Stderr output

<core_client_version>8.0.0</core_client_version>
<![CDATA[
<stderr_txt>
2024-05-04 12:35:31 (11216): Detected: vboxwrapper 26206
2024-05-04 12:35:31 (11216): Detected: BOINC client v8.0.0
2024-05-04 12:35:31 (11216): Detected: VirtualBox VboxManage Interface (Version: 7.0.16)
2024-05-04 12:35:32 (11216): Successfully copied 'init_data.xml' to the shared directory.
2024-05-04 12:35:32 (11216): Create VM. (boinc_21cc23bcb3a78828, slot#6)
2024-05-04 12:35:33 (11216): Setting Memory Size for VM. (3584MB)
2024-05-04 12:35:33 (11216): Setting CPU Count for VM. (1)
2024-05-04 12:35:33 (11216): Setting Chipset Options for VM.
2024-05-04 12:35:34 (11216): Setting Graphics Controller Options for VM.
2024-05-04 12:35:34 (11216): Setting Boot Options for VM.
2024-05-04 12:35:34 (11216): Setting Network Configuration for NAT.
2024-05-04 12:35:34 (11216): Enabling VM Network Access.
2024-05-04 12:35:35 (11216): Disabling USB Support for VM.
2024-05-04 12:35:35 (11216): Disabling COM Port Support for VM.
2024-05-04 12:35:35 (11216): Disabling LPT Port Support for VM.
2024-05-04 12:35:35 (11216): Disabling Audio Support for VM.
2024-05-04 12:35:36 (11216): Disabling Clipboard Support for VM.
2024-05-04 12:35:36 (11216): Disabling Drag and Drop Support for VM.
2024-05-04 12:35:36 (11216): Adding storage controller(s) to VM.
2024-05-04 12:35:36 (11216): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-05-04 12:35:37 (11216): Adding VirtualBox Guest Additions to VM.
2024-05-04 12:35:37 (11216): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-05-04 12:35:37 (11216): forwarding host port 60615 to guest port 80
2024-05-04 12:35:38 (11216): Enabling remote desktop for VM.
2024-05-04 12:35:38 (11216): Enabling shared directory for VM.
2024-05-04 12:35:39 (11216): Starting VM using VBoxManage interface. (boinc_21cc23bcb3a78828, slot#6)
2024-05-04 12:35:49 (11216): Successfully started VM. (PID = '516')
2024-05-04 12:35:49 (11216): Reporting VM Process ID to BOINC.
2024-05-04 12:35:49 (11216): Guest Log: BIOS: VirtualBox 7.0.16
2024-05-04 12:35:49 (11216): Guest Log: CPUID EDX: 0x178bfbff
2024-05-04 12:35:49 (11216): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-05-04 12:35:49 (11216): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-05-04 12:35:49 (11216): VM state change detected. (old = 'poweredoff', new = 'running')
2024-05-04 12:35:49 (11216): Detected: Web Application Enabled (http://localhost:60615)
2024-05-04 12:35:49 (11216): Detected: Remote Desktop Enabled (localhost:60616)
2024-05-04 12:35:49 (11216): Preference change detected
2024-05-04 12:35:49 (11216): Setting CPU throttle for VM. (100%)
2024-05-04 12:35:49 (11216): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-05-04 12:35:51 (11216): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-05-04 12:35:51 (11216): Guest Log: BIOS: Booting from Hard Disk...
2024-05-04 12:35:55 (11216): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-05-04 12:35:55 (11216): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-05-04 12:35:55 (11216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-05-04 12:36:04 (11216): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-05-04 12:36:04 (11216): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-05-04 12:36:25 (11216): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.000248 main     Log opened 2024-05-04T12:36:23.102755000Z
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.000465 main     OS Product: Linux
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.000540 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.000608 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.000656 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.000657 main     Process ID: 1225
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.000659 main     Package type: LINUX_64BITS_GENERIC
2024-05-04 12:36:25 (11216): Guest Log: 00:00:00.043374 main     5.2.32 r132073 started. Verbose level = 0
2024-05-04 12:36:25 (11216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-05-04 12:36:25 (11216): Guest Log: [INFO] Mounting shared directory
2024-05-04 12:36:25 (11216): Guest Log: [INFO] Checking for init_data.xml
2024-05-04 12:36:28 (11216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-05-04 12:36:28 (11216): Guest Log: [INFO] Detected branch: prod
2024-05-04 12:36:28 (11216): Guest Log: This is the prod version of the ATLAS job wrapper
2024-05-04 12:36:28 (11216): Guest Log: Copying input files
2024-05-04 12:36:35 (11216): Guest Log: 00:00:10.114115 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 557 753 000ns (GuestNow=1 714 818 994 658 341 000 ns GuestLast=1 714 826 183 216 094 000 ns fSetTimeLastLoop=true )
2024-05-04 12:36:38 (11216): Guest Log: Copied input files into RunAtlas.
2024-05-04 12:36:38 (11216): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-05-04 12:36:46 (11216): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-05-04 12:36:46 (11216): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-05-04 12:36:46 (11216): Guest Log: 2.6.3.0 1494 0 29512 132365 3 1 3116989 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-05-04 12:36:48 (11216): Guest Log: copied the webapp to /var/www
2024-05-04 12:36:48 (11216): Guest Log: core_number=1
2024-05-04 12:36:48 (11216): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-05-04 12:36:49 (11216): Guest Log:  *** Starting ATLAS job. (PandaID=6187545088 taskID=38204343) ***
2024-05-04 14:15:54 (11216): Status Report: Elapsed Time: '6000.000000'
2024-05-04 14:15:54 (11216): Status Report: CPU Time: '3847.031250'
2024-05-04 15:56:00 (11216): Status Report: Elapsed Time: '12000.000000'
2024-05-04 15:56:00 (11216): Status Report: CPU Time: '8303.000000'
2024-05-04 17:36:05 (11216): Status Report: Elapsed Time: '18000.000000'
2024-05-04 17:36:05 (11216): Status Report: CPU Time: '12015.828125'
2024-05-04 19:16:11 (11216): Status Report: Elapsed Time: '24000.000000'
2024-05-04 19:16:11 (11216): Status Report: CPU Time: '16075.750000'
2024-05-04 20:56:16 (11216): Status Report: Elapsed Time: '30000.000000'
2024-05-04 20:56:16 (11216): Status Report: CPU Time: '19938.609375'
2024-05-04 22:36:21 (11216): Status Report: Elapsed Time: '36000.000000'
2024-05-04 22:36:21 (11216): Status Report: CPU Time: '24056.421875'
2024-05-05 00:16:26 (11216): Status Report: Elapsed Time: '42000.000000'
2024-05-05 00:16:26 (11216): Status Report: CPU Time: '28131.890625'
2024-05-05 01:56:32 (11216): Status Report: Elapsed Time: '48000.000000'
2024-05-05 01:56:32 (11216): Status Report: CPU Time: '32484.359375'
2024-05-05 03:36:37 (11216): Status Report: Elapsed Time: '54000.000000'
2024-05-05 03:36:37 (11216): Status Report: CPU Time: '36668.703125'
2024-05-05 05:16:43 (11216): Status Report: Elapsed Time: '60000.000000'
2024-05-05 05:16:43 (11216): Status Report: CPU Time: '40815.953125'
2024-05-05 05:20:29 (11216): Guest Log:  *** Job finished ***
2024-05-05 05:20:29 (11216): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:18,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:18,755 | INFO     | [job] queue monitor thread has finished
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:22,322 | INFO     | [data] queue_monitor thread has finished
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:22,639 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944711665472)>', '<ExcThread(monitor, started 139944412550912)>']
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:22,954 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:22,954 | INFO     | [monitor] control thread has ended
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,644 | INFO     | all workflow threads have been joined
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,645 | INFO     | end of generic workflow (traces error code: 0)
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,645 | INFO     | traces error code: 0
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,645 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,895 [wrapper] ==== pilot stdout END ====
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,898 [wrapper] ==== wrapper stdout RESUME ====
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,901 [wrapper] pilotpid: 6317
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,905 [wrapper] Pilot exit status: 0
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:27,978 [wrapper] pandaids: 6187545088
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:28,011 [wrapper] cleanup: SIGTERM to supervisor_pilot 32079 6318
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:28,017 [wrapper] Test setup, not cleaning
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:28,023 [wrapper] ==== wrapper stdout END ====
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:28,028 [wrapper] ==== wrapper stderr END ====
2024-05-05 05:20:29 (11216): Guest Log: 2024-05-05 03:20:28,035 [wrapper] apfmon messages muted
2024-05-05 05:20:29 (11216): Guest Log:  *** Error codes and diagnostics ***
2024-05-05 05:20:29 (11216): Guest Log:     "exeErrorCode": 0,
2024-05-05 05:20:29 (11216): Guest Log:     "exeErrorDiag": "",
2024-05-05 05:20:29 (11216): Guest Log:     "pilotErrorCode": 0,
2024-05-05 05:20:29 (11216): Guest Log:     "pilotErrorDiag": "",
2024-05-05 05:20:29 (11216): Guest Log:  *** Listing of results directory ***
2024-05-05 05:20:29 (11216): Guest Log: total 185312
2024-05-05 05:20:29 (11216): Guest Log: -rwx------. 1 atlas atlas     32211 Apr 26 07:33 runpilot2-wrapper.sh
2024-05-05 05:20:29 (11216): Guest Log: -rw-r--r--. 1 atlas atlas      6173 Apr 26 07:33 queuedata.json
2024-05-05 05:20:29 (11216): Guest Log: -rw-r--r--. 1 atlas atlas    462745 Apr 26 07:33 pilot3.tar.gz
2024-05-05 05:20:29 (11216): Guest Log: -rwxr-xr-x. 1 atlas atlas      9312 May  4 10:36 init_data.xml
2024-05-05 05:20:29 (11216): Guest Log: -rwxr-xr-x. 1 atlas atlas    474775 May  4 10:36 input.tar.gz
2024-05-05 05:20:29 (11216): Guest Log: -rwxr-xr-x. 1 atlas atlas     17537 May  4 10:36 start_atlas.sh
2024-05-05 05:20:29 (11216): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May  4 10:36 EVNT.38204341._000486.pool.root.1 -> /data/./ATLAS.root_0
2024-05-05 05:20:29 (11216): Guest Log: -rw-r--r--. 1 atlas atlas      2606 May  4 10:36 pandaJob.out
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas       460 May  4 10:36 setup.sh.local
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas   1005298 May  4 10:37 agis_schedconf.cvmfs.json
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas   1317658 May  4 10:37 cric_ddmendpoints.json
2024-05-05 05:20:29 (11216): Guest Log: drwx------. 4 atlas atlas      4096 May  4 10:37 pilot3
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas 174567512 May  5 03:19 HITS.38204343._012670.pool.root.1
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas      1021 May  5 03:19 memory_monitor_summary.json
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas        95 May  5 03:20 pilot_heartbeat.json
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas         0 May  5 03:20 agis_ddmendpoints.agis.ALL.json
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas    666505 May  5 03:20 log.38204343._012670.job.log.tgz.1
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas      7697 May  5 03:20 heartbeat.json
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas      4457 May  5 03:20 pilotlog.txt
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas   5216572 May  5 03:20 log.38204343._012670.job.log.1
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas       357 May  5 03:20 output.list
2024-05-05 05:20:29 (11216): Guest Log: -rw-r--r--. 1 atlas atlas       620 May  5 03:20 runtime_log
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas   5898240 May  5 03:20 result.tar.gz
2024-05-05 05:20:29 (11216): Guest Log: -rw-r--r--. 1 atlas atlas     11164 May  5 03:20 runtime_log.err
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas       645 May  5 03:20 D9ZKDm1FVK5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmmyJKDm5kojwm.diag
2024-05-05 05:20:29 (11216): Guest Log: Looking for outputfile HITS.38204343._012670.pool.root.1
2024-05-05 05:20:29 (11216): Guest Log: HITS file was successfully produced
2024-05-05 05:20:29 (11216): Guest Log: -rw-------. 1 atlas atlas 174567512 May  5 03:19 /home/atlas/RunAtlas/HITS.38204343._012670.pool.root.1
2024-05-05 05:20:32 (11216): Guest Log: Successfully finished the ATLAS job!
2024-05-05 05:20:32 (11216): Guest Log: Copying the results back to the shared directory!
2024-05-05 05:20:32 (11216): Guest Log:  *** Contents of shared directory: ***
2024-05-05 05:20:32 (11216): Guest Log: total 614816
2024-05-05 05:20:32 (11216): Guest Log: -rwxrwxrwx. 1 root root 448593245 May  4 10:35 ATLAS.root_0
2024-05-05 05:20:32 (11216): Guest Log: -rwxrwxrwx. 1 root root 174567512 May  5 03:20 HITS.pool.root.1
2024-05-05 05:20:32 (11216): Guest Log: -rwxrwxrwx. 1 root root      9312 May  4 10:35 init_data.xml
2024-05-05 05:20:32 (11216): Guest Log: -rwxrwxrwx. 1 root root    474775 May  4 10:35 input.tar.gz
2024-05-05 05:20:32 (11216): Guest Log: -rwxrwxrwx. 1 root root   5898240 May  5 03:20 result.tar.gz
2024-05-05 05:20:32 (11216): Guest Log: -rwxrwxrwx. 1 root root     17537 May  4 10:35 start_atlas.sh
2024-05-05 05:20:32 (11216): Guest Log:  *** Success! Shutting down the machine. ***
2024-05-05 05:20:32 (11216): VM Completion File Detected.
2024-05-05 05:20:32 (11216): Powering off VM.
2024-05-05 05:20:33 (11216): Successfully stopped VM.
2024-05-05 05:20:33 (11216): Deregistering VM. (boinc_21cc23bcb3a78828, slot#6)
2024-05-05 05:20:33 (11216): Removing network bandwidth throttle group from VM.
2024-05-05 05:20:34 (11216): Removing VM from VirtualBox.
05:20:39 (11216): called boinc_finish(0)

</stderr_txt>
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