Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:40:12 (1898893): wrapper (7.7.26015): starting
03:40:12 (1898893): wrapper: running run_atlas (--nthreads 4)
[2024-04-27 03:40:12] Arguments: --nthreads 4
[2024-04-27 03:40:12] Threads: 4
[2024-04-27 03:40:12] Checking for CVMFS
[2024-04-27 03:40:12] No cvmfs_config command found, will try listing directly
[2024-04-27 03:40:12] CVMFS is ok
[2024-04-27 03:40:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-27 03:40:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-27 03:40:12] Further information can be found at the LHC@home message board.
[2024-04-27 03:40:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-27 03:40:12] Checking for apptainer binary...
[2024-04-27 03:40:12] which: no apptainer in ((null))
[2024-04-27 03:40:12] apptainer is not installed, using version from CVMFS
[2024-04-27 03:40:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-27 03:40:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2024-04-27 03:40:13] apptainer works
[2024-04-27 03:40:13] Set ATHENA_PROC_NUMBER=4
[2024-04-27 03:40:13] Set ATHENA_CORE_NUMBER=4
[2024-04-27 03:40:13] Starting ATLAS job with PandaID=6186095831
[2024-04-27 03:40:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-27 06:00:08]  *** The last 200 lines of the pilot log: ***
[2024-04-27 06:00:08]  direct_access_lan=False
[2024-04-27 06:00:08]  direct_access_wan=False
[2024-04-27 06:00:08]  domain=
[2024-04-27 06:00:08]  filesize=287415
[2024-04-27 06:00:08]  filetype=log
[2024-04-27 06:00:08]  guid=2b9d36de-7822-4628-8c45-8c249764558b
[2024-04-27 06:00:08]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-27 06:00:08]  is_tar=False
[2024-04-27 06:00:08]  lfn=log.38204343._011431.job.log.tgz.1
[2024-04-27 06:00:08]  mtime=0
[2024-04-27 06:00:08]  protocol_id=None
[2024-04-27 06:00:08]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-27 06:00:08]  replicas=None
[2024-04-27 06:00:08]  scope=mc23_13p6TeV
[2024-04-27 06:00:08]  status=None
[2024-04-27 06:00:08]  status_code=0
[2024-04-27 06:00:08]  storage_token=
[2024-04-27 06:00:08]  surl=/scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6186095831/log.38204343._011431.job.log.tgz.1
[2024-04-27 06:00:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/aa/log.38204343._011431.job.log.tgz.1
[2024-04-27 06:00:08]  workdir=None
[2024-04-27 06:00:08] ]
[2024-04-27 06:00:08] 2024-04-27 03:59:43,989 | INFO     | transferring file log.38204343._011431.job.log.tgz.1 from /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6186095831/log.38204343._011431.job.log.tgz.1 to /scratch/b
[2024-04-27 06:00:08] 2024-04-27 03:59:43,989 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6186095831/log.38204343._011431.job.log.tgz.1 /scratch/boinc/var/slot48/slots/0/lo
[2024-04-27 06:00:08] 2024-04-27 03:59:44,008 | INFO     | adding to output.list: log.38204343._011431.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/56/aa/log.38204343._011431.job.log.tg
[2024-04-27 06:00:08] 2024-04-27 03:59:44,009 | INFO     | summary of transferred files:
[2024-04-27 06:00:08] 2024-04-27 03:59:44,009 | INFO     |  -- lfn=log.38204343._011431.job.log.tgz.1, status_code=0, status=transferred
[2024-04-27 06:00:08] 2024-04-27 03:59:44,010 | INFO     | stage-out finished correctly
[2024-04-27 06:00:08] 2024-04-27 03:59:45,650 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-27 06:00:08] 2024-04-27 03:59:45,900 | INFO     | monitor loop #637: job 0:6186095831 is in state 'finished'
[2024-04-27 06:00:08] 2024-04-27 03:59:45,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-27 06:00:08] 2024-04-27 03:59:47,249 | INFO     | job 6186095831 has state=finished
[2024-04-27 06:00:08] 2024-04-27 03:59:47,249 | INFO     | preparing for final server update for job 6186095831 in state='finished'
[2024-04-27 06:00:08] 2024-04-27 03:59:47,249 | INFO     | this job has now completed (state=finished)
[2024-04-27 06:00:08] 2024-04-27 03:59:47,249 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-27 06:00:08] 2024-04-27 03:59:47,250 | INFO     | job 6186095831 has finished - writing final server update
[2024-04-27 06:00:08] 2024-04-27 03:59:47,250 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1571011/.job.ad'
[2024-04-27 06:00:08] 2024-04-27 03:59:47,250 | INFO     | total number of processed events: 400 (read)
[2024-04-27 06:00:08] 2024-04-27 03:59:47,257 | INFO     | executing command: lscpu
[2024-04-27 06:00:08] 2024-04-27 03:59:47,296 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-04-27 06:00:08] 2024-04-27 03:59:47,296 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-27 06:00:08] 2024-04-27 03:59:47,321 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-27 06:00:08] 2024-04-27 03:59:48,403 | INFO     | monitor loop #638: job 0:6186095831 is in state 'finished'
[2024-04-27 06:00:08] 2024-04-27 03:59:48,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-27 06:00:08] 2024-04-27 03:59:50,907 | INFO     | monitor loop #639: job 0:6186095831 is in state 'finished'
[2024-04-27 06:00:08] 2024-04-27 03:59:50,907 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,235 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-27 06:00:08] 2024-04-27 03:59:51,235 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6186095831/memory_monitor_summary.json (trf name=prmon)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,238 | INFO     | extracted standard info from prmon json
[2024-04-27 06:00:08] 2024-04-27 03:59:51,240 | INFO     | extracted standard memory fields from prmon json
[2024-04-27 06:00:08] 2024-04-27 03:59:51,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-27 06:00:08] 2024-04-27 03:59:51,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-27 06:00:08] 2024-04-27 03:59:51,243 | INFO     | fitting pss+swap vs Time
[2024-04-27 06:00:08] 2024-04-27 03:59:51,244 | INFO     | current chi2=4.140124440756149 (change=0.10791112769966357 %)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,244 | INFO     | right removable region: 131
[2024-04-27 06:00:08] 2024-04-27 03:59:51,245 | INFO     | current chi2=1.5891188327925 (change=61.65806077921601 %)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,245 | INFO     | current chi2=0.04442944185982983 (change=97.20414603722519 %)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,246 | INFO     | current chi2=0.001785876292997053 (change=95.98042149925874 %)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,246 | INFO     | current chi2=0.0014136426221353815 (change=20.843194588634688 %)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,246 | INFO     | left removable region: 40
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | current memory leak: 1.60 B/s (using 91 data points, chi2=0.00)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | ..............................
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . Timing measurements:
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . get job = 0 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . initial setup = 1 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . payload setup = 5 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . stage-in = 0 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . payload execution = 8335 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . stage-out = 0 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | . log creation = 0 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,247 | INFO     | ..............................
[2024-04-27 06:00:08] 2024-04-27 03:59:51,309 | INFO     | 
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | job summary report
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | --------------------------------------------------
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | PanDA job id: 6186095831
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | task id: 38204343
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | errors: (none)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | pilot state: finished 
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | transexitcode: 0
[2024-04-27 06:00:08] 2024-04-27 03:59:51,310 | INFO     | exeerrorcode: 0
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | exeerrordiag: 
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | exitcode: 0
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | exitmsg: OK
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | cpuconsumptiontime: 30799 s
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | nevents: 400
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | neventsw: 0
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | pid: 1911911
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | pgrp: 1911911
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | corecount: 4
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | event service: False
[2024-04-27 06:00:08] 2024-04-27 03:59:51,311 | INFO     | sizes: {0: 2375539, 1: 2375738, 5: 2375944, 11: 2376000, 8344: 2403811, 8345: 2403810, 8346: 2412976, 8348: 2413032, 8353: 2413202}
[2024-04-27 06:00:08] 2024-04-27 03:59:51,312 | INFO     | --------------------------------------------------
[2024-04-27 06:00:08] 2024-04-27 03:59:51,312 | INFO     | 
[2024-04-27 06:00:08] 2024-04-27 03:59:51,312 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2024-04-27 06:00:08] 2024-04-27 03:59:51,339 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,339 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,339 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,339 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,339 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,339 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,340 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,341 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,341 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,341 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,341 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-27 06:00:08] 2024-04-27 03:59:51,341 | INFO     | job 6186095831 has completed (purged errors)
[2024-04-27 06:00:08] 2024-04-27 03:59:51,341 | INFO     | overall cleanup function is called
[2024-04-27 06:00:08] 2024-04-27 03:59:52,348 | INFO     | --- collectZombieJob: --- 10, [1911911]
[2024-04-27 06:00:08] 2024-04-27 03:59:52,349 | INFO     | zombie collector waiting for pid 1911911
[2024-04-27 06:00:08] 2024-04-27 03:59:52,349 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-27 06:00:08] 2024-04-27 03:59:53,354 | INFO     | collected zombie processes
[2024-04-27 06:00:08] 2024-04-27 03:59:53,355 | INFO     | will now attempt to kill all subprocesses of pid=1911911
[2024-04-27 06:00:08] 2024-04-27 03:59:53,541 | INFO     | process IDs to be killed: [1911911] (in reverse order)
[2024-04-27 06:00:08] 2024-04-27 03:59:53,746 | WARNING  | found no corresponding commands to process id(s)
[2024-04-27 06:00:08] 2024-04-27 03:59:53,746 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-27 06:00:08] 2024-04-27 03:59:53,770 | INFO     | did not find any defunct processes belonging to 1911911
[2024-04-27 06:00:08] 2024-04-27 03:59:53,786 | INFO     | did not find any defunct processes belonging to 1911911
[2024-04-27 06:00:08] 2024-04-27 03:59:53,787 | INFO     | ready for new job
[2024-04-27 06:00:08] 2024-04-27 03:59:53,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-27 06:00:08] 2024-04-27 03:59:53,789 | INFO     | *************************************
[2024-04-27 06:00:08] 2024-04-27 03:59:53,789 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-27 06:00:08] 2024-04-27 03:59:53,789 | INFO     | *************************************
[2024-04-27 06:00:08] 2024-04-27 03:59:53,789 | INFO     | 
[2024-04-27 06:00:08] 2024-04-27 03:59:53,798 | INFO     | architecture information:
[2024-04-27 06:00:08] 2024-04-27 03:59:53,798 | INFO     | executing command: cat /etc/os-release
[2024-04-27 06:00:08] 2024-04-27 03:59:53,818 | INFO     | cat /etc/os-release:
[2024-04-27 06:00:08] NAME="CentOS Linux"
[2024-04-27 06:00:08] VERSION="7 (Core)"
[2024-04-27 06:00:08] ID="centos"
[2024-04-27 06:00:08] ID_LIKE="rhel fedora"
[2024-04-27 06:00:08] VERSION_ID="7"
[2024-04-27 06:00:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-27 06:00:08] ANSI_COLOR="0;31"
[2024-04-27 06:00:08] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-27 06:00:08] HOME_URL="https://www.centos.org/"
[2024-04-27 06:00:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-27 06:00:08] 
[2024-04-27 06:00:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-27 06:00:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-27 06:00:08] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-27 06:00:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-27 06:00:08] 
[2024-04-27 06:00:08] 2024-04-27 03:59:53,818 | INFO     | *************************************
[2024-04-27 06:00:08] 2024-04-27 03:59:54,321 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2024-04-27 06:00:08] 2024-04-27 03:59:54,342 | INFO     | sufficient remaining disk space (3019006541824 B)
[2024-04-27 06:00:08] 2024-04-27 03:59:54,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-27 06:00:08] 2024-04-27 03:59:54,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-27 06:00:08] 2024-04-27 03:59:54,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-27 06:00:08] 2024-04-27 03:59:54,416 | INFO     | aborting loop
[2024-04-27 06:00:08] 2024-04-27 03:59:54,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-27 06:00:08] 2024-04-27 03:59:54,687 | INFO     | found 0 job(s) in 20 queues
[2024-04-27 06:00:08] 2024-04-27 03:59:54,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-27 06:00:08] 2024-04-27 03:59:54,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-27 06:00:08] 2024-04-27 03:59:55,047 | INFO     | all payload control threads have been joined
[2024-04-27 06:00:08] 2024-04-27 03:59:55,348 | INFO     | [job] retrieve thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:55,362 | INFO     | all data control threads have been joined
[2024-04-27 06:00:08] 2024-04-27 03:59:55,421 | INFO     | [job] job monitor thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:55,503 | INFO     | [payload] execute_payloads thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:55,673 | INFO     | all job control threads have been joined
[2024-04-27 06:00:08] 2024-04-27 03:59:55,768 | INFO     | [data] copytool_in thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,045 | INFO     | [job] validate thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,053 | INFO     | [payload] control thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,173 | INFO     | [payload] validate_pre thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,178 | INFO     | [job] create_data_payload thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,205 | INFO     | [payload] failed_post thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-27 06:00:08] 2024-04-27 03:59:56,309 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-27 06:00:08] 2024-04-27 03:59:56,367 | INFO     | [data] control thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,433 | INFO     | [payload] validate_post thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,638 | INFO     | [data] copytool_out thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:56,674 | INFO     | [job] control thread has finished
[2024-04-27 06:00:08] 2024-04-27 03:59:57,324 | INFO     | [job] queue monitor thread has finished
[2024-04-27 06:00:08] 2024-04-27 04:00:00,269 | INFO     | [data] queue_monitor thread has finished
[2024-04-27 06:00:08] 2024-04-27 04:00:02,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47459191796800)>', '<ExcThread(monitor, started 47459369334528)>']
[2024-04-27 06:00:08] 2024-04-27 04:00:02,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-27 06:00:08] 2024-04-27 04:00:02,729 | INFO     | [monitor] control thread has ended
[2024-04-27 06:00:08] 2024-04-27 04:00:07,319 | INFO     | all workflow threads have been joined
[2024-04-27 06:00:08] 2024-04-27 04:00:07,320 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-27 06:00:08] 2024-04-27 04:00:07,320 | INFO     | traces error code: 0
[2024-04-27 06:00:08] 2024-04-27 04:00:07,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-27 06:00:08] 2024-04-27 04:00:07,430 [wrapper] ==== pilot stdout END ====
[2024-04-27 06:00:08] 2024-04-27 04:00:07,433 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-27 06:00:08] 2024-04-27 04:00:07,434 [wrapper] pilotpid: 1904315
[2024-04-27 06:00:08] 2024-04-27 04:00:07,436 [wrapper] Pilot exit status: 0
[2024-04-27 06:00:08] 2024-04-27 04:00:07,451 [wrapper] pandaids: 6186095831
[2024-04-27 06:00:08] 2024-04-27 04:00:07,536 [wrapper] cleanup: SIGTERM to supervisor_pilot 2653951 1904316
[2024-04-27 06:00:08] 2024-04-27 04:00:07,538 [wrapper] Test setup, not cleaning
[2024-04-27 06:00:08] 2024-04-27 04:00:07,540 [wrapper] ==== wrapper stdout END ====
[2024-04-27 06:00:08] 2024-04-27 04:00:07,541 [wrapper] ==== wrapper stderr END ====
[2024-04-27 06:00:08] 2024-04-27 04:00:07,545 [wrapper] apfmon messages muted
[2024-04-27 06:00:08]  *** Error codes and diagnostics ***
[2024-04-27 06:00:08]     "exeErrorCode": 0,
[2024-04-27 06:00:08]     "exeErrorDiag": "",
[2024-04-27 06:00:08]     "pilotErrorCode": 0,
[2024-04-27 06:00:08]     "pilotErrorDiag": "",
[2024-04-27 06:00:08]  *** Listing of results directory ***
[2024-04-27 06:00:08] total 608960
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc    462745 Apr 25 09:39 pilot3.tar.gz
[2024-04-27 06:00:08] -rwx------ 1 boinc boinc     32211 Apr 25 09:46 runpilot2-wrapper.sh
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc      6720 Apr 25 09:46 queuedata.json
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc       100 Apr 27 03:40 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-27 06:00:08] -rwxr-xr-x 1 boinc boinc      7986 Apr 27 03:40 run_atlas
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc       105 Apr 27 03:40 job.xml
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc      6644 Apr 27 03:40 init_data.xml
[2024-04-27 06:00:08] -rw-r--r-- 2 boinc boinc 450070900 Apr 27 03:40 EVNT.38204341._000099.pool.root.1
[2024-04-27 06:00:08] -rw-r--r-- 2 boinc boinc     17537 Apr 27 03:40 start_atlas.sh
[2024-04-27 06:00:08] drwxrwx--x 2 boinc boinc      4096 Apr 27 03:40 shared
[2024-04-27 06:00:08] -rw-r--r-- 2 boinc boinc    474800 Apr 27 03:40 input.tar.gz
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc         0 Apr 27 03:40 boinc_lockfile
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc      2602 Apr 27 03:40 pandaJob.out
[2024-04-27 06:00:08] -rw------- 1 boinc boinc       424 Apr 27 03:40 setup.sh.local
[2024-04-27 06:00:08] -rw------- 1 boinc boinc    997383 Apr 27 03:40 agis_schedconf.cvmfs.json
[2024-04-27 06:00:08] -rw------- 1 boinc boinc         0 Apr 27 03:40 agis_ddmendpoints.agis.ALL.json
[2024-04-27 06:00:08] -rw------- 1 boinc boinc   1315307 Apr 27 03:40 cric_ddmendpoints.json
[2024-04-27 06:00:08] drwx------ 4 boinc boinc      4096 Apr 27 03:40 pilot3
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc       530 Apr 27 05:59 boinc_task_state.xml
[2024-04-27 06:00:08] -rw------- 1 boinc boinc 167837968 Apr 27 05:59 HITS.38204343._011431.pool.root.1
[2024-04-27 06:00:08] -rw------- 1 boinc boinc      1039 Apr 27 05:59 memory_monitor_summary.json
[2024-04-27 06:00:08] -rw------- 1 boinc boinc    287415 Apr 27 05:59 log.38204343._011431.job.log.tgz.1
[2024-04-27 06:00:08] -rw------- 1 boinc boinc        95 Apr 27 05:59 pilot_heartbeat.json
[2024-04-27 06:00:08] -rw------- 1 boinc boinc      7682 Apr 27 05:59 heartbeat.json
[2024-04-27 06:00:08] -rw------- 1 boinc boinc      4222 Apr 27 06:00 pilotlog.txt
[2024-04-27 06:00:08] -rw------- 1 boinc boinc    801815 Apr 27 06:00 log.38204343._011431.job.log.1
[2024-04-27 06:00:08] -rw------- 1 boinc boinc       357 Apr 27 06:00 output.list
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc       620 Apr 27 06:00 runtime_log
[2024-04-27 06:00:08] -rw------- 1 boinc boinc   1105920 Apr 27 06:00 result.tar.gz
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc     11409 Apr 27 06:00 runtime_log.err
[2024-04-27 06:00:08] -rw------- 1 boinc boinc       655 Apr 27 06:00 5LlNDmWz8J5nsSi4apGgGQJmABFKDmABFKDmRLXKDm3DSKDmmB0ZSn.diag
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc      8192 Apr 27 06:00 boinc_mmap_file
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc        27 Apr 27 06:00 wrapper_checkpoint.txt
[2024-04-27 06:00:08] -rw-r--r-- 1 boinc boinc     21093 Apr 27 06:00 stderr.txt
[2024-04-27 06:00:08] HITS file was successfully produced:
[2024-04-27 06:00:08] -rw------- 1 boinc boinc 167837968 Apr 27 05:59 shared/HITS.pool.root.1
[2024-04-27 06:00:08]  *** Contents of shared directory: ***
[2024-04-27 06:00:08] total 605004
[2024-04-27 06:00:08] -rw-r--r-- 2 boinc boinc 450070900 Apr 27 03:40 ATLAS.root_0
[2024-04-27 06:00:08] -rw-r--r-- 2 boinc boinc     17537 Apr 27 03:40 start_atlas.sh
[2024-04-27 06:00:08] -rw-r--r-- 2 boinc boinc    474800 Apr 27 03:40 input.tar.gz
[2024-04-27 06:00:08] -rw------- 1 boinc boinc 167837968 Apr 27 05:59 HITS.pool.root.1
[2024-04-27 06:00:08] -rw------- 1 boinc boinc   1105920 Apr 27 06:00 result.tar.gz
06:00:10 (1898893): run_atlas exited; CPU time 30602.446406
06:00:10 (1898893): called boinc_finish(0)

</stderr_txt>
]]>

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