:18,471 | INFO     | all workflow threads have been joined
[2024-05-15 10:12:23] 2024-05-15 17:12:18,471 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-15 10:12:23] 2024-05-15 17:12:18,532 | INFO     | traces error code: 0
[2024-05-15 10:12:23] 2024-05-15 17:12:18,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-15 10:12:23] 2024-05-15 17:12:19,783 [wrapper] ==== pilot stdout END ====
[2024-05-15 10:12:23] 2024-05-15 17:12:19,785 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-15 10:12:23] 2024-05-15 17:12:19,865 [wrapper] pilotpid: 202282
[2024-05-15 10:12:23] 2024-05-15 17:12:19,868 [wrapper] Pilot exit status: 0
[2024-05-15 10:12:23] 2024-05-15 17:12:20,120 [wrapper] pandaids: 6199645147
[2024-05-15 10:12:23] 2024-05-15 17:12:20,320 [wrapper] cleanup: SIGTERM to supervisor_pilot  18513 202283
[2024-05-15 10:12:23] 2024-05-15 17:12:20,323 [wrapper] Test setup, not cleaning
[2024-05-15 10:12:23] 2024-05-15 17:12:20,325 [wrapper] ==== wrapper stdout END ====
[2024-05-15 10:12:23] 2024-05-15 17:12:20,363 [wrapper] ==== wrapper stderr END ====
[2024-05-15 10:12:23] 2024-05-15 17:12:20,459 [wrapper] apfmon messages muted
[2024-05-15 10:12:23]  *** Error codes and diagnostics ***
[2024-05-15 10:12:23]     "exeErrorCode": 65,
[2024-05-15 10:12:23]     "exeErrorDiag": "Non-zero return code from HITSMergeAthenaMP0 (64); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: <NONE>; Current Function: unknown\"",
[2024-05-15 10:12:23]     "pilotErrorCode": 1305,
[2024-05-15 10:12:23]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-05-15 10:11:06,114 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from HITSMergeAthenaMP0 (64); Logfile error in log.HITSMergeAthenaMP0: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; ",
[2024-05-15 10:12:23]  *** Listing of results directory ***
[2024-05-15 10:12:23] total 501268
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc    467845 May  8 18:16 pilot3.tar.gz
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc      5633 May  8 18:23 queuedata.json
[2024-05-15 10:12:23] -rwx------ 1 boinc boinc     32251 May  8 18:24 runpilot2-wrapper.sh
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc       100 May 11 00:14 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-15 10:12:23] -rwxr-xr-x 1 boinc boinc      7986 May 11 00:14 run_atlas
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc       105 May 11 00:14 job.xml
[2024-05-15 10:12:23] -rw-r--r-- 2 boinc boinc 330357537 May 11 00:14 EVNT.38734051._000672.pool.root.1
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc      6626 May 11 00:14 init_data.xml
[2024-05-15 10:12:23] -rw-r--r-- 2 boinc boinc     17537 May 11 00:14 start_atlas.sh
[2024-05-15 10:12:23] drwxrwx--x 2 boinc boinc      4096 May 11 00:14 shared
[2024-05-15 10:12:23] -rw-r--r-- 2 boinc boinc    480171 May 11 00:14 input.tar.gz
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc         0 May 11 00:14 boinc_lockfile
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc      2850 May 11 00:14 pandaJob.out
[2024-05-15 10:12:23] -rw------- 1 boinc boinc       424 May 11 00:14 setup.sh.local
[2024-05-15 10:12:23] -rw------- 1 boinc boinc   1002347 May 11 00:15 agis_schedconf.cvmfs.json
[2024-05-15 10:12:23] -rw------- 1 boinc boinc   1319809 May 11 00:16 cric_ddmendpoints.json
[2024-05-15 10:12:23] drwx------ 4 boinc boinc      4096 May 11 00:16 pilot3
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc       534 May 15 09:43 boinc_task_state.xml
[2024-05-15 10:12:23] -rw------- 1 boinc boinc      1083 May 15 10:11 memory_monitor_summary.json
[2024-05-15 10:12:23] -rw------- 1 boinc boinc  18615954 May 15 10:11 log.38734053._002929.job.log.tgz.1
[2024-05-15 10:12:23] -rw------- 1 boinc boinc         0 May 15 10:11 agis_ddmendpoints.agis.ALL.json
[2024-05-15 10:12:23] -rw------- 1 boinc boinc        95 May 15 10:11 pilot_heartbeat.json
[2024-05-15 10:12:23] -rw------- 1 boinc boinc     30504 May 15 10:12 heartbeat.json
[2024-05-15 10:12:23] -rw------- 1 boinc boinc      4519 May 15 10:12 pilotlog.txt
[2024-05-15 10:12:23] -rw------- 1 boinc boinc  71079342 May 15 10:12 log.38734053._002929.job.log.1
[2024-05-15 10:12:23] -rw------- 1 boinc boinc       186 May 15 10:12 output.list
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc       620 May 15 10:12 runtime_log
[2024-05-15 10:12:23] -rw------- 1 boinc boinc  89733120 May 15 10:12 result.tar.gz
[2024-05-15 10:12:23] -rw------- 1 boinc boinc       668 May 15 10:12 S5dMDmJh7O5n7Olcko1bjSoqABFKDmABFKDmOtvXDml7VKDmDzFENo.diag
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc     11136 May 15 10:12 runtime_log.err
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc        30 May 15 10:12 wrapper_checkpoint.txt
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc      8192 May 15 10:12 boinc_mmap_file
[2024-05-15 10:12:23] -rw-r--r-- 1 boinc boinc     22216 May 15 10:12 stderr.txt
[2024-05-15 10:12:23] No HITS result produced
[2024-05-15 10:12:23]  *** Contents of shared directory: ***
[2024-05-15 10:12:23] total 410744
[2024-05-15 10:12:23] -rw-r--r-- 2 boinc boinc 330357537 May 11 00:14 ATLAS.root_0
[2024-05-15 10:12:23] -rw-r--r-- 2 boinc boinc     17537 May 11 00:14 start_atlas.sh
[2024-05-15 10:12:23] -rw-r--r-- 2 boinc boinc    480171 May 11 00:14 input.tar.gz
[2024-05-15 10:12:23] -rw------- 1 boinc boinc  89733120 May 15 10:12 result.tar.gz
10:12:25 (184537): run_atlas exited; CPU time 214801.228621
10:12:25 (184537): called boinc_finish(0)

</stderr_txt>
]]>

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