| Name | pKKMDmLjEK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmWTOKDmgquSKn_0 |
| Workunit | 222433766 |
| Created | 25 Apr 2024, 13:54:20 UTC |
| Sent | 25 Apr 2024, 16:28:11 UTC |
| Report deadline | 3 May 2024, 16:28:11 UTC |
| Received | 25 Apr 2024, 17:12:53 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10804955 |
| Run time | 41 min 47 sec |
| CPU time | 1 min 18 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 39.03 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.14 GB |
| Peak swap size | 1.70 GB |
| Peak disk usage | 995.40 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:28:44 (27101): wrapper (7.7.26015): starting
12:28:44 (27101): wrapper: running run_atlas (--nthreads 8)
[2024-04-25 12:28:44] Arguments: --nthreads 8
[2024-04-25 12:28:44] Threads: 8
[2024-04-25 12:28:44] Checking for CVMFS
[2024-04-25 12:28:44] Probing /cvmfs/atlas.cern.ch... OK
[2024-04-25 12:28:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-04-25 12:28:44] Running cvmfs_config stat atlas.cern.ch
[2024-04-25 12:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-04-25 12:28:45] 2.11.2.0 9522 23 69268 132032 3 322 9608723 18432000 4830 130560 1 447180 98.990 660005 2842 http://cvmfs-stratum-one.ihep.ac.cn:8000/cvmfs/atlas.cern.ch http://10.10.128.19:3128 1
[2024-04-25 12:28:45] CVMFS is ok
[2024-04-25 12:28:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-25 12:28:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-25 12:28:45] Further information can be found at the LHC@home message board.
[2024-04-25 12:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-25 12:28:45] Checking for apptainer binary...
[2024-04-25 12:28:45] Using apptainer found in PATH at /usr/bin/apptainer
[2024-04-25 12:28:45] Running /usr/bin/apptainer --version
[2024-04-25 12:28:45] apptainer version 1.3.0-1.el7
[2024-04-25 12:28:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-25 12:28:46] c-212-14.aglt2.org
[2024-04-25 12:28:46] apptainer works
[2024-04-25 12:28:46] Set ATHENA_PROC_NUMBER=8
[2024-04-25 12:28:46] Set ATHENA_CORE_NUMBER=8
[2024-04-25 12:28:46] Starting ATLAS job with PandaID=6186465930
[2024-04-25 12:28:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-25 13:10:28] *** The last 200 lines of the pilot log: ***
[2024-04-25 13:10:28] None
[2024-04-25 13:10:28] exception has been put in bucket queue belonging to thread 'copytool_out'
[2024-04-25 13:10:28] setting graceful stop in 10 s since there is no point in continuing
[2024-04-25 13:10:28] 2024-04-25 17:08:06,759 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:10:28] 2024-04-25 17:08:10,738 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:10:28] 2024-04-25 17:08:10,739 | WARNING | Traceback (most recent call last):
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-04-25 13:10:28] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/processes.py", line 571, in get_current_cpu_consumption_time
[2024-04-25 13:10:28] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 13:10:28] process = subprocess.Popen(exe,
[2024-04-25 13:10:28] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 13:10:28] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 13:10:28] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 13:10:28] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 13:10:28] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:10:28]
[2024-04-25 13:10:28] 2024-04-25 17:08:10,739 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:10:28] 2024-04-25 17:08:10,739 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-04-25 13:10:28] 2024-04-25 17:08:10,739 | INFO | job 6186465930 has state 'running' - writing heartbeat
[2024-04-25 13:10:28] 2024-04-25 17:08:10,740 | INFO | payload/TRF did not report the number of read events
[2024-04-25 13:10:28] 2024-04-25 17:08:10,744 | INFO | executing command: lscpu
[2024-04-25 13:10:28] 2024-04-25 17:08:10,751 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:10:28] 2024-04-25 17:08:13,254 | INFO | monitor loop #187: job 0:6186465930 is in state 'failed'
[2024-04-25 13:10:28] 2024-04-25 17:08:13,255 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-25 13:10:28] 2024-04-25 17:08:15,758 | INFO | monitor loop #188: job 0:6186465930 is in state 'failed'
[2024-04-25 13:10:28] 2024-04-25 17:08:15,759 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-25 13:10:28] 2024-04-25 17:08:16,298 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-25 13:10:28] 2024-04-25 17:08:16,298 | INFO | found 1 job(s) in 20 queues
[2024-04-25 13:10:28] 2024-04-25 17:08:16,298 | INFO | aborting job 6186465930
[2024-04-25 13:10:28] 2024-04-25 17:08:16,307 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-25 13:10:28] 2024-04-25 17:08:16,308 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-25 13:10:28] 2024-04-25 17:08:16,308 | INFO | will abort loop
[2024-04-25 13:10:28] 2024-04-25 17:08:16,365 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-25 13:10:28] 2024-04-25 17:08:16,365 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-04-25 13:10:28] 2024-04-25 17:08:16,366 | INFO | job 6186465930 has state=failed
[2024-04-25 13:10:28] 2024-04-25 17:08:16,366 | INFO | preparing for final server update for job 6186465930 in state='failed'
[2024-04-25 13:10:28] 2024-04-25 17:08:16,474 | INFO | all job control threads have been joined
[2024-04-25 13:10:28] 2024-04-25 17:08:16,504 | INFO | all data control threads have been joined
[2024-04-25 13:10:28] 2024-04-25 17:08:17,265 | INFO | all payload control threads have been joined
[2024-04-25 13:10:28] 2024-04-25 17:08:17,312 | INFO | [job] job monitor thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,370 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-04-25 13:10:28] 2024-04-25 17:08:17,371 | INFO | [monitor] control thread has ended
[2024-04-25 13:10:28] 2024-04-25 17:08:17,425 | INFO | [payload] run_realtimelog thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,479 | INFO | [job] control thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,509 | INFO | [data] control thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,633 | INFO | [payload] validate_post thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,685 | INFO | [job] retrieve thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,765 | INFO | [job] validate thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,938 | INFO | [job] create_data_payload thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:17,959 | INFO | [data] copytool_in thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:18,049 | INFO | [payload] validate_pre thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:18,270 | INFO | [payload] control thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:18,473 | INFO | [payload] failed_post thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:20,312 | INFO | [data] queue_monitor thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:22,269 | INFO | [payload] execute_payloads thread has finished
[2024-04-25 13:10:28] 2024-04-25 17:08:23,296 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:25,303 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:27,314 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:29,324 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:31,336 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:33,347 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:35,352 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:37,363 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:39,374 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:41,385 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:43,395 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:45,406 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:47,417 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:49,427 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:51,437 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:53,448 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:55,458 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:57,469 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:08:59,480 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:01,491 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:03,502 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:05,512 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:07,525 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:09,535 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:11,546 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:13,556 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:15,567 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:17,578 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:19,589 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:21,600 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:23,612 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:25,624 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:27,636 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:29,646 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:31,657 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:33,668 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:35,678 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:37,689 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:39,701 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:41,712 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:43,724 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:45,735 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:47,746 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:49,757 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:51,768 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:53,778 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:55,791 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:57,802 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:09:59,813 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:01,824 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:03,835 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:05,846 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:07,857 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:09,868 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:11,429 | INFO | proceeding with final server update
[2024-04-25 13:10:28] 2024-04-25 17:10:11,430 | INFO | this job has now completed (state=failed)
[2024-04-25 13:10:28] 2024-04-25 17:10:11,430 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-04-25 13:10:28] 2024-04-25 17:10:11,430 | INFO | job 6186465930 has failed - writing final server update
[2024-04-25 13:10:28] 2024-04-25 17:10:11,430 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2024-04-25 13:10:28] 2024-04-25 17:10:11,430 | INFO | payload/TRF did not report the number of read events
[2024-04-25 13:10:28] 2024-04-25 17:10:11,433 | INFO | executing command: lscpu
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-25 13:10:28] self.target(**self.kwargs)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-25 13:10:28] update_server(job, args)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-25 13:10:28] send_state(job, args, job.state, metadata=metadata)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-25 13:10:28] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-25 13:10:28] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-25 13:10:28] ec, stdout = lscpu()
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-25 13:10:28] ec, stdout, _ = execute(cmd)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 13:10:28] process = subprocess.Popen(exe,
[2024-04-25 13:10:28] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 13:10:28] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 13:10:28] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 13:10:28] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 13:10:28] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7fdb58a1dbc0>)
[2024-04-25 13:10:28] Traceback (most recent call last):
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-25 13:10:28] self.target(**self.kwargs)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-25 13:10:28] update_server(job, args)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-25 13:10:28] send_state(job, args, job.state, metadata=metadata)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-25 13:10:28] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-25 13:10:28] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-25 13:10:28] ec, stdout = lscpu()
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-25 13:10:28] ec, stdout, _ = execute(cmd)
[2024-04-25 13:10:28] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 13:10:28] process = subprocess.Popen(exe,
[2024-04-25 13:10:28] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 13:10:28] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 13:10:28] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 13:10:28] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 13:10:28] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:10:28]
[2024-04-25 13:10:28] None
[2024-04-25 13:10:28] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-04-25 13:10:28] setting graceful stop in 10 s since there is no point in continuing
[2024-04-25 13:10:28] 2024-04-25 17:10:11,879 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:13,890 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:15,900 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:17,911 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:19,921 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140580208412480)>', '<ExcThread(queue_monitor, started 140579623126784)>']
[2024-04-25 13:10:28] 2024-04-25 17:10:21,932 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140580208412480)>'])
[2024-04-25 13:10:28] 2024-04-25 17:10:26,958 | INFO | all workflow threads have been joined
[2024-04-25 13:10:28] 2024-04-25 17:10:26,958 | INFO | end of generic workflow (traces error code: 0)
[2024-04-25 13:10:28] 2024-04-25 17:10:26,958 | INFO | traces error code: 0
[2024-04-25 13:10:28] 2024-04-25 17:10:26,959 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] ==== pilot stdout END ====
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] ==== wrapper stdout RESUME ====
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] pilotpid: 67418
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] Pilot exit status: 0
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] pandaids:
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] No supervise_pilot CHILD process found
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] Test setup, not cleaning
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] ==== wrapper stdout END ====
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] ==== wrapper stderr END ====
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:10:28] apfmon messages muted
[2024-04-25 13:10:28] *** Error codes and diagnostics ***
[2024-04-25 13:10:28] *** Listing of results directory ***
[2024-04-25 13:10:28] total 509760
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 462745 Apr 25 09:25 pilot3.tar.gz
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 6173 Apr 25 09:53 queuedata.json
[2024-04-25 13:10:28] -rwx------ 1 boincer umatlas 32211 Apr 25 09:54 runpilot2-wrapper.sh
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 100 Apr 25 12:28 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-25 13:10:28] -rwxr-xr-x 1 boincer umatlas 7986 Apr 25 12:28 run_atlas
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 105 Apr 25 12:28 job.xml
[2024-04-25 13:10:28] -rw-r--r-- 2 boincer umatlas 518000870 Apr 25 12:28 EVNT.38204261._000236.pool.root.1
[2024-04-25 13:10:28] -rw-r--r-- 2 boincer umatlas 17537 Apr 25 12:28 start_atlas.sh
[2024-04-25 13:10:28] drwxrwx--x 2 boincer umatlas 4096 Apr 25 12:28 shared
[2024-04-25 13:10:28] -rw-r--r-- 2 boincer umatlas 474803 Apr 25 12:28 input.tar.gz
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 0 Apr 25 12:28 boinc_lockfile
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 2650 Apr 25 12:28 pandaJob.out
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 467 Apr 25 12:28 setup.sh.local
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 993235 Apr 25 12:29 agis_schedconf.cvmfs.json
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 0 Apr 25 12:29 agis_ddmendpoints.agis.ALL.json
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 1315307 Apr 25 12:29 cric_ddmendpoints.json
[2024-04-25 13:10:28] drwx------ 4 boincer umatlas 4096 Apr 25 12:29 pilot3
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 848 Apr 25 12:59 heartbeat.json
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 6385 Apr 25 13:02 init_data.xml
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 527 Apr 25 13:07 boinc_task_state.xml
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 1056 Apr 25 13:08 memory_monitor_summary.json
[2024-04-25 13:10:28] drwxrwx--- 2 boincer umatlas 4096 Apr 25 13:08 PanDA_Pilot-6186465930
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 95 Apr 25 13:08 pilot_heartbeat.json
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 8192 Apr 25 13:10 boinc_mmap_file
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 24 Apr 25 13:10 wrapper_checkpoint.txt
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 256554 Apr 25 13:10 pilotlog.txt
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 278716 Apr 25 13:10 log.38204263._006422.job.log.1
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 428 Apr 25 13:10 runtime_log
[2024-04-25 13:10:28] -rw------- 1 boincer umatlas 616 Apr 25 13:10 pKKMDmLjEK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmWTOKDmgquSKn.diag
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 11690 Apr 25 13:10 runtime_log.err
[2024-04-25 13:10:28] -rw-r--r-- 1 boincer umatlas 27921 Apr 25 13:10 stderr.txt
[2024-04-25 13:10:28] No HITS result produced
[2024-04-25 13:10:28] *** Contents of shared directory: ***
[2024-04-25 13:10:28] total 506352
[2024-04-25 13:10:28] -rw-r--r-- 2 boincer umatlas 518000870 Apr 25 12:28 ATLAS.root_0
[2024-04-25 13:10:28] -rw-r--r-- 2 boincer umatlas 17537 Apr 25 12:28 start_atlas.sh
[2024-04-25 13:10:28] -rw-r--r-- 2 boincer umatlas 474803 Apr 25 12:28 input.tar.gz
13:10:30 (27101): run_atlas exited; CPU time 78.316337
13:10:30 (27101): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>pKKMDmLjEK5n9Rq4apoT9bVoABFKDmABFKDmtztZDmWTOKDmgquSKn_0_r505863911_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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