| Name | ArkLDmg5JK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmQuOKDmspj7Xn_0 |
| Workunit | 222441728 |
| Created | 25 Apr 2024, 19:37:46 UTC |
| Sent | 25 Apr 2024, 22:48:19 UTC |
| Report deadline | 3 May 2024, 22:48:19 UTC |
| Received | 26 Apr 2024, 0:37:47 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10804767 |
| Run time | 1 hours 41 min 7 sec |
| CPU time | 4 hours 14 min 42 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 41.98 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.49 GB |
| Peak swap size | 3.11 GB |
| Peak disk usage | 1.03 GB |
Stderr output
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 18:49:43 (81389): wrapper (7.7.26015): starting 18:49:43 (81389): wrapper: running run_atlas (--nthreads 8) [2024-04-25 18:49:43] Arguments: --nthreads 8 [2024-04-25 18:49:43] Threads: 8 [2024-04-25 18:49:43] Checking for CVMFS [2024-04-25 18:49:43] Probing /cvmfs/atlas.cern.ch... OK [2024-04-25 18:49:44] Probing /cvmfs/atlas-condb.cern.ch... OK [2024-04-25 18:49:44] Running cvmfs_config stat atlas.cern.ch [2024-04-25 18:49:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE [2024-04-25 18:49:45] 2.11.2.0 81964 344 141436 132042 3 471 12480720 18432001 23454 130560 0 4264292 99.579 7251189 82286 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1 [2024-04-25 18:49:45] CVMFS is ok [2024-04-25 18:49:45] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-04-25 18:49:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-04-25 18:49:45] Further information can be found at the LHC@home message board. [2024-04-25 18:49:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-04-25 18:49:45] Checking for apptainer binary... [2024-04-25 18:49:45] Using apptainer found in PATH at /usr/bin/apptainer [2024-04-25 18:49:45] Running /usr/bin/apptainer --version [2024-04-25 18:49:45] apptainer version 1.3.0-1.el7 [2024-04-25 18:49:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-04-25 18:50:12] c7-4-30.aglt2.org [2024-04-25 18:50:12] apptainer works [2024-04-25 18:50:12] Set ATHENA_PROC_NUMBER=8 [2024-04-25 18:50:12] Set ATHENA_CORE_NUMBER=8 [2024-04-25 18:50:12] Starting ATLAS job with PandaID=6186855888 [2024-04-25 18:50:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-04-25 20:30:47] *** The last 200 lines of the pilot log: *** [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/common.py", line 2056, in remove_redundant_files [2024-04-25 20:30:47] list_work_dir(workdir) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/user/atlas/common.py", line 2003, in list_work_dir [2024-04-25 20:30:47] _, stdout, stderr = execute(cmd) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 94, in execute [2024-04-25 20:30:47] process = subprocess.Popen(exe, [2024-04-25 20:30:47] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-04-25 20:30:47] self._execute_child(args, executable, preexec_fn, close_fds, [2024-04-25 20:30:47] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-04-25 20:30:47] raise child_exception_type(errno_num, err_msg, err_filename) [2024-04-25 20:30:47] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-04-25 20:30:47] [2024-04-25 20:30:47] None [2024-04-25 20:30:47] exception has been put in bucket queue belonging to thread 'copytool_out' [2024-04-25 20:30:47] setting graceful stop in 10 s since there is no point in continuing [2024-04-25 20:30:47] 2024-04-26 00:28:04,070 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-04-25 20:30:47] 2024-04-26 00:28:06,016 | INFO | monitor loop #433: job 0:6186855888 is in state 'failed' [2024-04-25 20:30:47] 2024-04-26 00:28:06,017 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-04-25 20:30:47] 2024-04-26 00:28:08,520 | INFO | monitor loop #434: job 0:6186855888 is in state 'failed' [2024-04-25 20:30:47] 2024-04-26 00:28:08,520 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-04-25 20:30:47] 2024-04-26 00:28:11,023 | INFO | monitor loop #435: job 0:6186855888 is in state 'failed' [2024-04-25 20:30:47] 2024-04-26 00:28:11,023 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-04-25 20:30:47] 2024-04-26 00:28:13,526 | INFO | monitor loop #436: job 0:6186855888 is in state 'failed' [2024-04-25 20:30:47] 2024-04-26 00:28:13,526 | INFO | will abort job monitoring soon since job state=failed (job is still in queue) [2024-04-25 20:30:47] 2024-04-26 00:28:13,662 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration [2024-04-25 20:30:47] 2024-04-26 00:28:13,662 | WARNING | job:job_monitor:received graceful stop - abort after this iteration [2024-04-25 20:30:47] 2024-04-26 00:28:13,663 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration [2024-04-25 20:30:47] 2024-04-26 00:28:13,663 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s [2024-04-25 20:30:47] 2024-04-26 00:28:13,663 | INFO | will abort loop [2024-04-25 20:30:47] 2024-04-26 00:28:13,836 | INFO | all data control threads have been joined [2024-04-25 20:30:47] 2024-04-26 00:28:14,276 | INFO | all payload control threads have been joined [2024-04-25 20:30:47] 2024-04-26 00:28:14,536 | INFO | found 1 job(s) in 20 queues [2024-04-25 20:30:47] 2024-04-26 00:28:14,537 | INFO | aborting job 6186855888 [2024-04-25 20:30:47] 2024-04-26 00:28:14,612 | WARNING | pilot monitor received instruction that args.graceful_stop has been set [2024-04-25 20:30:47] 2024-04-26 00:28:14,613 | WARNING | will wait for a maximum of 300 s for threads to finish [2024-04-25 20:30:47] 2024-04-26 00:28:14,668 | INFO | [job] job monitor thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:14,842 | INFO | [data] control thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:14,863 | INFO | [job] create_data_payload thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:14,934 | INFO | [payload] validate_pre thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:15,049 | INFO | [job] validate thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:15,111 | INFO | [data] copytool_in thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:15,168 | INFO | all job control threads have been joined [2024-04-25 20:30:47] 2024-04-26 00:28:15,240 | INFO | [payload] validate_post thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:15,282 | INFO | [payload] control thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:15,558 | INFO | [job] retrieve thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:15,584 | INFO | [payload] failed_post thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:15,744 | INFO | [payload] run_realtimelog thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:16,173 | INFO | [job] control thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:17,669 | INFO | [data] queue_monitor thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:19,353 | INFO | [payload] execute_payloads thread has finished [2024-04-25 20:30:47] 2024-04-26 00:28:34,764 | INFO | job 6186855888 has state=failed [2024-04-25 20:30:47] 2024-04-26 00:28:34,765 | INFO | preparing for final server update for job 6186855888 in state='failed' [2024-04-25 20:30:47] 2024-04-26 00:28:35,735 | WARNING | job_aborted has been set - aborting pilot monitoring [2024-04-25 20:30:47] 2024-04-26 00:28:35,735 | INFO | [monitor] control thread has ended [2024-04-25 20:30:47] 2024-04-26 00:28:35,991 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:38,001 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:40,013 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:42,026 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:44,038 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:46,050 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:48,061 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:50,072 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:52,083 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:54,094 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:56,106 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:28:58,117 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:00,130 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:02,140 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:04,150 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:06,160 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:08,170 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:10,182 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:12,194 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:14,202 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:16,212 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:18,219 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:20,230 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:22,241 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:24,251 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:26,261 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:28,272 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:30,282 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:32,291 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:34,301 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:36,312 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:38,323 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:40,335 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:42,346 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:44,356 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:46,367 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:48,377 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:50,387 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:52,397 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:54,407 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:56,417 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:29:58,427 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:00,439 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:02,450 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:04,458 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:06,468 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:08,478 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:10,488 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:12,498 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:14,509 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:16,519 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:18,529 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:20,540 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:22,550 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:24,561 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:26,571 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:28,582 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:29,843 | INFO | proceeding with final server update [2024-04-25 20:30:47] 2024-04-26 00:30:29,844 | INFO | this job has now completed (state=failed) [2024-04-25 20:30:47] 2024-04-26 00:30:29,844 | INFO | pilot will not update the server (heartbeat message will be written to file) [2024-04-25 20:30:47] 2024-04-26 00:30:29,844 | INFO | job 6186855888 has failed - writing final server update [2024-04-25 20:30:47] 2024-04-26 00:30:29,844 | WARNING | making sure that job.state is set to failed since a pilot error code is set [2024-04-25 20:30:47] 2024-04-26 00:30:29,844 | INFO | payload/TRF did not report the number of read events [2024-04-25 20:30:47] 2024-04-26 00:30:29,853 | INFO | executing command: lscpu [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 450, in run [2024-04-25 20:30:47] self.target(**self.kwargs) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2529, in queue_monitor [2024-04-25 20:30:47] update_server(job, args) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2578, in update_server [2024-04-25 20:30:47] send_state(job, args, job.state, metadata=metadata) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 420, in send_state [2024-04-25 20:30:47] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 744, in get_data_structure [2024-04-25 20:30:47] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-04-25 20:30:47] ec, stdout = lscpu() [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-04-25 20:30:47] ec, stdout, _ = execute(cmd) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 94, in execute [2024-04-25 20:30:47] process = subprocess.Popen(exe, [2024-04-25 20:30:47] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-04-25 20:30:47] self._execute_child(args, executable, preexec_fn, close_fds, [2024-04-25 20:30:47] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-04-25 20:30:47] raise child_exception_type(errno_num, err_msg, err_filename) [2024-04-25 20:30:47] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f7f1160cd80>) [2024-04-25 20:30:47] Traceback (most recent call last): [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 450, in run [2024-04-25 20:30:47] self.target(**self.kwargs) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2529, in queue_monitor [2024-04-25 20:30:47] update_server(job, args) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2578, in update_server [2024-04-25 20:30:47] send_state(job, args, job.state, metadata=metadata) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 420, in send_state [2024-04-25 20:30:47] data = get_data_structure(job, state, args, xml=xml, metadata=metadata) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 744, in get_data_structure [2024-04-25 20:30:47] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores [2024-04-25 20:30:47] ec, stdout = lscpu() [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 333, in lscpu [2024-04-25 20:30:47] ec, stdout, _ = execute(cmd) [2024-04-25 20:30:47] File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 94, in execute [2024-04-25 20:30:47] process = subprocess.Popen(exe, [2024-04-25 20:30:47] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__ [2024-04-25 20:30:47] self._execute_child(args, executable, preexec_fn, close_fds, [2024-04-25 20:30:47] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child [2024-04-25 20:30:47] raise child_exception_type(errno_num, err_msg, err_filename) [2024-04-25 20:30:47] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash' [2024-04-25 20:30:47] [2024-04-25 20:30:47] None [2024-04-25 20:30:47] exception has been put in bucket queue belonging to thread 'queue_monitor' [2024-04-25 20:30:47] setting graceful stop in 10 s since there is no point in continuing [2024-04-25 20:30:47] 2024-04-26 00:30:30,595 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:32,607 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:34,617 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:36,627 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:38,637 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140183870711616)>', '<ExcThread(queue_monitor, started 140183345284864)>'] [2024-04-25 20:30:47] 2024-04-26 00:30:40,648 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140183870711616)>']) [2024-04-25 20:30:47] 2024-04-26 00:30:45,674 | INFO | all workflow threads have been joined [2024-04-25 20:30:47] 2024-04-26 00:30:45,674 | INFO | end of generic workflow (traces error code: 0) [2024-04-25 20:30:47] 2024-04-26 00:30:45,675 | INFO | traces error code: 0 [2024-04-25 20:30:47] 2024-04-26 00:30:45,675 | INFO | pilot has finished (exit code=0, shell exit code=0) [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] ==== pilot stdout END ==== [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] ==== wrapper stdout RESUME ==== [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] pilotpid: 21582 [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] Pilot exit status: 0 [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 949: xargs: command not found [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] pandaids: [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] No supervise_pilot CHILD process found [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] Test setup, not cleaning [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] ==== wrapper stdout END ==== [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] ==== wrapper stderr END ==== [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected [2024-04-25 20:30:47] apfmon messages muted [2024-04-25 20:30:47] *** Error codes and diagnostics *** [2024-04-25 20:30:47] *** Listing of results directory *** [2024-04-25 20:30:47] total 505612 [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 462745 Apr 25 15:36 pilot3.tar.gz [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 6173 Apr 25 15:36 queuedata.json [2024-04-25 20:30:47] -rwx------ 1 boincer umatlas 32211 Apr 25 15:37 runpilot2-wrapper.sh [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 100 Apr 25 18:49 wrapper_26015_x86_64-pc-linux-gnu [2024-04-25 20:30:47] -rwxr-xr-x 1 boincer umatlas 7986 Apr 25 18:49 run_atlas [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 105 Apr 25 18:49 job.xml [2024-04-25 20:30:47] -rw-r--r-- 2 boincer umatlas 513248875 Apr 25 18:49 EVNT.38207233._000032.pool.root.1 [2024-04-25 20:30:47] -rw-r--r-- 2 boincer umatlas 17537 Apr 25 18:49 start_atlas.sh [2024-04-25 20:30:47] drwxrwx--x 2 boincer umatlas 4096 Apr 25 18:49 shared [2024-04-25 20:30:47] -rw-r--r-- 2 boincer umatlas 474803 Apr 25 18:49 input.tar.gz [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 0 Apr 25 18:49 boinc_lockfile [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 2674 Apr 25 18:50 pandaJob.out [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 424 Apr 25 18:50 setup.sh.local [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 993582 Apr 25 18:52 agis_schedconf.cvmfs.json [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 0 Apr 25 18:52 agis_ddmendpoints.agis.ALL.json [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 1315307 Apr 25 18:52 cric_ddmendpoints.json [2024-04-25 20:30:47] drwx------ 4 boincer umatlas 4096 Apr 25 18:52 pilot3 [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 870 Apr 25 19:54 heartbeat.json [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 95 Apr 25 20:27 pilot_heartbeat.json [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 530 Apr 25 20:27 boinc_task_state.xml [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 1064 Apr 25 20:28 memory_monitor_summary.json [2024-04-25 20:30:47] drwxrwx--- 2 boincer umatlas 4096 Apr 25 20:28 PanDA_Pilot-6186855888 [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 6302 Apr 25 20:29 init_data.xml [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 8192 Apr 25 20:30 boinc_mmap_file [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 27 Apr 25 20:30 wrapper_checkpoint.txt [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 512644 Apr 25 20:30 pilotlog.txt [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 534977 Apr 25 20:30 log.38207235._001780.job.log.1 [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 428 Apr 25 20:30 runtime_log [2024-04-25 20:30:47] -rw------- 1 boincer umatlas 626 Apr 25 20:30 ArkLDmg5JK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmQuOKDmspj7Xn.diag [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 11283 Apr 25 20:30 runtime_log.err [2024-04-25 20:30:47] -rw-r--r-- 1 boincer umatlas 28055 Apr 25 20:30 stderr.txt [2024-04-25 20:30:47] No HITS result produced [2024-04-25 20:30:47] *** Contents of shared directory: *** [2024-04-25 20:30:47] total 501704 [2024-04-25 20:30:47] -rw-r--r-- 2 boincer umatlas 513248875 Apr 25 18:49 ATLAS.root_0 [2024-04-25 20:30:47] -rw-r--r-- 2 boincer umatlas 17537 Apr 25 18:49 start_atlas.sh [2024-04-25 20:30:47] -rw-r--r-- 2 boincer umatlas 474803 Apr 25 18:49 input.tar.gz 20:30:49 (81389): run_atlas exited; CPU time 14894.699152 20:30:49 (81389): called boinc_finish(0) </stderr_txt> <message> upload failure: <file_xfer_error> <file_name>ArkLDmg5JK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmQuOKDmspj7Xn_0_r346387412_ATLAS_result</file_name> <error_code>-161 (not found)</error_code> </file_xfer_error> </message> ]]>
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