Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:42:35 (2276905): wrapper (7.7.26015): starting
23:42:35 (2276905): wrapper: running run_atlas (--nthreads 4)
[2024-05-13 23:42:35] Arguments: --nthreads 4
[2024-05-13 23:42:35] Threads: 4
[2024-05-13 23:42:35] Checking for CVMFS
[2024-05-13 23:42:35] No cvmfs_config command found, will try listing directly
[2024-05-13 23:42:35] CVMFS is ok
[2024-05-13 23:42:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-13 23:42:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-13 23:42:35] Further information can be found at the LHC@home message board.
[2024-05-13 23:42:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-13 23:42:35] Checking for apptainer binary...
[2024-05-13 23:42:35] which: no apptainer in ((null))
[2024-05-13 23:42:35] apptainer is not installed, using version from CVMFS
[2024-05-13 23:42:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-13 23:42:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot120/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2024-05-13 23:42:36] apptainer works
[2024-05-13 23:42:36] Set ATHENA_PROC_NUMBER=4
[2024-05-13 23:42:36] Set ATHENA_CORE_NUMBER=4
[2024-05-13 23:42:36] Starting ATLAS job with PandaID=6198694037
[2024-05-13 23:42:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot120/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-14 17:31:26]  *** The last 200 lines of the pilot log: ***
[2024-05-14 17:31:26] 2024-05-14 15:31:03,199 | INFO     | preparing for final server update for job 6198694037 in state='finished'
[2024-05-14 17:31:26] 2024-05-14 15:31:03,199 | INFO     | this job has now completed (state=finished)
[2024-05-14 17:31:26] 2024-05-14 15:31:03,200 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-05-14 17:31:26] 2024-05-14 15:31:03,200 | INFO     | job 6198694037 has finished - writing final server update
[2024-05-14 17:31:26] 2024-05-14 15:31:03,200 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_25373/.job.ad'
[2024-05-14 17:31:26] 2024-05-14 15:31:03,200 | INFO     | total number of processed events: 2050 (read)
[2024-05-14 17:31:26] 2024-05-14 15:31:03,206 | INFO     | executing command: lscpu
[2024-05-14 17:31:26] 2024-05-14 15:31:03,258 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-05-14 17:31:26] 2024-05-14 15:31:03,258 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-05-14 17:31:26] 2024-05-14 15:31:03,307 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-05-14 17:31:26] 2024-05-14 15:31:04,958 | INFO     | monitor loop #4790: job 0:6198694037 is in state 'finished'
[2024-05-14 17:31:26] 2024-05-14 15:31:04,959 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-14 17:31:26] 2024-05-14 15:31:07,462 | INFO     | monitor loop #4791: job 0:6198694037 is in state 'finished'
[2024-05-14 17:31:26] 2024-05-14 15:31:07,462 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-14 17:31:26] 2024-05-14 15:31:09,967 | INFO     | monitor loop #4792: job 0:6198694037 is in state 'finished'
[2024-05-14 17:31:26] 2024-05-14 15:31:09,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,157 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-14 17:31:26] 2024-05-14 15:31:10,158 | INFO     | using path: /scratch/boinc/var/slot120/slots/1/PanDA_Pilot-6198694037/memory_monitor_summary.json (trf name=prmon)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,158 | INFO     | extracted standard info from prmon json
[2024-05-14 17:31:26] 2024-05-14 15:31:10,159 | INFO     | extracted standard memory fields from prmon json
[2024-05-14 17:31:26] 2024-05-14 15:31:10,159 | WARNING  | GPU info not found in prmon json
[2024-05-14 17:31:26] 2024-05-14 15:31:10,174 | INFO     | fitting pss+swap vs Time
[2024-05-14 17:31:26] 2024-05-14 15:31:10,175 | INFO     | model: linear, x: [1715636607.0, 1715636668.0, 1715636729.0, 1715636790.0, 1715636851.0, 1715636912.0, 1715636973.0, 1715637034.0, 1715637095.0, 1715637156.0, 1715
[2024-05-14 17:31:26] 2024-05-14 15:31:10,175 | INFO     | sum of square deviations: 358959893162.5
[2024-05-14 17:31:26] 2024-05-14 15:31:10,196 | INFO     | sum of deviations: 1910274225998.0002
[2024-05-14 17:31:26] 2024-05-14 15:31:10,196 | INFO     | mean x: 1715668601.5
[2024-05-14 17:31:26] 2024-05-14 15:31:10,197 | INFO     | mean y: 2634061.053333333
[2024-05-14 17:31:26] 2024-05-14 15:31:10,197 | INFO     | -- intersect: -9127626929.73601
[2024-05-14 17:31:26] 2024-05-14 15:31:10,197 | INFO     | intersect: -9127626929.73601
[2024-05-14 17:31:26] 2024-05-14 15:31:10,198 | INFO     | chi2: 13.77661409500589
[2024-05-14 17:31:26] 2024-05-14 15:31:10,199 | INFO     | model: linear, x: [1715636607.0, 1715636668.0, 1715636729.0, 1715636790.0, 1715636851.0, 1715636912.0, 1715636973.0, 1715637034.0, 1715637095.0, 1715637156.0, 1715
[2024-05-14 17:31:26] 2024-05-14 15:31:10,199 | INFO     | sum of square deviations: 353856271890.0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,219 | INFO     | sum of deviations: 2222755578013.0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,219 | INFO     | mean x: 1715668449.0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,219 | INFO     | mean y: 2643398.8105263156
[2024-05-14 17:31:26] 2024-05-14 15:31:10,219 | INFO     | -- intersect: -10774363872.156069
[2024-05-14 17:31:26] 2024-05-14 15:31:10,220 | INFO     | intersect: -10774363872.156069
[2024-05-14 17:31:26] 2024-05-14 15:31:10,220 | INFO     | chi2: 10.935612859022388
[2024-05-14 17:31:26] 2024-05-14 15:31:10,221 | INFO     | current chi2=10.935612859022388 (change=20.62191200531183 %)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,221 | INFO     | right removable region: 1044
[2024-05-14 17:31:26] 2024-05-14 15:31:10,221 | INFO     | model: linear, x: [1715636912.0, 1715636973.0, 1715637034.0, 1715637095.0, 1715637156.0, 1715637217.0, 1715637278.0, 1715637339.0, 1715637400.0, 1715637461.0, 1715
[2024-05-14 17:31:26] 2024-05-14 15:31:10,222 | INFO     | sum of square deviations: 353856271890.0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,235 | INFO     | sum of deviations: 1585719434952.9998
[2024-05-14 17:31:26] 2024-05-14 15:31:10,235 | INFO     | mean x: 1715668754.0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,235 | INFO     | mean y: 2643755.0153110046
[2024-05-14 17:31:26] 2024-05-14 15:31:10,235 | INFO     | -- intersect: -7685701777.560454
[2024-05-14 17:31:26] 2024-05-14 15:31:10,235 | INFO     | intersect: -7685701777.560454
[2024-05-14 17:31:26] 2024-05-14 15:31:10,235 | INFO     | chi2: 10.683233905921787
[2024-05-14 17:31:26] 2024-05-14 15:31:10,236 | INFO     | current chi2=10.683233905921787 (change=22.453849456416673 %)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,236 | INFO     | left removable region: 10
[2024-05-14 17:31:26] 2024-05-14 15:31:10,236 | INFO     | model: linear, x: [1715637217.0, 1715637278.0, 1715637339.0, 1715637400.0, 1715637461.0, 1715637522.0, 1715637583.0, 1715637644.0, 1715637705.0, 1715637766.0, 1715
[2024-05-14 17:31:26] 2024-05-14 15:31:10,236 | INFO     | sum of square deviations: 342799069222.5
[2024-05-14 17:31:26] 2024-05-14 15:31:10,247 | INFO     | sum of deviations: 1709012553517.9995
[2024-05-14 17:31:26] 2024-05-14 15:31:10,247 | INFO     | mean x: 1715668723.5
[2024-05-14 17:31:26] 2024-05-14 15:31:10,247 | INFO     | mean y: 2663429.647969052
[2024-05-14 17:31:26] 2024-05-14 15:31:10,247 | INFO     | -- intersect: -8550741901.323245
[2024-05-14 17:31:26] 2024-05-14 15:31:10,247 | INFO     | intersect: -8550741901.323245
[2024-05-14 17:31:26] 2024-05-14 15:31:10,248 | INFO     | chi2: 5.15096204598283
[2024-05-14 17:31:26] 2024-05-14 15:31:10,248 | INFO     | -- intersect: -8550741901.323245
[2024-05-14 17:31:26] 2024-05-14 15:31:10,248 | INFO     | current memory leak: 4.99 B/s (using 1034 data points, chi2=5.15)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,248 | INFO     | ..............................
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . Timing measurements:
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . get job = 0 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . initial setup = 1 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . payload setup = 13 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . stage-in = 0 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . payload execution = 64053 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . stage-out = 2 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | . log creation = 0 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,249 | INFO     | ..............................
[2024-05-14 17:31:26] 2024-05-14 15:31:10,304 | INFO     | 
[2024-05-14 17:31:26] 2024-05-14 15:31:10,306 | INFO     | job summary report
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | --------------------------------------------------
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | PanDA job id: 6198694037
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | task id: 38734053
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | errors: (none)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | pilot state: finished 
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | transexitcode: 0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | exeerrorcode: 0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | exeerrordiag: 
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | exitcode: 0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,307 | INFO     | exitmsg: OK
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | cpuconsumptiontime: 249179 s
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | nevents: 2050
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | neventsw: 0
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | pid: 2297545
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | pgrp: 2297545
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | corecount: 4
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | event service: False
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | sizes: {0: 2385967, 1: 2386166, 8: 2386372, 11: 2386400, 64071: 2460098, 64073: 2469266, 64083: 2469432}
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | --------------------------------------------------
[2024-05-14 17:31:26] 2024-05-14 15:31:10,308 | INFO     | 
[2024-05-14 17:31:26] 2024-05-14 15:31:10,309 | INFO     | executing command: ls -lF /scratch/boinc/var/slot120/slots/1
[2024-05-14 17:31:26] 2024-05-14 15:31:10,330 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,330 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,330 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,330 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,330 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,330 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,330 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,331 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,332 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,332 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-14 17:31:26] 2024-05-14 15:31:10,332 | INFO     | job 6198694037 has completed (purged errors)
[2024-05-14 17:31:26] 2024-05-14 15:31:10,332 | INFO     | overall cleanup function is called
[2024-05-14 17:31:26] 2024-05-14 15:31:11,343 | INFO     | --- collectZombieJob: --- 10, [2297545]
[2024-05-14 17:31:26] 2024-05-14 15:31:11,343 | INFO     | zombie collector waiting for pid 2297545
[2024-05-14 17:31:26] 2024-05-14 15:31:11,344 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-14 17:31:26] 2024-05-14 15:31:12,348 | INFO     | collected zombie processes
[2024-05-14 17:31:26] 2024-05-14 15:31:12,348 | INFO     | will now attempt to kill all subprocesses of pid=2297545
[2024-05-14 17:31:26] 2024-05-14 15:31:12,597 | INFO     | process IDs to be killed: [2297545] (in reverse order)
[2024-05-14 17:31:26] 2024-05-14 15:31:12,858 | WARNING  | found no corresponding commands to process id(s)
[2024-05-14 17:31:26] 2024-05-14 15:31:12,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-14 17:31:26] 2024-05-14 15:31:12,876 | INFO     | did not find any defunct processes belonging to 2297545
[2024-05-14 17:31:26] 2024-05-14 15:31:12,890 | INFO     | did not find any defunct processes belonging to 2297545
[2024-05-14 17:31:26] 2024-05-14 15:31:12,891 | INFO     | ready for new job
[2024-05-14 17:31:26] 2024-05-14 15:31:12,891 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-14 17:31:26] 2024-05-14 15:31:12,897 | INFO     | **************************************
[2024-05-14 17:31:26] 2024-05-14 15:31:12,897 | INFO     | ***  PanDA Pilot version 3.7.3.84  ***
[2024-05-14 17:31:26] 2024-05-14 15:31:12,897 | INFO     | **************************************
[2024-05-14 17:31:26] 2024-05-14 15:31:12,897 | INFO     | 
[2024-05-14 17:31:26] 2024-05-14 15:31:12,904 | INFO     | architecture information:
[2024-05-14 17:31:26] 2024-05-14 15:31:12,906 | INFO     | executing command: cat /etc/os-release
[2024-05-14 17:31:26] 2024-05-14 15:31:12,929 | INFO     | cat /etc/os-release:
[2024-05-14 17:31:26] NAME="CentOS Linux"
[2024-05-14 17:31:26] VERSION="7 (Core)"
[2024-05-14 17:31:26] ID="centos"
[2024-05-14 17:31:26] ID_LIKE="rhel fedora"
[2024-05-14 17:31:26] VERSION_ID="7"
[2024-05-14 17:31:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-14 17:31:26] ANSI_COLOR="0;31"
[2024-05-14 17:31:26] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-14 17:31:26] HOME_URL="https://www.centos.org/"
[2024-05-14 17:31:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-14 17:31:26] 
[2024-05-14 17:31:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-14 17:31:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-14 17:31:26] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-14 17:31:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-14 17:31:26] 
[2024-05-14 17:31:26] 2024-05-14 15:31:12,929 | INFO     | **************************************
[2024-05-14 17:31:26] 2024-05-14 15:31:13,431 | INFO     | executing command: df -mP /scratch/boinc/var/slot120/slots/1
[2024-05-14 17:31:26] 2024-05-14 15:31:13,451 | INFO     | sufficient remaining disk space (3018386833408 B)
[2024-05-14 17:31:26] 2024-05-14 15:31:13,452 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-14 17:31:26] 2024-05-14 15:31:13,452 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-14 17:31:26] 2024-05-14 15:31:13,452 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-14 17:31:26] 2024-05-14 15:31:13,475 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-14 17:31:26] 2024-05-14 15:31:13,476 | INFO     | aborting loop
[2024-05-14 17:31:26] 2024-05-14 15:31:13,850 | INFO     | found 0 job(s) in 20 queues
[2024-05-14 17:31:26] 2024-05-14 15:31:13,851 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-14 17:31:26] 2024-05-14 15:31:13,851 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-14 17:31:26] 2024-05-14 15:31:13,901 | INFO     | all payload control threads have been joined
[2024-05-14 17:31:26] 2024-05-14 15:31:14,272 | INFO     | all data control threads have been joined
[2024-05-14 17:31:26] 2024-05-14 15:31:14,457 | INFO     | [job] retrieve thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:14,480 | INFO     | [job] job monitor thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:14,522 | INFO     | [data] copytool_in thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:14,600 | INFO     | all job control threads have been joined
[2024-05-14 17:31:26] 2024-05-14 15:31:14,838 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:14,849 | INFO     | [job] validate thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:14,906 | INFO     | [payload] control thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:14,980 | INFO     | [payload] validate_post thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:15,038 | INFO     | [payload] failed_post thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:15,100 | INFO     | [job] create_data_payload thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:15,278 | INFO     | [data] control thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:15,314 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-14 17:31:26] 2024-05-14 15:31:15,316 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-14 17:31:26] 2024-05-14 15:31:15,347 | INFO     | [payload] execute_payloads thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:15,457 | INFO     | [data] copytool_out thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:15,601 | INFO     | [payload] validate_pre thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:15,605 | INFO     | [job] control thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:16,319 | INFO     | [job] queue monitor thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:19,322 | INFO     | [data] queue_monitor thread has finished
[2024-05-14 17:31:26] 2024-05-14 15:31:19,879 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47591690806336)>', '<ExcThread(monitor, started 47592199161600)>']
[2024-05-14 17:31:26] 2024-05-14 15:31:20,883 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-14 17:31:26] 2024-05-14 15:31:20,883 | INFO     | [monitor] control thread has ended
[2024-05-14 17:31:26] 2024-05-14 15:31:24,904 | INFO     | all workflow threads have been joined
[2024-05-14 17:31:26] 2024-05-14 15:31:24,904 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-14 17:31:26] 2024-05-14 15:31:24,905 | INFO     | traces error code: 0
[2024-05-14 17:31:26] 2024-05-14 15:31:24,905 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-14 17:31:26] 2024-05-14 15:31:25,068 [wrapper] ==== pilot stdout END ====
[2024-05-14 17:31:26] 2024-05-14 15:31:25,072 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-14 17:31:26] 2024-05-14 15:31:25,073 [wrapper] pilotpid: 2283923
[2024-05-14 17:31:26] 2024-05-14 15:31:25,074 [wrapper] Pilot exit status: 0
[2024-05-14 17:31:26] 2024-05-14 15:31:25,100 [wrapper] pandaids: 6198694037
[2024-05-14 17:31:26] 2024-05-14 15:31:25,221 [wrapper] cleanup: SIGTERM to supervisor_pilot  416700 2283924
[2024-05-14 17:31:26] 2024-05-14 15:31:25,223 [wrapper] Test setup, not cleaning
[2024-05-14 17:31:26] 2024-05-14 15:31:25,225 [wrapper] ==== wrapper stdout END ====
[2024-05-14 17:31:26] 2024-05-14 15:31:25,227 [wrapper] ==== wrapper stderr END ====
[2024-05-14 17:31:26] 2024-05-14 15:31:25,230 [wrapper] apfmon messages muted
[2024-05-14 17:31:26]  *** Error codes and diagnostics ***
[2024-05-14 17:31:26]     "exeErrorCode": 0,
[2024-05-14 17:31:26]     "exeErrorDiag": "",
[2024-05-14 17:31:26]     "pilotErrorCode": 0,
[2024-05-14 17:31:26]     "pilotErrorDiag": "",
[2024-05-14 17:31:26]  *** Listing of results directory ***
[2024-05-14 17:31:26] total 1571848
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc     468928 May  8 05:39 pilot3.tar.gz
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc       5634 May  8 05:41 queuedata.json
[2024-05-14 17:31:26] -rwx------ 1 boinc boinc      32251 May  8 05:41 runpilot2-wrapper.sh
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc        100 May 13 23:42 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-14 17:31:26] -rwxr-xr-x 1 boinc boinc       7986 May 13 23:42 run_atlas
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc        105 May 13 23:42 job.xml
[2024-05-14 17:31:26] -rw-r--r-- 2 boinc boinc  327606344 May 13 23:42 EVNT.38734051._000145.pool.root.1
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc       6644 May 13 23:42 init_data.xml
[2024-05-14 17:31:26] drwxrwx--x 2 boinc boinc       4096 May 13 23:42 shared
[2024-05-14 17:31:26] -rw-r--r-- 2 boinc boinc     481742 May 13 23:42 input.tar.gz
[2024-05-14 17:31:26] -rw-r--r-- 2 boinc boinc      17539 May 13 23:42 start_atlas.sh
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc          0 May 13 23:42 boinc_lockfile
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc       2851 May 13 23:42 pandaJob.out
[2024-05-14 17:31:26] -rw------- 1 boinc boinc        424 May 13 23:42 setup.sh.local
[2024-05-14 17:31:26] -rw------- 1 boinc boinc    1003404 May 13 23:42 agis_schedconf.cvmfs.json
[2024-05-14 17:31:26] -rw------- 1 boinc boinc    1319809 May 13 23:42 cric_ddmendpoints.json
[2024-05-14 17:31:26] drwx------ 4 boinc boinc       4096 May 13 23:42 pilot3
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc        533 May 14 17:21 boinc_task_state.xml
[2024-05-14 17:31:26] -rw------- 1 boinc boinc         95 May 14 17:30 pilot_heartbeat.json
[2024-05-14 17:31:26] -rw------- 1 boinc boinc 1253336584 May 14 17:30 HITS.38734053._000737.pool.root.1
[2024-05-14 17:31:26] -rw------- 1 boinc boinc       1064 May 14 17:30 memory_monitor_summary.json
[2024-05-14 17:31:26] -rw------- 1 boinc boinc          0 May 14 17:30 agis_ddmendpoints.agis.ALL.json
[2024-05-14 17:31:26] -rw------- 1 boinc boinc    1962073 May 14 17:30 log.38734053._000737.job.log.tgz.1
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc       8192 May 14 17:31 boinc_mmap_file
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc         29 May 14 17:31 wrapper_checkpoint.txt
[2024-05-14 17:31:26] -rw------- 1 boinc boinc      27695 May 14 17:31 heartbeat.json
[2024-05-14 17:31:26] -rw------- 1 boinc boinc       4227 May 14 17:31 pilotlog.txt
[2024-05-14 17:31:26] -rw------- 1 boinc boinc   10573310 May 14 17:31 log.38734053._000737.job.log.1
[2024-05-14 17:31:26] -rw------- 1 boinc boinc        353 May 14 17:31 output.list
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc        620 May 14 17:31 runtime_log
[2024-05-14 17:31:26] -rw------- 1 boinc boinc   12574720 May 14 17:31 result.tar.gz
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc      11430 May 14 17:31 runtime_log.err
[2024-05-14 17:31:26] -rw------- 1 boinc boinc        667 May 14 17:31 6kBODmZMnO5n9Rq4apoT9bVoABFKDmABFKDmlqFKDmtOFKDm1Rw0Jn.diag
[2024-05-14 17:31:26] -rw-r--r-- 1 boinc boinc      21721 May 14 17:31 stderr.txt
[2024-05-14 17:31:26] HITS file was successfully produced:
[2024-05-14 17:31:26] -rw------- 1 boinc boinc 1253336584 May 14 17:30 shared/HITS.pool.root.1
[2024-05-14 17:31:26]  *** Contents of shared directory: ***
[2024-05-14 17:31:26] total 1556676
[2024-05-14 17:31:26] -rw-r--r-- 2 boinc boinc  327606344 May 13 23:42 ATLAS.root_0
[2024-05-14 17:31:26] -rw-r--r-- 2 boinc boinc     481742 May 13 23:42 input.tar.gz
[2024-05-14 17:31:26] -rw-r--r-- 2 boinc boinc      17539 May 13 23:42 start_atlas.sh
[2024-05-14 17:31:26] -rw------- 1 boinc boinc 1253336584 May 14 17:30 HITS.pool.root.1
[2024-05-14 17:31:26] -rw------- 1 boinc boinc   12574720 May 14 17:31 result.tar.gz
17:31:27 (2276905): run_atlas exited; CPU time 246356.116223
17:31:27 (2276905): called boinc_finish(0)

</stderr_txt>
]]>

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