Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-14 05:46:25 (19596): Detected: vboxwrapper 26206
2024-05-14 05:46:25 (19596): Detected: BOINC client v7.16.11
2024-05-14 05:46:26 (19596): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2024-05-14 05:46:26 (19596): Successfully copied 'init_data.xml' to the shared directory.
2024-05-14 05:46:27 (19596): Create VM. (boinc_c274ec8d46876d2a, slot#6)
2024-05-14 05:46:27 (19596): Setting Memory Size for VM. (4800MB)
2024-05-14 05:46:27 (19596): Setting CPU Count for VM. (8)
2024-05-14 05:46:28 (19596): Setting Chipset Options for VM.
2024-05-14 05:46:28 (19596): Setting Graphics Controller Options for VM.
2024-05-14 05:46:28 (19596): Setting Boot Options for VM.
2024-05-14 05:46:28 (19596): Setting Network Configuration for NAT.
2024-05-14 05:46:29 (19596): Enabling VM Network Access.
2024-05-14 05:46:29 (19596): Disabling USB Support for VM.
2024-05-14 05:46:29 (19596): Disabling COM Port Support for VM.
2024-05-14 05:46:30 (19596): Disabling LPT Port Support for VM.
2024-05-14 05:46:30 (19596): Disabling Audio Support for VM.
2024-05-14 05:46:30 (19596): Disabling Clipboard Support for VM.
2024-05-14 05:46:30 (19596): Disabling Drag and Drop Support for VM.
2024-05-14 05:46:31 (19596): Adding storage controller(s) to VM.
2024-05-14 05:46:31 (19596): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-14 05:46:31 (19596): Adding VirtualBox Guest Additions to VM.
2024-05-14 05:46:32 (19596): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-14 05:46:32 (19596): forwarding host port 51053 to guest port 80
2024-05-14 05:46:32 (19596): Enabling remote desktop for VM.
2024-05-14 05:46:32 (19596): Required extension pack not installed, remote desktop not enabled.
2024-05-14 05:46:32 (19596): Enabling shared directory for VM.
2024-05-14 05:46:33 (19596): Starting VM using VBoxManage interface. (boinc_c274ec8d46876d2a, slot#6)
2024-05-14 05:46:40 (19596): Successfully started VM. (PID = '20336')
2024-05-14 05:46:40 (19596): Reporting VM Process ID to BOINC.
2024-05-14 05:46:40 (19596): Guest Log: BIOS: VirtualBox 6.1.12
2024-05-14 05:46:40 (19596): Guest Log: CPUID EDX: 0x178bfbff
2024-05-14 05:46:40 (19596): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-14 05:46:40 (19596): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-14 05:46:40 (19596): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-14 05:46:40 (19596): Detected: Web Application Enabled (http://localhost:51053)
2024-05-14 05:46:40 (19596): Preference change detected
2024-05-14 05:46:40 (19596): Setting CPU throttle for VM. (90%)
2024-05-14 05:46:40 (19596): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-14 05:46:42 (19596): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-14 05:46:42 (19596): Guest Log: BIOS: Booting from Hard Disk...
2024-05-14 05:46:45 (19596): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-14 05:46:45 (19596): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-14 05:46:45 (19596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-14 05:46:53 (19596): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-14 05:46:53 (19596): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-14 05:47:01 (19596): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.000157 main     Log opened 2024-05-14T05:46:59.972118000Z
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.000264 main     OS Product: Linux
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.000311 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.000347 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.000383 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.000384 main     Process ID: 1369
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.000384 main     Package type: LINUX_64BITS_GENERIC
2024-05-14 05:47:01 (19596): Guest Log: 00:00:00.001459 main     5.2.32 r132073 started. Verbose level = 0
2024-05-14 05:47:01 (19596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-14 05:47:01 (19596): Guest Log: [INFO] Mounting shared directory
2024-05-14 05:47:02 (19596): Guest Log: [INFO] Checking for init_data.xml
2024-05-14 05:47:06 (19596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-14 05:47:06 (19596): Guest Log: [INFO] Detected branch: prod
2024-05-14 05:47:06 (19596): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-14 05:47:06 (19596): Guest Log: Copying input files
2024-05-14 05:47:11 (19596): Guest Log: 00:00:10.004053 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 210 915 691 000ns (GuestNow=1 715 690 830 891 321 000 ns GuestLast=1 715 665 619 975 630 000 ns fSetTimeLastLoop=true )
2024-05-14 05:47:14 (19596): Guest Log: Copied input files into RunAtlas.
2024-05-14 05:47:14 (19596): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-05-14 05:47:14 (19596): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-05-14 05:47:14 (19596): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-05-14 05:47:14 (19596): Guest Log: Further information can be found at the LHC@home message board.
2024-05-14 05:47:23 (19596): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-14 05:47:23 (19596): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-14 05:47:23 (19596): Guest Log: 2.6.3.0 1665 0 32188 132719 3 1 3116989 4096000 0 65024 1 0 n/a 1 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2024-05-14 05:47:24 (19596): Guest Log: copied the webapp to /var/www
2024-05-14 05:47:24 (19596): Guest Log: ATHENA_PROC_NUMBER=8
2024-05-14 05:47:24 (19596): Guest Log: ATHENA_CORE_NUMBER=8
2024-05-14 05:47:24 (19596): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-14 05:47:24 (19596): Guest Log:  *** Starting ATLAS job. (PandaID=6199231095 taskID=38744253) ***
2024-05-14 05:56:56 (19596): Preference change detected
2024-05-14 05:56:56 (19596): Setting CPU throttle for VM. (90%)
2024-05-14 05:56:56 (19596): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-14 07:26:48 (19596): Status Report: Elapsed Time: '6000.000000'
2024-05-14 07:26:48 (19596): Status Report: CPU Time: '10322.078125'
2024-05-14 09:06:58 (19596): Status Report: Elapsed Time: '12000.000000'
2024-05-14 09:06:58 (19596): Status Report: CPU Time: '22884.187500'
2024-05-14 09:20:04 (19596): Guest Log:  *** Job finished ***
2024-05-14 09:20:04 (19596): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:19:54,599 | INFO     | [data] copytool_out thread has finished
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:19:54,624 | INFO     | [job] queue monitor thread has finished
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:19:57,207 | INFO     | [data] queue_monitor thread has finished
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:19:58,118 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140166424999744)>', '<ExcThread(monitor, started 140165771155200)>']
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:19:58,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:19:58,537 | INFO     | [monitor] control thread has ended
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,129 | INFO     | all workflow threads have been joined
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,129 | INFO     | end of generic workflow (traces error code: 0)
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,129 | INFO     | traces error code: 0
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,198 [wrapper] ==== pilot stdout END ====
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,207 [wrapper] ==== wrapper stdout RESUME ====
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,214 [wrapper] pilotpid: 6583
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,223 [wrapper] Pilot exit status: 0
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,326 [wrapper] pandaids: 6199231095
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,388 [wrapper] cleanup: SIGTERM to supervisor_pilot 15962 6584
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,896 [wrapper] Test setup, not cleaning
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,905 [wrapper] ==== wrapper stdout END ====
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,913 [wrapper] ==== wrapper stderr END ====
2024-05-14 09:20:04 (19596): Guest Log: 2024-05-14 16:20:03,929 [wrapper] apfmon messages muted
2024-05-14 09:20:04 (19596): Guest Log:  *** Error codes and diagnostics ***
2024-05-14 09:20:04 (19596): Guest Log:     "exeErrorCode": 0,
2024-05-14 09:20:04 (19596): Guest Log:     "exeErrorDiag": "",
2024-05-14 09:20:04 (19596): Guest Log:     "pilotErrorCode": 0,
2024-05-14 09:20:04 (19596): Guest Log:     "pilotErrorDiag": "",
2024-05-14 09:20:04 (19596): Guest Log:  *** Listing of results directory ***
2024-05-14 09:20:04 (19596): Guest Log: total 221864
2024-05-14 09:20:04 (19596): Guest Log: -rw-r--r--. 1 atlas atlas    467845 May  8 14:49 pilot3.tar.gz
2024-05-14 09:20:04 (19596): Guest Log: -rw-r--r--. 1 atlas atlas      5633 May  8 15:36 queuedata.json
2024-05-14 09:20:04 (19596): Guest Log: -rwx------. 1 atlas atlas     32251 May  8 15:36 runpilot2-wrapper.sh
2024-05-14 09:20:04 (19596): Guest Log: -rwxr-xr-x. 1 atlas atlas     12096 May 14 12:47 init_data.xml
2024-05-14 09:20:04 (19596): Guest Log: -rwxr-xr-x. 1 atlas atlas    479967 May 14 12:47 input.tar.gz
2024-05-14 09:20:04 (19596): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May 14 12:47 start_atlas.sh
2024-05-14 09:20:04 (19596): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 14 12:47 EVNT.38744251._000009.pool.root.1 -> /data/./ATLAS.root_0
2024-05-14 09:20:04 (19596): Guest Log: -rw-r--r--. 1 atlas atlas      2513 May 14 12:47 pandaJob.out
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas       424 May 14 12:47 setup.sh.local
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas   1003933 May 14 12:48 agis_schedconf.cvmfs.json
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas   1319809 May 14 12:48 cric_ddmendpoints.json
2024-05-14 09:20:04 (19596): Guest Log: drwx------. 4 atlas atlas      4096 May 14 12:48 pilot3
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas 220971494 May 14 16:18 HITS.38744253._000247.pool.root.1
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas        95 May 14 16:19 pilot_heartbeat.json
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas      1034 May 14 16:19 memory_monitor_summary.json
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas         0 May 14 16:19 agis_ddmendpoints.agis.ALL.json
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas    360762 May 14 16:19 log.38744253._000247.job.log.tgz.1
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas      7738 May 14 16:19 heartbeat.json
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas      4394 May 14 16:20 pilotlog.txt
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas   1021106 May 14 16:20 log.38744253._000247.job.log.1
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas       357 May 14 16:20 output.list
2024-05-14 09:20:04 (19596): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 14 16:20 runtime_log
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas   1402880 May 14 16:20 result.tar.gz
2024-05-14 09:20:04 (19596): Guest Log: -rw-r--r--. 1 atlas atlas     10937 May 14 16:20 runtime_log.err
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas       650 May 14 16:20 g5iKDmtWyO5nsSi4apGgGQJmABFKDmABFKDm4ySLDmpNIKDmHp1Ivm.diag
2024-05-14 09:20:04 (19596): Guest Log: Looking for outputfile HITS.38744253._000247.pool.root.1
2024-05-14 09:20:04 (19596): Guest Log: HITS file was successfully produced
2024-05-14 09:20:04 (19596): Guest Log: -rw-------. 1 atlas atlas 220971494 May 14 16:18 /home/atlas/RunAtlas/HITS.38744253._000247.pool.root.1
2024-05-14 09:20:11 (19596): Guest Log: Successfully finished the ATLAS job!
2024-05-14 09:20:11 (19596): Guest Log: Copying the results back to the shared directory!
2024-05-14 09:20:11 (19596): Guest Log:  *** Contents of shared directory: ***
2024-05-14 09:20:11 (19596): Guest Log: total 797044
2024-05-14 09:20:11 (19596): Guest Log: -rwxrwxrwx. 1 root root 593276857 May 14 12:46 ATLAS.root_0
2024-05-14 09:20:11 (19596): Guest Log: -rwxrwxrwx. 1 root root 220971494 May 14 16:20 HITS.pool.root.1
2024-05-14 09:20:11 (19596): Guest Log: -rwxrwxrwx. 1 root root     12096 May 14 12:46 init_data.xml
2024-05-14 09:20:11 (19596): Guest Log: -rwxrwxrwx. 1 root root    479967 May  8 15:38 input.tar.gz
2024-05-14 09:20:11 (19596): Guest Log: -rwxrwxrwx. 1 root root   1402880 May 14 16:20 result.tar.gz
2024-05-14 09:20:11 (19596): Guest Log: -rwxrwxrwx. 1 root root     17537 May  8 15:38 start_atlas.sh
2024-05-14 09:20:11 (19596): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-14 09:20:11 (19596): VM Completion File Detected.
2024-05-14 09:20:11 (19596): Powering off VM.
2024-05-14 09:20:12 (19596): Successfully stopped VM.
2024-05-14 09:20:12 (19596): Deregistering VM. (boinc_c274ec8d46876d2a, slot#6)
2024-05-14 09:20:12 (19596): Removing network bandwidth throttle group from VM.
2024-05-14 09:20:13 (19596): Removing VM from VirtualBox.
09:20:18 (19596): called boinc_finish(0)

</stderr_txt>
]]>

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