Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:29:16 (19400): wrapper (7.7.26015): starting
14:29:16 (19400): wrapper: running run_atlas (--nthreads 8)
[2024-04-25 14:29:16] Arguments: --nthreads 8
[2024-04-25 14:29:16] Threads: 8
[2024-04-25 14:29:16] Checking for CVMFS
[2024-04-25 14:29:17] Probing /cvmfs/atlas.cern.ch... OK
[2024-04-25 14:29:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-04-25 14:29:17] Running cvmfs_config stat atlas.cern.ch
[2024-04-25 14:29:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-04-25 14:29:18] 2.11.2.0 79234 24 62516 132036 3 255 16586176 18432001 3489 130560 0 311547 97.077 2417610 81908 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-04-25 14:29:18] CVMFS is ok
[2024-04-25 14:29:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-25 14:29:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-25 14:29:18] Further information can be found at the LHC@home message board.
[2024-04-25 14:29:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-25 14:29:18] Checking for apptainer binary...
[2024-04-25 14:29:18] Using apptainer found in PATH at /usr/bin/apptainer
[2024-04-25 14:29:18] Running /usr/bin/apptainer --version
[2024-04-25 14:29:18] apptainer version 1.3.0-1.el7
[2024-04-25 14:29:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-25 14:29:32] c-212-3.aglt2.org
[2024-04-25 14:29:32] apptainer works
[2024-04-25 14:29:32] Set ATHENA_PROC_NUMBER=8
[2024-04-25 14:29:32] Set ATHENA_CORE_NUMBER=8
[2024-04-25 14:29:32] Starting ATLAS job with PandaID=6186576102
[2024-04-25 14:29:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-25 15:12:01]  *** The last 200 lines of the pilot log: ***
[2024-04-25 15:12:01] setting graceful stop in 10 s since there is no point in continuing
[2024-04-25 15:12:01] 2024-04-25 19:09:39,124 | WARNING  | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 15:12:01] 2024-04-25 19:09:40,530 | WARNING  | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 15:12:01] 2024-04-25 19:09:40,531 | WARNING  | Traceback (most recent call last):
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-04-25 15:12:01]     cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/processes.py", line 571, in get_current_cpu_consumption_time
[2024-04-25 15:12:01]     _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 15:12:01]     process = subprocess.Popen(exe,
[2024-04-25 15:12:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 15:12:01]     self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 15:12:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 15:12:01]     raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 15:12:01] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 15:12:01] 
[2024-04-25 15:12:01] 2024-04-25 19:09:40,531 | WARNING  | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 15:12:01] 2024-04-25 19:09:40,531 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-25 15:12:01] 2024-04-25 19:09:40,531 | INFO     | job 6186576102 has state 'running' - writing heartbeat
[2024-04-25 15:12:01] 2024-04-25 19:09:40,532 | INFO     | payload/TRF did not report the number of read events
[2024-04-25 15:12:01] 2024-04-25 19:09:40,538 | INFO     | executing command: lscpu
[2024-04-25 15:12:01] 2024-04-25 19:09:40,547 | WARNING  | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 15:12:01] 2024-04-25 19:09:43,052 | INFO     | monitor loop #204: job 0:6186576102 is in state 'failed'
[2024-04-25 15:12:01] 2024-04-25 19:09:43,052 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-25 15:12:01] 2024-04-25 19:09:45,556 | INFO     | monitor loop #205: job 0:6186576102 is in state 'failed'
[2024-04-25 15:12:01] 2024-04-25 19:09:45,556 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-25 15:12:01] 2024-04-25 19:09:48,061 | INFO     | monitor loop #206: job 0:6186576102 is in state 'failed'
[2024-04-25 15:12:01] 2024-04-25 19:09:48,061 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-25 15:12:01] 2024-04-25 19:09:49,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-25 15:12:01] 2024-04-25 19:09:49,121 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-25 15:12:01] 2024-04-25 19:09:49,121 | INFO     | aborting loop
[2024-04-25 15:12:01] 2024-04-25 19:09:49,121 | INFO     | found 1 job(s) in 20 queues
[2024-04-25 15:12:01] 2024-04-25 19:09:49,122 | INFO     | aborting job 6186576102
[2024-04-25 15:12:01] 2024-04-25 19:09:49,195 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-25 15:12:01] 2024-04-25 19:09:49,195 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-25 15:12:01] 2024-04-25 19:09:49,195 | INFO     | job 6186576102 has state=failed
[2024-04-25 15:12:01] 2024-04-25 19:09:49,195 | INFO     | preparing for final server update for job 6186576102 in state='failed'
[2024-04-25 15:12:01] 2024-04-25 19:09:49,901 | INFO     | all job control threads have been joined
[2024-04-25 15:12:01] 2024-04-25 19:09:49,928 | INFO     | all data control threads have been joined
[2024-04-25 15:12:01] 2024-04-25 19:09:50,127 | INFO     | [job] job monitor thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:50,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-25 15:12:01] 2024-04-25 19:09:50,201 | INFO     | [monitor] control thread has ended
[2024-04-25 15:12:01] 2024-04-25 19:09:50,298 | INFO     | [job] create_data_payload thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:50,486 | INFO     | all payload control threads have been joined
[2024-04-25 15:12:01] 2024-04-25 19:09:50,549 | INFO     | [payload] validate_pre thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:50,657 | INFO     | [payload] validate_post thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:50,805 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:50,907 | INFO     | [job] control thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:50,934 | INFO     | [data] control thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:51,164 | INFO     | [data] copytool_in thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:51,306 | INFO     | [payload] failed_post thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:51,492 | INFO     | [payload] control thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:51,584 | INFO     | [job] validate thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:51,622 | INFO     | [job] retrieve thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:52,206 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-25 15:12:01] 2024-04-25 19:09:54,694 | INFO     | [payload] execute_payloads thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:56,215 | INFO     | [data] queue_monitor thread has finished
[2024-04-25 15:12:01] 2024-04-25 19:09:56,373 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:09:58,383 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:00,388 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:02,399 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:04,409 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:06,420 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:08,431 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:10,442 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:12,453 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:14,464 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:16,474 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:18,483 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:20,493 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:22,503 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:24,514 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:26,524 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:28,535 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:30,546 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:32,556 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:34,567 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:36,578 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:38,589 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:40,601 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:42,613 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:44,623 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:46,634 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:48,648 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:50,658 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:52,669 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:54,679 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:56,689 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:10:58,702 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:00,712 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:02,723 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:04,734 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:06,746 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:08,757 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:10,767 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:12,778 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:14,788 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:16,799 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:18,811 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:20,821 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:22,832 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:24,844 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:26,855 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:28,866 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:30,877 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:32,889 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:34,899 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:36,910 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:38,920 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:40,931 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:42,941 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:44,296 | INFO     | proceeding with final server update
[2024-04-25 15:12:01] 2024-04-25 19:11:44,297 | INFO     | this job has now completed (state=failed)
[2024-04-25 15:12:01] 2024-04-25 19:11:44,297 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-25 15:12:01] 2024-04-25 19:11:44,297 | INFO     | job 6186576102 has failed - writing final server update
[2024-04-25 15:12:01] 2024-04-25 19:11:44,297 | WARNING  | making sure that job.state is set to failed since a pilot error code is set
[2024-04-25 15:12:01] 2024-04-25 19:11:44,297 | INFO     | payload/TRF did not report the number of read events
[2024-04-25 15:12:01] 2024-04-25 19:11:44,302 | INFO     | executing command: lscpu
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-25 15:12:01]     self.target(**self.kwargs)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-25 15:12:01]     update_server(job, args)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-25 15:12:01]     send_state(job, args, job.state, metadata=metadata)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-25 15:12:01]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-25 15:12:01]     cpumodel = get_cpu_cores(cpumodel)  # add the CPU cores if not present
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-25 15:12:01]     ec, stdout = lscpu()
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-25 15:12:01]     ec, stdout, _ = execute(cmd)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 15:12:01]     process = subprocess.Popen(exe,
[2024-04-25 15:12:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 15:12:01]     self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 15:12:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 15:12:01]     raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 15:12:01] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f3719a86880>)
[2024-04-25 15:12:01] Traceback (most recent call last):
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-25 15:12:01]     self.target(**self.kwargs)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-25 15:12:01]     update_server(job, args)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-25 15:12:01]     send_state(job, args, job.state, metadata=metadata)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-25 15:12:01]     data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-25 15:12:01]     cpumodel = get_cpu_cores(cpumodel)  # add the CPU cores if not present
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-25 15:12:01]     ec, stdout = lscpu()
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-25 15:12:01]     ec, stdout, _ = execute(cmd)
[2024-04-25 15:12:01]   File "/tmp/boinchome/slots/3/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 15:12:01]     process = subprocess.Popen(exe,
[2024-04-25 15:12:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 15:12:01]     self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 15:12:01]   File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 15:12:01]     raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 15:12:01] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 15:12:01] 
[2024-04-25 15:12:01] None
[2024-04-25 15:12:01] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-04-25 15:12:01] setting graceful stop in 10 s since there is no point in continuing
[2024-04-25 15:12:01] 2024-04-25 19:11:44,952 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:46,962 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:48,972 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:50,983 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:52,995 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 139874778441536)>', '<ExcThread(queue_monitor, started 139874518685440)>']
[2024-04-25 15:12:01] 2024-04-25 19:11:55,003 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139874778441536)>'])
[2024-04-25 15:12:01] 2024-04-25 19:12:00,029 | INFO     | all workflow threads have been joined
[2024-04-25 15:12:01] 2024-04-25 19:12:00,029 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-25 15:12:01] 2024-04-25 19:12:00,030 | INFO     | traces error code: 0
[2024-04-25 15:12:01] 2024-04-25 19:12:00,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  ==== pilot stdout END ====
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  ==== wrapper stdout RESUME ====
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  pilotpid: 61153
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  Pilot exit status: 0
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  pandaids: 
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  No supervise_pilot CHILD process found
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  Test setup, not cleaning
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  ==== wrapper stdout END ====
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  ==== wrapper stderr END ====
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 15:12:01]  apfmon messages muted
[2024-04-25 15:12:01]  *** Error codes and diagnostics ***
[2024-04-25 15:12:01]  *** Listing of results directory ***
[2024-04-25 15:12:01] total 508272
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas    462745 Apr 25 11:49 pilot3.tar.gz
[2024-04-25 15:12:01] -rwx------ 1 boincer umatlas     32211 Apr 25 12:11 runpilot2-wrapper.sh
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas      6173 Apr 25 12:11 queuedata.json
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas       100 Apr 25 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-25 15:12:01] -rwxr-xr-x 1 boincer umatlas      7986 Apr 25 14:29 run_atlas
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas       105 Apr 25 14:29 job.xml
[2024-04-25 15:12:01] -rw-r--r-- 2 boincer umatlas 516486424 Apr 25 14:29 EVNT.38207157._000107.pool.root.1
[2024-04-25 15:12:01] -rw-r--r-- 2 boincer umatlas     17537 Apr 25 14:29 start_atlas.sh
[2024-04-25 15:12:01] drwxrwx--x 2 boincer umatlas      4096 Apr 25 14:29 shared
[2024-04-25 15:12:01] -rw-r--r-- 2 boincer umatlas    474805 Apr 25 14:29 input.tar.gz
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas         0 Apr 25 14:29 boinc_lockfile
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas      2651 Apr 25 14:29 pandaJob.out
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas       467 Apr 25 14:29 setup.sh.local
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas    993590 Apr 25 14:31 agis_schedconf.cvmfs.json
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas         0 Apr 25 14:31 agis_ddmendpoints.agis.ALL.json
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas   1315307 Apr 25 14:31 cric_ddmendpoints.json
[2024-04-25 15:12:01] drwx------ 4 boincer umatlas      4096 Apr 25 14:31 pilot3
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas       847 Apr 25 15:01 heartbeat.json
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas      6384 Apr 25 15:03 init_data.xml
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas        95 Apr 25 15:09 pilot_heartbeat.json
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas       529 Apr 25 15:09 boinc_task_state.xml
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas      1021 Apr 25 15:09 memory_monitor_summary.json
[2024-04-25 15:12:01] drwxrwx--- 2 boincer umatlas      4096 Apr 25 15:09 PanDA_Pilot-6186576102
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas      8192 Apr 25 15:11 boinc_mmap_file
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas        25 Apr 25 15:11 wrapper_checkpoint.txt
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas    255035 Apr 25 15:12 pilotlog.txt
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas    277135 Apr 25 15:12 log.38207159._002779.job.log.1
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas       428 Apr 25 15:12 runtime_log
[2024-04-25 15:12:01] -rw------- 1 boincer umatlas       615 Apr 25 15:12 EwrKDmlrGK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmUcOKDmIrTEUo.diag
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas     11688 Apr 25 15:12 runtime_log.err
[2024-04-25 15:12:01] -rw-r--r-- 1 boincer umatlas     28058 Apr 25 15:12 stderr.txt
[2024-04-25 15:12:01] No HITS result produced
[2024-04-25 15:12:01]  *** Contents of shared directory: ***
[2024-04-25 15:12:01] total 504868
[2024-04-25 15:12:01] -rw-r--r-- 2 boincer umatlas 516486424 Apr 25 14:29 ATLAS.root_0
[2024-04-25 15:12:01] -rw-r--r-- 2 boincer umatlas     17537 Apr 25 14:29 start_atlas.sh
[2024-04-25 15:12:01] -rw-r--r-- 2 boincer umatlas    474805 Apr 25 14:29 input.tar.gz
15:12:02 (19400): run_atlas exited; CPU time 169.431387
15:12:02 (19400): called boinc_finish(0)

</stderr_txt>
<message>
upload failure: <file_xfer_error>
  <file_name>EwrKDmlrGK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmUcOKDmIrTEUo_0_r25105935_ATLAS_result</file_name>
  <error_code>-161 (not found)</error_code>
</file_xfer_error>

</message>
]]>

©2024 CERN