| Name | A3XKDmxdEK5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmSXJKDmyJgKcn_0 |
| Workunit | 222433670 |
| Created | 25 Apr 2024, 13:48:53 UTC |
| Sent | 25 Apr 2024, 16:23:59 UTC |
| Report deadline | 3 May 2024, 16:23:59 UTC |
| Received | 25 Apr 2024, 17:10:12 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10804959 |
| Run time | 44 min 41 sec |
| CPU time | 1 min 20 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 40.52 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.07 GB |
| Peak swap size | 1.62 GB |
| Peak disk usage | 1.07 GB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
12:24:38 (96777): wrapper (7.7.26015): starting
12:24:38 (96777): wrapper: running run_atlas (--nthreads 8)
[2024-04-25 12:24:38] Arguments: --nthreads 8
[2024-04-25 12:24:38] Threads: 8
[2024-04-25 12:24:38] Checking for CVMFS
[2024-04-25 12:24:39] Probing /cvmfs/atlas.cern.ch... OK
[2024-04-25 12:24:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-04-25 12:24:40] Running cvmfs_config stat atlas.cern.ch
[2024-04-25 12:24:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-04-25 12:24:40] 2.11.2.0 96428 19 57304 132032 3 193 13000993 18432001 2079 130560 1 241752 99.482 265577 59936 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2024-04-25 12:24:40] CVMFS is ok
[2024-04-25 12:24:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-25 12:24:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-25 12:24:40] Further information can be found at the LHC@home message board.
[2024-04-25 12:24:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-25 12:24:40] Checking for apptainer binary...
[2024-04-25 12:24:41] Using apptainer found in PATH at /usr/bin/apptainer
[2024-04-25 12:24:41] Running /usr/bin/apptainer --version
[2024-04-25 12:24:41] apptainer version 1.3.0-1.el7
[2024-04-25 12:24:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-25 12:24:57] c-212-13.aglt2.org
[2024-04-25 12:24:57] apptainer works
[2024-04-25 12:24:57] Set ATHENA_PROC_NUMBER=8
[2024-04-25 12:24:57] Set ATHENA_CORE_NUMBER=8
[2024-04-25 12:24:57] Starting ATLAS job with PandaID=6186457721
[2024-04-25 12:24:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-25 13:09:16] *** The last 200 lines of the pilot log: ***
[2024-04-25 13:09:16]
[2024-04-25 13:09:16] None
[2024-04-25 13:09:16] exception has been put in bucket queue belonging to thread 'copytool_out'
[2024-04-25 13:09:16] setting graceful stop in 10 s since there is no point in continuing
[2024-04-25 13:09:16] 2024-04-25 17:06:53,725 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:09:16] 2024-04-25 17:06:58,063 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:09:16] 2024-04-25 17:06:58,064 | WARNING | Traceback (most recent call last):
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-04-25 13:09:16] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/processes.py", line 571, in get_current_cpu_consumption_time
[2024-04-25 13:09:16] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 13:09:16] process = subprocess.Popen(exe,
[2024-04-25 13:09:16] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 13:09:16] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 13:09:16] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 13:09:16] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 13:09:16] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:09:16]
[2024-04-25 13:09:16] 2024-04-25 17:06:58,064 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:09:16] 2024-04-25 17:06:58,064 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-04-25 13:09:16] 2024-04-25 17:06:58,064 | INFO | job 6186457721 has state 'running' - writing heartbeat
[2024-04-25 13:09:16] 2024-04-25 17:06:58,064 | INFO | payload/TRF did not report the number of read events
[2024-04-25 13:09:16] 2024-04-25 17:06:58,072 | INFO | executing command: lscpu
[2024-04-25 13:09:16] 2024-04-25 17:06:58,080 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:09:16] 2024-04-25 17:07:00,586 | INFO | monitor loop #201: job 0:6186457721 is in state 'failed'
[2024-04-25 13:09:16] 2024-04-25 17:07:00,586 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-25 13:09:16] 2024-04-25 17:07:03,090 | INFO | monitor loop #202: job 0:6186457721 is in state 'failed'
[2024-04-25 13:09:16] 2024-04-25 17:07:03,090 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-25 13:09:16] 2024-04-25 17:07:03,164 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-25 13:09:16] 2024-04-25 17:07:03,164 | INFO | will abort loop
[2024-04-25 13:09:16] 2024-04-25 17:07:03,506 | INFO | all data control threads have been joined
[2024-04-25 13:09:16] 2024-04-25 17:07:03,709 | INFO | found 1 job(s) in 20 queues
[2024-04-25 13:09:16] 2024-04-25 17:07:03,709 | INFO | aborting job 6186457721
[2024-04-25 13:09:16] 2024-04-25 17:07:03,866 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-25 13:09:16] 2024-04-25 17:07:03,871 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-04-25 13:09:16] 2024-04-25 17:07:03,871 | INFO | job 6186457721 has state=failed
[2024-04-25 13:09:16] 2024-04-25 17:07:03,871 | INFO | preparing for final server update for job 6186457721 in state='failed'
[2024-04-25 13:09:16] 2024-04-25 17:07:04,170 | INFO | [job] job monitor thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:04,286 | INFO | [data] copytool_in thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:04,372 | INFO | [payload] validate_post thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:04,398 | INFO | all payload control threads have been joined
[2024-04-25 13:09:16] 2024-04-25 17:07:04,421 | INFO | [payload] validate_pre thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:04,512 | INFO | [data] control thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:04,800 | INFO | [job] validate thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:04,808 | INFO | [job] retrieve thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:04,811 | INFO | all job control threads have been joined
[2024-04-25 13:09:16] 2024-04-25 17:07:04,877 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-04-25 13:09:16] 2024-04-25 17:07:04,877 | INFO | [monitor] control thread has ended
[2024-04-25 13:09:16] 2024-04-25 17:07:04,994 | INFO | [payload] failed_post thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:05,006 | INFO | [payload] run_realtimelog thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:05,202 | INFO | [job] create_data_payload thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:05,404 | INFO | [payload] control thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:05,818 | INFO | [job] control thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:06,037 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-25 13:09:16] 2024-04-25 17:07:08,194 | INFO | [payload] execute_payloads thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:10,046 | INFO | [data] queue_monitor thread has finished
[2024-04-25 13:09:16] 2024-04-25 17:07:11,465 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:13,477 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:15,489 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:17,501 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:19,518 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:21,530 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:23,541 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:25,551 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:27,563 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:29,575 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:31,588 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:33,601 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:35,613 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:37,625 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:39,637 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:41,649 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:43,660 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:45,674 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:47,686 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:49,698 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:51,710 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:53,722 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:55,732 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:57,746 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:07:59,758 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:01,770 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:03,782 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:05,794 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:07,806 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:09,818 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:11,830 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:13,841 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:15,853 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:17,865 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:19,880 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:21,894 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:23,906 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:25,918 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:27,930 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:29,942 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:31,954 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:33,966 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:35,978 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:37,990 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:40,002 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:42,014 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:44,025 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:46,037 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:48,049 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:50,061 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:52,073 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:54,085 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:56,099 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:58,112 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:08:59,089 | INFO | proceeding with final server update
[2024-04-25 13:09:16] 2024-04-25 17:08:59,089 | INFO | this job has now completed (state=failed)
[2024-04-25 13:09:16] 2024-04-25 17:08:59,089 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-04-25 13:09:16] 2024-04-25 17:08:59,089 | INFO | job 6186457721 has failed - writing final server update
[2024-04-25 13:09:16] 2024-04-25 17:08:59,089 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2024-04-25 13:09:16] 2024-04-25 17:08:59,090 | INFO | payload/TRF did not report the number of read events
[2024-04-25 13:09:16] 2024-04-25 17:08:59,098 | INFO | executing command: lscpu
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-25 13:09:16] self.target(**self.kwargs)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-25 13:09:16] update_server(job, args)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-25 13:09:16] send_state(job, args, job.state, metadata=metadata)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-25 13:09:16] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-25 13:09:16] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-25 13:09:16] ec, stdout = lscpu()
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-25 13:09:16] ec, stdout, _ = execute(cmd)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 13:09:16] process = subprocess.Popen(exe,
[2024-04-25 13:09:16] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 13:09:16] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 13:09:16] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 13:09:16] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 13:09:16] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7fafef7e7140>)
[2024-04-25 13:09:16] Traceback (most recent call last):
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-25 13:09:16] self.target(**self.kwargs)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-25 13:09:16] update_server(job, args)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-25 13:09:16] send_state(job, args, job.state, metadata=metadata)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-25 13:09:16] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-25 13:09:16] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-25 13:09:16] ec, stdout = lscpu()
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-25 13:09:16] ec, stdout, _ = execute(cmd)
[2024-04-25 13:09:16] File "/tmp/boinchome/slots/1/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-25 13:09:16] process = subprocess.Popen(exe,
[2024-04-25 13:09:16] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-25 13:09:16] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-25 13:09:16] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-25 13:09:16] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-25 13:09:16] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-25 13:09:16]
[2024-04-25 13:09:16] None
[2024-04-25 13:09:16] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-04-25 13:09:16] setting graceful stop in 10 s since there is no point in continuing
[2024-04-25 13:09:16] 2024-04-25 17:09:00,124 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:09:02,136 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:09:04,148 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:09:06,160 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:09:08,171 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140393760696128)>', '<ExcThread(queue_monitor, started 140393345705728)>']
[2024-04-25 13:09:16] 2024-04-25 17:09:10,182 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140393760696128)>'])
[2024-04-25 13:09:16] 2024-04-25 17:09:15,208 | INFO | all workflow threads have been joined
[2024-04-25 13:09:16] 2024-04-25 17:09:15,208 | INFO | end of generic workflow (traces error code: 0)
[2024-04-25 13:09:16] 2024-04-25 17:09:15,208 | INFO | traces error code: 0
[2024-04-25 13:09:16] 2024-04-25 17:09:15,208 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] ==== pilot stdout END ====
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] ==== wrapper stdout RESUME ====
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] pilotpid: 76538
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] Pilot exit status: 0
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] pandaids:
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] No supervise_pilot CHILD process found
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] Test setup, not cleaning
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] ==== wrapper stdout END ====
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] ==== wrapper stderr END ====
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-25 13:09:16] apfmon messages muted
[2024-04-25 13:09:16] *** Error codes and diagnostics ***
[2024-04-25 13:09:16] *** Listing of results directory ***
[2024-04-25 13:09:16] total 561972
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 462745 Apr 25 09:25 pilot3.tar.gz
[2024-04-25 13:09:16] -rwx------ 1 boincer umatlas 32211 Apr 25 09:48 runpilot2-wrapper.sh
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 6173 Apr 25 09:48 queuedata.json
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 100 Apr 25 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-25 13:09:16] -rwxr-xr-x 1 boincer umatlas 7986 Apr 25 12:24 run_atlas
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 105 Apr 25 12:24 job.xml
[2024-04-25 13:09:16] -rw-r--r-- 2 boincer umatlas 571500160 Apr 25 12:24 EVNT.38221905._000001.pool.root.1
[2024-04-25 13:09:16] -rw-r--r-- 2 boincer umatlas 17537 Apr 25 12:24 start_atlas.sh
[2024-04-25 13:09:16] drwxrwx--x 2 boincer umatlas 4096 Apr 25 12:24 shared
[2024-04-25 13:09:16] -rw-r--r-- 2 boincer umatlas 474768 Apr 25 12:24 input.tar.gz
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 0 Apr 25 12:24 boinc_lockfile
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 2591 Apr 25 12:24 pandaJob.out
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 467 Apr 25 12:25 setup.sh.local
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 993235 Apr 25 12:26 agis_schedconf.cvmfs.json
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 0 Apr 25 12:26 agis_ddmendpoints.agis.ALL.json
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 1315307 Apr 25 12:26 cric_ddmendpoints.json
[2024-04-25 13:09:16] drwx------ 4 boincer umatlas 4096 Apr 25 12:26 pilot3
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 848 Apr 25 12:56 heartbeat.json
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 6384 Apr 25 13:02 init_data.xml
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 95 Apr 25 13:06 pilot_heartbeat.json
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 527 Apr 25 13:06 boinc_task_state.xml
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 1025 Apr 25 13:06 memory_monitor_summary.json
[2024-04-25 13:09:16] drwxrwx--- 2 boincer umatlas 4096 Apr 25 13:06 PanDA_Pilot-6186457721
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 8192 Apr 25 13:09 boinc_mmap_file
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 24 Apr 25 13:09 wrapper_checkpoint.txt
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 241635 Apr 25 13:09 pilotlog.txt
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 263671 Apr 25 13:09 log.38221907._000006.job.log.1
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 428 Apr 25 13:09 runtime_log
[2024-04-25 13:09:16] -rw------- 1 boincer umatlas 618 Apr 25 13:09 A3XKDmxdEK5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmSXJKDmyJgKcn.diag
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 11690 Apr 25 13:09 runtime_log.err
[2024-04-25 13:09:16] -rw-r--r-- 1 boincer umatlas 27808 Apr 25 13:09 stderr.txt
[2024-04-25 13:09:17] No HITS result produced
[2024-04-25 13:09:17] *** Contents of shared directory: ***
[2024-04-25 13:09:17] total 558596
[2024-04-25 13:09:17] -rw-r--r-- 2 boincer umatlas 571500160 Apr 25 12:24 ATLAS.root_0
[2024-04-25 13:09:17] -rw-r--r-- 2 boincer umatlas 17537 Apr 25 12:24 start_atlas.sh
[2024-04-25 13:09:17] -rw-r--r-- 2 boincer umatlas 474768 Apr 25 12:24 input.tar.gz
13:09:18 (96777): run_atlas exited; CPU time 80.424760
13:09:18 (96777): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>A3XKDmxdEK5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmSXJKDmyJgKcn_0_r1482887796_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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