Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:00:45 (1714018): wrapper (7.7.26015): starting
03:00:45 (1714018): wrapper: running run_atlas (--nthreads 4)
[2024-05-03 03:00:45] Arguments: --nthreads 4
[2024-05-03 03:00:45] Threads: 4
[2024-05-03 03:00:45] Checking for CVMFS
[2024-05-03 03:00:45] No cvmfs_config command found, will try listing directly
[2024-05-03 03:00:45] CVMFS is ok
[2024-05-03 03:00:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-03 03:00:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-03 03:00:45] Further information can be found at the LHC@home message board.
[2024-05-03 03:00:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-03 03:00:45] Checking for apptainer binary...
[2024-05-03 03:00:45] which: no apptainer in ((null))
[2024-05-03 03:00:45] apptainer is not installed, using version from CVMFS
[2024-05-03 03:00:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-03 03:00:46] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2024-05-03 03:00:46] apptainer works
[2024-05-03 03:00:46] Set ATHENA_PROC_NUMBER=4
[2024-05-03 03:00:46] Set ATHENA_CORE_NUMBER=4
[2024-05-03 03:00:46] Starting ATLAS job with PandaID=6184281883
[2024-05-03 03:00:46] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-03 03:29:24]  *** The last 200 lines of the pilot log: ***
[2024-05-03 03:29:24] 2024-05-03 01:29:09,809 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6184281883/memory_monitor_summary.json (trf name=prmon)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | INFO     | extracted standard info from prmon json
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | INFO     | extracted standard memory fields from prmon json
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-03 03:29:24] 2024-05-03 01:29:09,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | fitting pss+swap vs Time
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | current memory leak: 414.64 B/s (using 19 data points, chi2=0.64)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | ..............................
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | . Timing measurements:
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . get job = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . initial setup = 1 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . payload setup = 5 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . stage-in = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . payload execution = 1548 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . stage-out = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . log creation = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | ..............................
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6184281883/pilotlog.txt
[2024-05-03 03:29:24] 2024-05-03 01:29:09,828 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2024-05-03 03:29:24] - Log from pilotlog.txt -
[2024-05-03 03:29:24] 2024-05-03 01:29:09,809 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-03 03:29:24] 2024-05-03 01:29:09,809 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6184281883/memory_monitor_summary.json (trf name=prmon)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | INFO     | extracted standard info from prmon json
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | INFO     | extracted standard memory fields from prmon json
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-03 03:29:24] 2024-05-03 01:29:09,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | fitting pss+swap vs Time
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | current memory leak: 414.64 B/s (using 19 data points, chi2=0.64)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | ..............................
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | . Timing measurements:
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . get job = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . initial setup = 1 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . payload setup = 5 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . stage-in = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . payload execution = 1548 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . stage-out = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . log creation = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | ..............................
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6184281883/pilotlog.txt
[2024-05-03 03:29:24] 2024-05-03 01:29:09,829 | WARNING  | 
[2024-05-03 03:29:24] [begin log extracts]
[2024-05-03 03:29:24] - Log from pilotlog.txt -
[2024-05-03 03:29:24] 2024-05-03 01:29:09,809 | INFO     | CPU arch script returned: x86-64-v3
[2024-05-03 03:29:24] 2024-05-03 01:29:09,809 | INFO     | using path: /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6184281883/memory_monitor_summary.json (trf name=prmon)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | INFO     | extracted standard info from prmon json
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | INFO     | extracted standard memory fields from prmon json
[2024-05-03 03:29:24] 2024-05-03 01:29:09,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-05-03 03:29:24] 2024-05-03 01:29:09,812 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | fitting pss+swap vs Time
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | current memory leak: 414.64 B/s (using 19 data points, chi2=0.64)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | ..............................
[2024-05-03 03:29:24] 2024-05-03 01:29:09,813 | INFO     | . Timing measurements:
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . get job = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . initial setup = 1 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . payload setup = 5 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . stage-in = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . payload execution = 1548 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . stage-out = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | . log creation = 0 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | ..............................
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2024-05-03 03:29:24] 2024-05-03 01:29:09,814 | INFO     | executing command: tail -n 20 /scratch/boinc/var/slot100/slots/0/PanDA_Pilot-6184281883/pilotlog.txt
[2024-05-03 03:29:24] [end log extracts]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,829 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,829 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute 2024-05-03 03:27:01,145 CRITICAL Transform executor raised TransformValidationExcep
[2024-05-03 03:29:24] 2024-05-03 01:29:09,913 | INFO     | 
[2024-05-03 03:29:24] 2024-05-03 01:29:09,913 | INFO     | job summary report
[2024-05-03 03:29:24] 2024-05-03 01:29:09,913 | INFO     | --------------------------------------------------
[2024-05-03 03:29:24] 2024-05-03 01:29:09,913 | INFO     | PanDA job id: 6184281883
[2024-05-03 03:29:24] 2024-05-03 01:29:09,913 | INFO     | task id: 38203151
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2024-05-03 03:27:01,145 CRITICAL Transform executor raised TransformValidationExceptio
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | status: LOG_TRANSFER = DONE 
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | pilot state: failed 
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | transexitcode: 65
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | exeerrorcode: 65
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | exitcode: 65
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | cpuconsumptiontime: 153 s
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | nevents: 0
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | neventsw: 0
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | pid: 1726511
[2024-05-03 03:29:24] 2024-05-03 01:29:09,914 | INFO     | pgrp: 1726511
[2024-05-03 03:29:24] 2024-05-03 01:29:09,915 | INFO     | corecount: 4
[2024-05-03 03:29:24] 2024-05-03 01:29:09,915 | INFO     | event service: False
[2024-05-03 03:29:24] 2024-05-03 01:29:09,915 | INFO     | sizes: {0: 2380668, 1: 2380867, 5: 2381073, 11: 2381129, 1554: 2385782, 1555: 2390075, 1557: 2414651, 1558: 2414651, 1678: 2414821}
[2024-05-03 03:29:24] 2024-05-03 01:29:09,915 | INFO     | --------------------------------------------------
[2024-05-03 03:29:24] 2024-05-03 01:29:09,915 | INFO     | 
[2024-05-03 03:29:24] 2024-05-03 01:29:09,915 | INFO     | executing command: ls -lF /scratch/boinc/var/slot100/slots/0
[2024-05-03 03:29:24] 2024-05-03 01:29:09,941 | INFO     | queue jobs had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,941 | INFO     | queue payloads had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,941 | INFO     | queue data_in had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,941 | INFO     | queue data_out had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,941 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,942 | INFO     | queue completed_jobids has 1 job(s)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,943 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,943 | INFO     | queue messages had 0 job(s) [purged]
[2024-05-03 03:29:24] 2024-05-03 01:29:09,943 | INFO     | job 6184281883 has completed (purged errors)
[2024-05-03 03:29:24] 2024-05-03 01:29:09,943 | INFO     | overall cleanup function is called
[2024-05-03 03:29:24] 2024-05-03 01:29:10,949 | INFO     | --- collectZombieJob: --- 10, [1726511]
[2024-05-03 03:29:24] 2024-05-03 01:29:10,950 | INFO     | zombie collector waiting for pid 1726511
[2024-05-03 03:29:24] 2024-05-03 01:29:10,950 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-05-03 03:29:24] 2024-05-03 01:29:11,955 | INFO     | collected zombie processes
[2024-05-03 03:29:24] 2024-05-03 01:29:11,955 | INFO     | will now attempt to kill all subprocesses of pid=1726511
[2024-05-03 03:29:24] 2024-05-03 01:29:12,169 | INFO     | process IDs to be killed: [1726511] (in reverse order)
[2024-05-03 03:29:24] 2024-05-03 01:29:12,332 | WARNING  | found no corresponding commands to process id(s)
[2024-05-03 03:29:24] 2024-05-03 01:29:12,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-05-03 03:29:24] 2024-05-03 01:29:12,347 | INFO     | did not find any defunct processes belonging to 1726511
[2024-05-03 03:29:24] 2024-05-03 01:29:12,359 | INFO     | did not find any defunct processes belonging to 1726511
[2024-05-03 03:29:24] 2024-05-03 01:29:12,360 | INFO     | ready for new job
[2024-05-03 03:29:24] 2024-05-03 01:29:12,360 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-05-03 03:29:24] 2024-05-03 01:29:12,361 | INFO     | *************************************
[2024-05-03 03:29:24] 2024-05-03 01:29:12,361 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-05-03 03:29:24] 2024-05-03 01:29:12,362 | INFO     | *************************************
[2024-05-03 03:29:24] 2024-05-03 01:29:12,362 | INFO     | 
[2024-05-03 03:29:24] 2024-05-03 01:29:12,367 | INFO     | architecture information:
[2024-05-03 03:29:24] 2024-05-03 01:29:12,368 | INFO     | executing command: cat /etc/os-release
[2024-05-03 03:29:24] 2024-05-03 01:29:12,388 | INFO     | cat /etc/os-release:
[2024-05-03 03:29:24] NAME="CentOS Linux"
[2024-05-03 03:29:24] VERSION="7 (Core)"
[2024-05-03 03:29:24] ID="centos"
[2024-05-03 03:29:24] ID_LIKE="rhel fedora"
[2024-05-03 03:29:24] VERSION_ID="7"
[2024-05-03 03:29:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-05-03 03:29:24] ANSI_COLOR="0;31"
[2024-05-03 03:29:24] CPE_NAME="cpe:/o:centos:centos:7"
[2024-05-03 03:29:24] HOME_URL="https://www.centos.org/"
[2024-05-03 03:29:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-05-03 03:29:24] 
[2024-05-03 03:29:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-05-03 03:29:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-05-03 03:29:24] REDHAT_SUPPORT_PRODUCT="centos"
[2024-05-03 03:29:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-05-03 03:29:24] 
[2024-05-03 03:29:24] 2024-05-03 01:29:12,389 | INFO     | *************************************
[2024-05-03 03:29:24] 2024-05-03 01:29:12,892 | INFO     | executing command: df -mP /scratch/boinc/var/slot100/slots/0
[2024-05-03 03:29:24] 2024-05-03 01:29:12,915 | INFO     | sufficient remaining disk space (3190668918784 B)
[2024-05-03 03:29:24] 2024-05-03 01:29:12,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-05-03 03:29:24] 2024-05-03 01:29:12,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-05-03 03:29:24] 2024-05-03 01:29:12,916 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-05-03 03:29:24] 2024-05-03 01:29:12,916 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-03 03:29:24] 2024-05-03 01:29:12,916 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-03 03:29:24] 2024-05-03 01:29:12,917 | INFO     | found 0 job(s) in 20 queues
[2024-05-03 03:29:24] 2024-05-03 01:29:12,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-03 03:29:24] 2024-05-03 01:29:12,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-05-03 03:29:24] 2024-05-03 01:29:13,011 | INFO     | all job control threads have been joined
[2024-05-03 03:29:24] 2024-05-03 01:29:13,192 | INFO     | all payload control threads have been joined
[2024-05-03 03:29:24] 2024-05-03 01:29:13,311 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-05-03 03:29:24] 2024-05-03 01:29:13,312 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-05-03 03:29:24] 2024-05-03 01:29:13,312 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-03 03:29:24] 2024-05-03 01:29:13,312 | INFO     | will abort loop
[2024-05-03 03:29:24] 2024-05-03 01:29:13,549 | INFO     | all data control threads have been joined
[2024-05-03 03:29:24] 2024-05-03 01:29:13,921 | INFO     | [job] retrieve thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,016 | INFO     | [job] control thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,197 | INFO     | [payload] control thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,313 | INFO     | [payload] validate_post thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,316 | INFO     | [job] job monitor thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,400 | INFO     | [payload] execute_payloads thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,554 | INFO     | [data] control thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,822 | INFO     | [payload] run_realtimelog thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,877 | INFO     | [payload] failed_post thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,921 | INFO     | [data] copytool_out thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,922 | INFO     | [data] copytool_in thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:14,923 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-05-03 03:29:24] 2024-05-03 01:29:14,947 | INFO     | [job] validate thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:15,120 | INFO     | [job] create_data_payload thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:15,320 | INFO     | [payload] validate_pre thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:15,928 | INFO     | [job] queue monitor thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:16,922 | INFO     | [data] queue_monitor thread has finished
[2024-05-03 03:29:24] 2024-05-03 01:29:18,157 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47588453430336)>', '<ExcThread(monitor, started 47588620461824)>']
[2024-05-03 03:29:24] 2024-05-03 01:29:18,948 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-05-03 03:29:24] 2024-05-03 01:29:18,949 | INFO     | [monitor] control thread has ended
[2024-05-03 03:29:24] 2024-05-03 01:29:23,182 | INFO     | all workflow threads have been joined
[2024-05-03 03:29:24] 2024-05-03 01:29:23,183 | INFO     | end of generic workflow (traces error code: 0)
[2024-05-03 03:29:24] 2024-05-03 01:29:23,183 | INFO     | traces error code: 0
[2024-05-03 03:29:24] 2024-05-03 01:29:23,183 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-05-03 03:29:24] 2024-05-03 01:29:23,263 [wrapper] ==== pilot stdout END ====
[2024-05-03 03:29:24] 2024-05-03 01:29:23,266 [wrapper] ==== wrapper stdout RESUME ====
[2024-05-03 03:29:24] 2024-05-03 01:29:23,267 [wrapper] pilotpid: 1718660
[2024-05-03 03:29:24] 2024-05-03 01:29:23,269 [wrapper] Pilot exit status: 0
[2024-05-03 03:29:24] 2024-05-03 01:29:23,291 [wrapper] pandaids: 6184281883
[2024-05-03 03:29:24] 2024-05-03 01:29:23,388 [wrapper] cleanup: SIGTERM to supervisor_pilot 1779340 1718661
[2024-05-03 03:29:24] 2024-05-03 01:29:23,394 [wrapper] Test setup, not cleaning
[2024-05-03 03:29:24] 2024-05-03 01:29:23,396 [wrapper] ==== wrapper stdout END ====
[2024-05-03 03:29:24] 2024-05-03 01:29:23,398 [wrapper] ==== wrapper stderr END ====
[2024-05-03 03:29:24] 2024-05-03 01:29:23,402 [wrapper] apfmon messages muted
[2024-05-03 03:29:24]  *** Error codes and diagnostics ***
[2024-05-03 03:29:24]     "exeErrorCode": 65,
[2024-05-03 03:29:24]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2024-05-03 03:29:24]     "pilotErrorCode": 1305,
[2024-05-03 03:29:24]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-05-03 03:27:01,145 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2024-05-03 03:29:24]  *** Listing of results directory ***
[2024-05-03 03:29:24] total 514384
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc    462745 Apr 23 15:01 pilot3.tar.gz
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc      6720 Apr 23 15:10 queuedata.json
[2024-05-03 03:29:24] -rwx------ 1 boinc boinc     32211 Apr 23 15:12 runpilot2-wrapper.sh
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc       100 May  3 03:00 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-03 03:29:24] -rwxr-xr-x 1 boinc boinc      7986 May  3 03:00 run_atlas
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc       105 May  3 03:00 job.xml
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc      6646 May  3 03:00 init_data.xml
[2024-05-03 03:29:24] -rw-r--r-- 2 boinc boinc 522689181 May  3 03:00 EVNT.38203149._000472.pool.root.1
[2024-05-03 03:29:24] -rw-r--r-- 2 boinc boinc     17537 May  3 03:00 start_atlas.sh
[2024-05-03 03:29:24] drwxrwx--x 2 boinc boinc      4096 May  3 03:00 shared
[2024-05-03 03:29:24] -rw-r--r-- 2 boinc boinc    474793 May  3 03:00 input.tar.gz
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc         0 May  3 03:00 boinc_lockfile
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc      2556 May  3 03:00 pandaJob.out
[2024-05-03 03:29:24] -rw------- 1 boinc boinc       424 May  3 03:00 setup.sh.local
[2024-05-03 03:29:24] -rw------- 1 boinc boinc   1002467 May  3 03:00 agis_schedconf.cvmfs.json
[2024-05-03 03:29:24] -rw------- 1 boinc boinc         0 May  3 03:00 agis_ddmendpoints.agis.ALL.json
[2024-05-03 03:29:24] -rw------- 1 boinc boinc   1317658 May  3 03:00 cric_ddmendpoints.json
[2024-05-03 03:29:24] drwx------ 4 boinc boinc      4096 May  3 03:00 pilot3
[2024-05-03 03:29:24] -rw------- 1 boinc boinc      1029 May  3 03:27 memory_monitor_summary.json
[2024-05-03 03:29:24] -rw------- 1 boinc boinc     73227 May  3 03:27 log.38203151._012448.job.log.tgz.1
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc       528 May  3 03:27 boinc_task_state.xml
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc      8192 May  3 03:29 boinc_mmap_file
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc        24 May  3 03:29 wrapper_checkpoint.txt
[2024-05-03 03:29:24] -rw------- 1 boinc boinc        95 May  3 03:29 pilot_heartbeat.json
[2024-05-03 03:29:24] -rw------- 1 boinc boinc     11277 May  3 03:29 heartbeat.json
[2024-05-03 03:29:24] -rw------- 1 boinc boinc      4532 May  3 03:29 pilotlog.txt
[2024-05-03 03:29:24] -rw------- 1 boinc boinc    199919 May  3 03:29 log.38203151._012448.job.log.1
[2024-05-03 03:29:24] -rw------- 1 boinc boinc       188 May  3 03:29 output.list
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc       620 May  3 03:29 runtime_log
[2024-05-03 03:29:24] -rw------- 1 boinc boinc    296960 May  3 03:29 result.tar.gz
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc     11276 May  3 03:29 runtime_log.err
[2024-05-03 03:29:24] -rw------- 1 boinc boinc       648 May  3 03:29 8XrLDmv7UJ5nsSi4apGgGQJmABFKDmABFKDmRLXKDmmhPKDmWqKUcm.diag
[2024-05-03 03:29:24] -rw-r--r-- 1 boinc boinc     22009 May  3 03:29 stderr.txt
[2024-05-03 03:29:24] No HITS result produced
[2024-05-03 03:29:24]  *** Contents of shared directory: ***
[2024-05-03 03:29:24] total 511220
[2024-05-03 03:29:24] -rw-r--r-- 2 boinc boinc 522689181 May  3 03:00 ATLAS.root_0
[2024-05-03 03:29:24] -rw-r--r-- 2 boinc boinc     17537 May  3 03:00 start_atlas.sh
[2024-05-03 03:29:24] -rw-r--r-- 2 boinc boinc    474793 May  3 03:00 input.tar.gz
[2024-05-03 03:29:24] -rw------- 1 boinc boinc    296960 May  3 03:29 result.tar.gz
03:29:25 (1714018): run_atlas exited; CPU time 128.448236
03:29:25 (1714018): called boinc_finish(0)

</stderr_txt>
]]>

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