Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:04:37 (219951): wrapper (7.7.26015): starting
07:04:37 (219951): wrapper: running run_atlas (--nthreads 8)
[2024-04-30 07:04:37] Arguments: --nthreads 8
[2024-04-30 07:04:37] Threads: 8
[2024-04-30 07:04:37] Checking for CVMFS
[2024-04-30 07:04:37] Probing /cvmfs/atlas.cern.ch... OK
[2024-04-30 07:04:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-04-30 07:04:38] Running cvmfs_config stat atlas.cern.ch
[2024-04-30 07:04:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-04-30 07:04:38] 2.11.2.0 200009 2039 230444 132207 3 128 14690563 18432000 19891 130560 0 13006265 98.397 55344649 36629 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-04-30 07:04:38] CVMFS is ok
[2024-04-30 07:04:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-30 07:04:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-30 07:04:38] Further information can be found at the LHC@home message board.
[2024-04-30 07:04:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-30 07:04:38] Checking for apptainer binary...
[2024-04-30 07:04:38] Using apptainer found in PATH at /usr/bin/apptainer
[2024-04-30 07:04:38] Running /usr/bin/apptainer --version
[2024-04-30 07:04:38] apptainer version 1.3.0-1.el7
[2024-04-30 07:04:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-30 07:04:47] c6-12-27-1.aglt2.org
[2024-04-30 07:04:47] apptainer works
[2024-04-30 07:04:47] Set ATHENA_PROC_NUMBER=8
[2024-04-30 07:04:47] Set ATHENA_CORE_NUMBER=8
[2024-04-30 07:04:47] Starting ATLAS job with PandaID=6187030741
[2024-04-30 07:04:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-30 11:55:48]  *** The last 200 lines of the pilot log: ***
[2024-04-30 11:55:48]  lfn=log.38204359._006020.job.log.tgz.1
[2024-04-30 11:55:48]  mtime=0
[2024-04-30 11:55:48]  protocol_id=None
[2024-04-30 11:55:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-30 11:55:48]  replicas=None
[2024-04-30 11:55:48]  scope=mc23_13p6TeV
[2024-04-30 11:55:48]  status=None
[2024-04-30 11:55:48]  status_code=0
[2024-04-30 11:55:48]  storage_token=
[2024-04-30 11:55:48]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6187030741/log.38204359._006020.job.log.tgz.1
[2024-04-30 11:55:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/3a/log.38204359._006020.job.log.tgz.1
[2024-04-30 11:55:48]  workdir=None
[2024-04-30 11:55:48] ]
[2024-04-30 11:55:48] 2024-04-30 15:55:09,515 | INFO     | transferring file log.38204359._006020.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6187030741/log.38204359._006020.job.log.tgz.1 to /tmp/boinchome/slots/
[2024-04-30 11:55:48] 2024-04-30 15:55:09,515 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6187030741/log.38204359._006020.job.log.tgz.1 /tmp/boinchome/slots/2/log.38204359._006020.job
[2024-04-30 11:55:48] 2024-04-30 15:55:09,690 | INFO     | adding to output.list: log.38204359._006020.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/67/3a/log.38204359._006020.job.log.tg
[2024-04-30 11:55:48] 2024-04-30 15:55:09,690 | INFO     | summary of transferred files:
[2024-04-30 11:55:48] 2024-04-30 15:55:09,691 | INFO     |  -- lfn=log.38204359._006020.job.log.tgz.1, status_code=0, status=transferred
[2024-04-30 11:55:48] 2024-04-30 15:55:09,691 | INFO     | stage-out finished correctly
[2024-04-30 11:55:48] 2024-04-30 15:55:09,835 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-30 11:55:48] 2024-04-30 15:55:10,163 | WARNING  | process 6359 is no longer using CPU - aborting
[2024-04-30 11:55:48] 2024-04-30 15:55:10,164 | INFO     | will not send any job update
[2024-04-30 11:55:48] 2024-04-30 15:55:11,788 | INFO     | job 6187030741 has state=finished
[2024-04-30 11:55:48] 2024-04-30 15:55:11,789 | INFO     | preparing for final server update for job 6187030741 in state='finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:11,789 | INFO     | this job has now completed (state=finished)
[2024-04-30 11:55:48] 2024-04-30 15:55:11,789 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-30 11:55:48] 2024-04-30 15:55:11,790 | INFO     | job 6187030741 has finished - writing final server update
[2024-04-30 11:55:48] 2024-04-30 15:55:11,790 | INFO     | total number of processed events: 400 (read)
[2024-04-30 11:55:48] 2024-04-30 15:55:11,845 | INFO     | executing command: lscpu
[2024-04-30 11:55:48] 2024-04-30 15:55:11,979 | INFO     | found 48 cores (24 cores per socket, 2 sockets)
[2024-04-30 11:55:48] 2024-04-30 15:55:11,979 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-30 11:55:48] 2024-04-30 15:55:12,197 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-30 11:55:48] 2024-04-30 15:55:12,671 | INFO     | monitor loop #1138: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:12,671 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:15,174 | INFO     | monitor loop #1139: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:15,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:17,681 | INFO     | monitor loop #1140: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:17,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:20,186 | INFO     | monitor loop #1141: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:20,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:22,692 | INFO     | monitor loop #1142: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:22,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:25,199 | INFO     | monitor loop #1143: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:25,200 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:27,703 | INFO     | monitor loop #1144: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:27,704 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:30,210 | INFO     | monitor loop #1145: job 0:6187030741 is in state 'finished'
[2024-04-30 11:55:48] 2024-04-30 15:55:30,211 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,281 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-30 11:55:48] 2024-04-30 15:55:32,282 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6187030741/memory_monitor_summary.json (trf name=prmon)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,283 | INFO     | extracted standard info from prmon json
[2024-04-30 11:55:48] 2024-04-30 15:55:32,283 | INFO     | extracted standard memory fields from prmon json
[2024-04-30 11:55:48] 2024-04-30 15:55:32,283 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-30 11:55:48] 2024-04-30 15:55:32,283 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-30 11:55:48] 2024-04-30 15:55:32,288 | INFO     | fitting pss+swap vs Time
[2024-04-30 11:55:48] 2024-04-30 15:55:32,294 | INFO     | current chi2=16.667391210981297 (change=5.229804422367 %)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,294 | INFO     | right removable region: 276
[2024-04-30 11:55:48] 2024-04-30 15:55:32,297 | INFO     | current chi2=13.284167012548913 (change=24.46669728159092 %)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,297 | INFO     | left removable region: 10
[2024-04-30 11:55:48] 2024-04-30 15:55:32,299 | INFO     | current memory leak: 65.66 B/s (using 266 data points, chi2=10.41)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | ..............................
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . Timing measurements:
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . get job = 0 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . initial setup = 3 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . payload setup = 47 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . stage-in = 0 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . payload execution = 17212 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . stage-out = 2 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | . log creation = 0 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,300 | INFO     | ..............................
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | 
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | job summary report
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | --------------------------------------------------
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | PanDA job id: 6187030741
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | task id: 38204359
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | errors: (none)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | pilot state: finished 
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | transexitcode: 0
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | exeerrorcode: 0
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | exeerrordiag: 
[2024-04-30 11:55:48] 2024-04-30 15:55:32,484 | INFO     | exitcode: 0
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | exitmsg: OK
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | cpuconsumptiontime: 40930 s
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | nevents: 400
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | neventsw: 0
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | pid: 6359
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | pgrp: 6359
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | corecount: 8
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | event service: False
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | sizes: {0: 2374168, 1: 2375704, 2: 2375732, 13: 2375732, 23: 2375788, 29: 2376022, 34: 2376178, 17264: 2407788, 17268: 2416804, 17291: 2416918}
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | --------------------------------------------------
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | 
[2024-04-30 11:55:48] 2024-04-30 15:55:32,485 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | job 6187030741 has completed (purged errors)
[2024-04-30 11:55:48] 2024-04-30 15:55:32,522 | INFO     | overall cleanup function is called
[2024-04-30 11:55:48] 2024-04-30 15:55:33,530 | INFO     | --- collectZombieJob: --- 10, [6359]
[2024-04-30 11:55:48] 2024-04-30 15:55:33,531 | INFO     | zombie collector waiting for pid 6359
[2024-04-30 11:55:48] 2024-04-30 15:55:33,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-30 11:55:48] 2024-04-30 15:55:34,536 | INFO     | collected zombie processes
[2024-04-30 11:55:48] 2024-04-30 15:55:34,537 | INFO     | will now attempt to kill all subprocesses of pid=6359
[2024-04-30 11:55:48] 2024-04-30 15:55:34,720 | INFO     | process IDs to be killed: [6359] (in reverse order)
[2024-04-30 11:55:48] 2024-04-30 15:55:34,901 | WARNING  | found no corresponding commands to process id(s)
[2024-04-30 11:55:48] 2024-04-30 15:55:34,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-30 11:55:48] 2024-04-30 15:55:34,916 | INFO     | did not find any defunct processes belonging to 6359
[2024-04-30 11:55:48] 2024-04-30 15:55:34,931 | INFO     | did not find any defunct processes belonging to 6359
[2024-04-30 11:55:48] 2024-04-30 15:55:34,931 | INFO     | ready for new job
[2024-04-30 11:55:48] 2024-04-30 15:55:34,932 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-30 11:55:48] 2024-04-30 15:55:34,933 | INFO     | *************************************
[2024-04-30 11:55:48] 2024-04-30 15:55:34,934 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-30 11:55:48] 2024-04-30 15:55:34,934 | INFO     | *************************************
[2024-04-30 11:55:48] 2024-04-30 15:55:34,934 | INFO     | 
[2024-04-30 11:55:48] 2024-04-30 15:55:34,939 | INFO     | architecture information:
[2024-04-30 11:55:48] 2024-04-30 15:55:34,939 | INFO     | executing command: cat /etc/os-release
[2024-04-30 11:55:48] 2024-04-30 15:55:34,970 | INFO     | cat /etc/os-release:
[2024-04-30 11:55:48] NAME="CentOS Linux"
[2024-04-30 11:55:48] VERSION="7 (Core)"
[2024-04-30 11:55:48] ID="centos"
[2024-04-30 11:55:48] ID_LIKE="rhel fedora"
[2024-04-30 11:55:48] VERSION_ID="7"
[2024-04-30 11:55:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-30 11:55:48] ANSI_COLOR="0;31"
[2024-04-30 11:55:48] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-30 11:55:48] HOME_URL="https://www.centos.org/"
[2024-04-30 11:55:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-30 11:55:48] 
[2024-04-30 11:55:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-30 11:55:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-30 11:55:48] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-30 11:55:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-30 11:55:48] 
[2024-04-30 11:55:48] 2024-04-30 15:55:34,970 | INFO     | *************************************
[2024-04-30 11:55:48] 2024-04-30 15:55:35,473 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2024-04-30 11:55:48] 2024-04-30 15:55:35,559 | INFO     | sufficient remaining disk space (99000254464 B)
[2024-04-30 11:55:48] 2024-04-30 15:55:35,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-30 11:55:48] 2024-04-30 15:55:35,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-30 11:55:48] 2024-04-30 15:55:35,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-30 11:55:48] 2024-04-30 15:55:35,613 | INFO     | found 0 job(s) in 20 queues
[2024-04-30 11:55:48] 2024-04-30 15:55:35,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-30 11:55:48] 2024-04-30 15:55:35,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-30 11:55:48] 2024-04-30 15:55:35,990 | INFO     | all data control threads have been joined
[2024-04-30 11:55:48] 2024-04-30 15:55:36,162 | INFO     | all payload control threads have been joined
[2024-04-30 11:55:48] 2024-04-30 15:55:36,227 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-30 11:55:48] 2024-04-30 15:55:36,228 | INFO     | aborting loop
[2024-04-30 11:55:48] 2024-04-30 15:55:36,566 | INFO     | [job] retrieve thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:36,869 | INFO     | [job] create_data_payload thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:36,996 | INFO     | [data] control thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,158 | INFO     | [payload] validate_pre thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,167 | INFO     | all job control threads have been joined
[2024-04-30 11:55:48] 2024-04-30 15:55:37,168 | INFO     | [payload] control thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,181 | INFO     | [data] copytool_in thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,233 | INFO     | [job] job monitor thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,343 | INFO     | [payload] failed_post thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,407 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-30 11:55:48] 2024-04-30 15:55:37,420 | INFO     | [payload] validate_post thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,567 | INFO     | [data] copytool_out thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,658 | INFO     | [job] validate thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,673 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:37,886 | INFO     | [payload] execute_payloads thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:38,173 | INFO     | [job] control thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:38,413 | INFO     | [job] queue monitor thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:38,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-30 11:55:48] 2024-04-30 15:55:42,509 | INFO     | [data] queue_monitor thread has finished
[2024-04-30 11:55:48] 2024-04-30 15:55:43,009 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140124033226560)>', '<ExcThread(monitor, started 140123601610496)>']
[2024-04-30 11:55:48] 2024-04-30 15:55:43,659 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-30 11:55:48] 2024-04-30 15:55:43,660 | INFO     | [monitor] control thread has ended
[2024-04-30 11:55:48] 2024-04-30 15:55:48,035 | INFO     | all workflow threads have been joined
[2024-04-30 11:55:48] 2024-04-30 15:55:48,036 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-30 11:55:48] 2024-04-30 15:55:48,036 | INFO     | traces error code: 0
[2024-04-30 11:55:48] 2024-04-30 15:55:48,036 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-30 11:55:48] 2024-04-30 15:55:48,344 [wrapper] ==== pilot stdout END ====
[2024-04-30 11:55:48] 2024-04-30 15:55:48,353 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-30 11:55:48] 2024-04-30 15:55:48,359 [wrapper] pilotpid: 261656
[2024-04-30 11:55:48] 2024-04-30 15:55:48,362 [wrapper] Pilot exit status: 0
[2024-04-30 11:55:48] 2024-04-30 15:55:48,435 [wrapper] pandaids: 6187030741
[2024-04-30 11:55:48] 2024-04-30 15:55:48,511 [wrapper] cleanup: SIGTERM to supervisor_pilot 168615 261657
[2024-04-30 11:55:48] 2024-04-30 15:55:48,513 [wrapper] Test setup, not cleaning
[2024-04-30 11:55:48] 2024-04-30 15:55:48,515 [wrapper] ==== wrapper stdout END ====
[2024-04-30 11:55:48] 2024-04-30 15:55:48,521 [wrapper] ==== wrapper stderr END ====
[2024-04-30 11:55:48] 2024-04-30 15:55:48,526 [wrapper] apfmon messages muted
[2024-04-30 11:55:48]  *** Error codes and diagnostics ***
[2024-04-30 11:55:48]     "exeErrorCode": 0,
[2024-04-30 11:55:48]     "exeErrorDiag": "",
[2024-04-30 11:55:48]     "pilotErrorCode": 0,
[2024-04-30 11:55:48]     "pilotErrorDiag": "",
[2024-04-30 11:55:48]  *** Listing of results directory ***
[2024-04-30 11:55:48] total 704964
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas    462745 Apr 25 19:38 pilot3.tar.gz
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas      6173 Apr 25 19:54 queuedata.json
[2024-04-30 11:55:48] -rwx------ 1 boincer umatlas     32211 Apr 25 19:54 runpilot2-wrapper.sh
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas       100 Apr 30 07:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-30 11:55:48] -rwxr-xr-x 1 boincer umatlas      7986 Apr 30 07:04 run_atlas
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas       105 Apr 30 07:04 job.xml
[2024-04-30 11:55:48] -rw-r--r-- 2 boincer umatlas 522883860 Apr 30 07:04 EVNT.38204357._000101.pool.root.1
[2024-04-30 11:55:48] drwxrwx--x 2 boincer umatlas      4096 Apr 30 07:04 shared
[2024-04-30 11:55:48] -rw-r--r-- 2 boincer umatlas    474797 Apr 30 07:04 input.tar.gz
[2024-04-30 11:55:48] -rw-r--r-- 2 boincer umatlas     17537 Apr 30 07:04 start_atlas.sh
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas         0 Apr 30 07:04 boinc_lockfile
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas      2622 Apr 30 07:04 pandaJob.out
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas       467 Apr 30 07:04 setup.sh.local
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas   1005148 Apr 30 07:06 agis_schedconf.cvmfs.json
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas   1315265 Apr 30 07:06 cric_ddmendpoints.json
[2024-04-30 11:55:48] drwx------ 4 boincer umatlas      4096 Apr 30 07:06 pilot3
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas 191957475 Apr 30 11:54 HITS.38204359._006020.pool.root.1
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas       532 Apr 30 11:54 boinc_task_state.xml
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas        95 Apr 30 11:54 pilot_heartbeat.json
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas      6386 Apr 30 11:54 init_data.xml
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas      1060 Apr 30 11:55 memory_monitor_summary.json
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas         0 Apr 30 11:55 agis_ddmendpoints.agis.ALL.json
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas    405299 Apr 30 11:55 log.38204359._006020.job.log.tgz.1
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas      8192 Apr 30 11:55 boinc_mmap_file
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas      7747 Apr 30 11:55 heartbeat.json
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas        28 Apr 30 11:55 wrapper_checkpoint.txt
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas      4211 Apr 30 11:55 pilotlog.txt
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas   1366837 Apr 30 11:55 log.38204359._006020.job.log.1
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas       357 Apr 30 11:55 output.list
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas       620 Apr 30 11:55 runtime_log
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas   1792000 Apr 30 11:55 result.tar.gz
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas     11415 Apr 30 11:55 runtime_log.err
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas       650 Apr 30 11:55 qQ7MDmZ6NK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmqFPKDmTr3vDm.diag
[2024-04-30 11:55:48] -rw-r--r-- 1 boincer umatlas     21849 Apr 30 11:55 stderr.txt
[2024-04-30 11:55:48] HITS file was successfully produced:
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas 191957475 Apr 30 11:54 shared/HITS.pool.root.1
[2024-04-30 11:55:48]  *** Contents of shared directory: ***
[2024-04-30 11:55:48] total 700336
[2024-04-30 11:55:48] -rw-r--r-- 2 boincer umatlas 522883860 Apr 30 07:04 ATLAS.root_0
[2024-04-30 11:55:48] -rw-r--r-- 2 boincer umatlas    474797 Apr 30 07:04 input.tar.gz
[2024-04-30 11:55:48] -rw-r--r-- 2 boincer umatlas     17537 Apr 30 07:04 start_atlas.sh
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas 191957475 Apr 30 11:54 HITS.pool.root.1
[2024-04-30 11:55:48] -rw------- 1 boincer umatlas   1792000 Apr 30 11:55 result.tar.gz
11:55:50 (219951): run_atlas exited; CPU time 40603.295294
11:55:50 (219951): called boinc_finish(0)

</stderr_txt>
]]>

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