Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:26:48 (843230): wrapper (7.7.26015): starting
02:26:48 (843230): wrapper: running run_atlas (--nthreads 4)
[2024-04-27 02:26:48] Arguments: --nthreads 4
[2024-04-27 02:26:48] Threads: 4
[2024-04-27 02:26:48] Checking for CVMFS
[2024-04-27 02:26:48] No cvmfs_config command found, will try listing directly
[2024-04-27 02:26:48] CVMFS is ok
[2024-04-27 02:26:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-27 02:26:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-27 02:26:48] Further information can be found at the LHC@home message board.
[2024-04-27 02:26:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-27 02:26:48] Checking for apptainer binary...
[2024-04-27 02:26:48] which: no apptainer in ((null))
[2024-04-27 02:26:48] apptainer is not installed, using version from CVMFS
[2024-04-27 02:26:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-27 02:26:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2024-04-27 02:26:49] apptainer works
[2024-04-27 02:26:49] Set ATHENA_PROC_NUMBER=4
[2024-04-27 02:26:49] Set ATHENA_CORE_NUMBER=4
[2024-04-27 02:26:49] Starting ATLAS job with PandaID=6185410050
[2024-04-27 02:26:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-27 05:12:21]  *** The last 200 lines of the pilot log: ***
[2024-04-27 05:12:21]  direct_access_lan=False
[2024-04-27 05:12:21]  direct_access_wan=False
[2024-04-27 05:12:21]  domain=
[2024-04-27 05:12:21]  filesize=295044
[2024-04-27 05:12:21]  filetype=log
[2024-04-27 05:12:21]  guid=ab4c043b-b38e-467d-a748-d04ce03b8030
[2024-04-27 05:12:21]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-27 05:12:21]  is_tar=False
[2024-04-27 05:12:21]  lfn=log.38204279._025515.job.log.tgz.1
[2024-04-27 05:12:21]  mtime=0
[2024-04-27 05:12:21]  protocol_id=None
[2024-04-27 05:12:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-27 05:12:21]  replicas=None
[2024-04-27 05:12:21]  scope=mc23_13p6TeV
[2024-04-27 05:12:21]  status=None
[2024-04-27 05:12:21]  status_code=0
[2024-04-27 05:12:21]  storage_token=
[2024-04-27 05:12:21]  surl=/scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6185410050/log.38204279._025515.job.log.tgz.1
[2024-04-27 05:12:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/02/log.38204279._025515.job.log.tgz.1
[2024-04-27 05:12:21]  workdir=None
[2024-04-27 05:12:21] ]
[2024-04-27 05:12:21] 2024-04-27 03:11:53,158 | INFO     | transferring file log.38204279._025515.job.log.tgz.1 from /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6185410050/log.38204279._025515.job.log.tgz.1 to /scratch/b
[2024-04-27 05:12:21] 2024-04-27 03:11:53,158 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6185410050/log.38204279._025515.job.log.tgz.1 /scratch/boinc/var/slot56/slots/0/lo
[2024-04-27 05:12:21] 2024-04-27 03:11:53,173 | INFO     | adding to output.list: log.38204279._025515.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/02/log.38204279._025515.job.log.tg
[2024-04-27 05:12:21] 2024-04-27 03:11:53,174 | INFO     | summary of transferred files:
[2024-04-27 05:12:21] 2024-04-27 03:11:53,174 | INFO     |  -- lfn=log.38204279._025515.job.log.tgz.1, status_code=0, status=transferred
[2024-04-27 05:12:21] 2024-04-27 03:11:53,174 | INFO     | stage-out finished correctly
[2024-04-27 05:12:21] 2024-04-27 03:11:55,628 | WARNING  | process 854628 is no longer using CPU - aborting
[2024-04-27 05:12:21] 2024-04-27 03:11:55,629 | INFO     | will not send any job update
[2024-04-27 05:12:21] 2024-04-27 03:11:56,303 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-27 05:12:21] 2024-04-27 03:11:56,435 | INFO     | job 6185410050 has state=finished
[2024-04-27 05:12:21] 2024-04-27 03:11:56,435 | INFO     | preparing for final server update for job 6185410050 in state='finished'
[2024-04-27 05:12:21] 2024-04-27 03:11:56,436 | INFO     | this job has now completed (state=finished)
[2024-04-27 05:12:21] 2024-04-27 03:11:56,436 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-27 05:12:21] 2024-04-27 03:11:56,436 | INFO     | job 6185410050 has finished - writing final server update
[2024-04-27 05:12:21] 2024-04-27 03:11:56,437 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1871202/.job.ad'
[2024-04-27 05:12:21] 2024-04-27 03:11:56,437 | INFO     | total number of processed events: 400 (read)
[2024-04-27 05:12:21] 2024-04-27 03:11:56,441 | INFO     | executing command: lscpu
[2024-04-27 05:12:21] 2024-04-27 03:11:56,484 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-04-27 05:12:21] 2024-04-27 03:11:56,485 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-27 05:12:21] 2024-04-27 03:11:56,516 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-27 05:12:21] 2024-04-27 03:11:58,132 | INFO     | monitor loop #767: job 0:6185410050 is in state 'finished'
[2024-04-27 05:12:21] 2024-04-27 03:11:58,132 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,524 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-27 05:12:21] 2024-04-27 03:11:59,525 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6185410050/memory_monitor_summary.json (trf name=prmon)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,526 | INFO     | extracted standard info from prmon json
[2024-04-27 05:12:21] 2024-04-27 03:11:59,526 | INFO     | extracted standard memory fields from prmon json
[2024-04-27 05:12:21] 2024-04-27 03:11:59,527 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-27 05:12:21] 2024-04-27 03:11:59,527 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-27 05:12:21] 2024-04-27 03:11:59,530 | INFO     | fitting pss+swap vs Time
[2024-04-27 05:12:21] 2024-04-27 03:11:59,532 | INFO     | current chi2=3.724089680557247 (change=-0.0845677525268699 %)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,532 | INFO     | right removable region: 156
[2024-04-27 05:12:21] 2024-04-27 03:11:59,533 | INFO     | current chi2=1.36240906805265 (change=63.38538156316121 %)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,534 | INFO     | current chi2=0.05897809689771466 (change=95.67104342735955 %)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,535 | INFO     | current chi2=0.028551226819601122 (change=51.59011849921619 %)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,535 | INFO     | current chi2=0.02629313868186143 (change=7.908900559710659 %)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,535 | INFO     | left removable region: 40
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | current memory leak: -3.54 B/s (using 116 data points, chi2=0.01)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | ..............................
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | . Timing measurements:
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | . get job = 0 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | . initial setup = 4 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | . payload setup = 4 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | . stage-in = 0 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,536 | INFO     | . payload execution = 9869 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,537 | INFO     | . stage-out = 0 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,537 | INFO     | . log creation = 0 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,537 | INFO     | ..............................
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | 
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | job summary report
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | --------------------------------------------------
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | PanDA job id: 6185410050
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | task id: 38204279
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | errors: (none)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | pilot state: finished 
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | transexitcode: 0
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | exeerrorcode: 0
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | exeerrordiag: 
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | exitcode: 0
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | exitmsg: OK
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | cpuconsumptiontime: 36801 s
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | nevents: 400
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | neventsw: 0
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | pid: 854628
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | pgrp: 854628
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | corecount: 4
[2024-04-27 05:12:21] 2024-04-27 03:11:59,588 | INFO     | event service: False
[2024-04-27 05:12:21] 2024-04-27 03:11:59,589 | INFO     | sizes: {0: 2374172, 1: 2375719, 4: 2375925, 11: 2375953, 9878: 2404562, 9879: 2413544, 9882: 2413728, 9885: 2413898}
[2024-04-27 05:12:21] 2024-04-27 03:11:59,589 | INFO     | --------------------------------------------------
[2024-04-27 05:12:21] 2024-04-27 03:11:59,589 | INFO     | 
[2024-04-27 05:12:21] 2024-04-27 03:11:59,589 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2024-04-27 05:12:21] 2024-04-27 03:11:59,605 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,606 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,607 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,607 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-27 05:12:21] 2024-04-27 03:11:59,607 | INFO     | job 6185410050 has completed (purged errors)
[2024-04-27 05:12:21] 2024-04-27 03:11:59,607 | INFO     | overall cleanup function is called
[2024-04-27 05:12:21] 2024-04-27 03:12:00,613 | INFO     | --- collectZombieJob: --- 10, [854628]
[2024-04-27 05:12:21] 2024-04-27 03:12:00,613 | INFO     | zombie collector waiting for pid 854628
[2024-04-27 05:12:21] 2024-04-27 03:12:00,613 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-27 05:12:21] 2024-04-27 03:12:01,617 | INFO     | collected zombie processes
[2024-04-27 05:12:21] 2024-04-27 03:12:01,618 | INFO     | will now attempt to kill all subprocesses of pid=854628
[2024-04-27 05:12:21] 2024-04-27 03:12:01,749 | INFO     | process IDs to be killed: [854628] (in reverse order)
[2024-04-27 05:12:21] 2024-04-27 03:12:01,841 | WARNING  | found no corresponding commands to process id(s)
[2024-04-27 05:12:21] 2024-04-27 03:12:01,841 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-27 05:12:21] 2024-04-27 03:12:01,852 | INFO     | did not find any defunct processes belonging to 854628
[2024-04-27 05:12:21] 2024-04-27 03:12:01,861 | INFO     | did not find any defunct processes belonging to 854628
[2024-04-27 05:12:21] 2024-04-27 03:12:01,861 | INFO     | ready for new job
[2024-04-27 05:12:21] 2024-04-27 03:12:01,861 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-27 05:12:21] 2024-04-27 03:12:01,863 | INFO     | *************************************
[2024-04-27 05:12:21] 2024-04-27 03:12:01,863 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-27 05:12:21] 2024-04-27 03:12:01,863 | INFO     | *************************************
[2024-04-27 05:12:21] 2024-04-27 03:12:01,863 | INFO     | 
[2024-04-27 05:12:21] 2024-04-27 03:12:01,867 | INFO     | architecture information:
[2024-04-27 05:12:21] 2024-04-27 03:12:01,867 | INFO     | executing command: cat /etc/os-release
[2024-04-27 05:12:21] 2024-04-27 03:12:01,884 | INFO     | cat /etc/os-release:
[2024-04-27 05:12:21] NAME="CentOS Linux"
[2024-04-27 05:12:21] VERSION="7 (Core)"
[2024-04-27 05:12:21] ID="centos"
[2024-04-27 05:12:21] ID_LIKE="rhel fedora"
[2024-04-27 05:12:21] VERSION_ID="7"
[2024-04-27 05:12:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-27 05:12:21] ANSI_COLOR="0;31"
[2024-04-27 05:12:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-27 05:12:21] HOME_URL="https://www.centos.org/"
[2024-04-27 05:12:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-27 05:12:21] 
[2024-04-27 05:12:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-27 05:12:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-27 05:12:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-27 05:12:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-27 05:12:21] 
[2024-04-27 05:12:21] 2024-04-27 03:12:01,884 | INFO     | *************************************
[2024-04-27 05:12:21] 2024-04-27 03:12:02,387 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2024-04-27 05:12:21] 2024-04-27 03:12:02,401 | INFO     | sufficient remaining disk space (623763259392 B)
[2024-04-27 05:12:21] 2024-04-27 03:12:02,401 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-27 05:12:21] 2024-04-27 03:12:02,402 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-27 05:12:21] 2024-04-27 03:12:02,402 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-27 05:12:21] 2024-04-27 03:12:02,402 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-27 05:12:21] 2024-04-27 03:12:02,402 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-27 05:12:21] 2024-04-27 03:12:02,403 | INFO     | found 0 job(s) in 20 queues
[2024-04-27 05:12:21] 2024-04-27 03:12:02,403 | INFO     | aborting loop
[2024-04-27 05:12:21] 2024-04-27 03:12:02,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-27 05:12:21] 2024-04-27 03:12:02,404 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-27 05:12:21] 2024-04-27 03:12:02,641 | INFO     | all job control threads have been joined
[2024-04-27 05:12:21] 2024-04-27 03:12:02,918 | INFO     | all payload control threads have been joined
[2024-04-27 05:12:21] 2024-04-27 03:12:03,147 | INFO     | all data control threads have been joined
[2024-04-27 05:12:21] 2024-04-27 03:12:03,407 | INFO     | [job] retrieve thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:03,409 | INFO     | [job] job monitor thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:03,646 | INFO     | [job] control thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:03,737 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-27 05:12:21] 2024-04-27 03:12:03,924 | INFO     | [payload] control thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:03,953 | INFO     | [payload] failed_post thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:04,024 | INFO     | [payload] execute_payloads thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:04,152 | INFO     | [data] control thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:04,597 | INFO     | [job] validate thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:04,597 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-27 05:12:21] 2024-04-27 03:12:04,698 | INFO     | [data] copytool_in thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:04,730 | INFO     | [job] create_data_payload thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:04,751 | INFO     | [payload] validate_pre thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:04,803 | INFO     | [payload] validate_post thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:05,599 | INFO     | [job] queue monitor thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:05,742 | INFO     | [data] copytool_out thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:06,409 | INFO     | [data] queue_monitor thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:13,031 | INFO     | job.realtimelogging is not enabled
[2024-04-27 05:12:21] 2024-04-27 03:12:14,036 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-27 05:12:21] 2024-04-27 03:12:15,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47798490211392)>', '<ExcThread(monitor, started 47798663546624)>']
[2024-04-27 05:12:21] 2024-04-27 03:12:16,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-27 05:12:21] 2024-04-27 03:12:16,474 | INFO     | [monitor] control thread has ended
[2024-04-27 05:12:21] 2024-04-27 03:12:20,707 | INFO     | all workflow threads have been joined
[2024-04-27 05:12:21] 2024-04-27 03:12:20,707 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-27 05:12:21] 2024-04-27 03:12:20,707 | INFO     | traces error code: 0
[2024-04-27 05:12:21] 2024-04-27 03:12:20,707 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-27 05:12:21] 2024-04-27 03:12:20,803 [wrapper] ==== pilot stdout END ====
[2024-04-27 05:12:21] 2024-04-27 03:12:20,805 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-27 05:12:21] 2024-04-27 03:12:20,807 [wrapper] pilotpid: 847567
[2024-04-27 05:12:21] 2024-04-27 03:12:20,809 [wrapper] Pilot exit status: 0
[2024-04-27 05:12:21] 2024-04-27 03:12:20,816 [wrapper] pandaids: 6185410050
[2024-04-27 05:12:21] 2024-04-27 03:12:20,869 [wrapper] cleanup: SIGTERM to supervisor_pilot 1283621 847568
[2024-04-27 05:12:21] 2024-04-27 03:12:20,872 [wrapper] Test setup, not cleaning
[2024-04-27 05:12:21] 2024-04-27 03:12:20,874 [wrapper] ==== wrapper stdout END ====
[2024-04-27 05:12:21] 2024-04-27 03:12:20,876 [wrapper] ==== wrapper stderr END ====
[2024-04-27 05:12:21] 2024-04-27 03:12:20,881 [wrapper] apfmon messages muted
[2024-04-27 05:12:21]  *** Error codes and diagnostics ***
[2024-04-27 05:12:21]     "exeErrorCode": 0,
[2024-04-27 05:12:21]     "exeErrorDiag": "",
[2024-04-27 05:12:21]     "pilotErrorCode": 0,
[2024-04-27 05:12:21]     "pilotErrorDiag": "",
[2024-04-27 05:12:21]  *** Listing of results directory ***
[2024-04-27 05:12:21] total 624112
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc    462745 Apr 25 03:43 pilot3.tar.gz
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc      6720 Apr 25 04:01 queuedata.json
[2024-04-27 05:12:21] -rwx------ 1 boinc boinc     32211 Apr 25 04:02 runpilot2-wrapper.sh
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc       100 Apr 27 02:26 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-27 05:12:21] -rwxr-xr-x 1 boinc boinc      7986 Apr 27 02:26 run_atlas
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc       105 Apr 27 02:26 job.xml
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc      6663 Apr 27 02:26 init_data.xml
[2024-04-27 05:12:21] -rw-r--r-- 2 boinc boinc 452972309 Apr 27 02:26 EVNT.38204277._000633.pool.root.1
[2024-04-27 05:12:21] drwxrwx--x 2 boinc boinc      4096 Apr 27 02:26 shared
[2024-04-27 05:12:21] -rw-r--r-- 2 boinc boinc    474801 Apr 27 02:26 input.tar.gz
[2024-04-27 05:12:21] -rw-r--r-- 2 boinc boinc     17537 Apr 27 02:26 start_atlas.sh
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc         0 Apr 27 02:26 boinc_lockfile
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc      2584 Apr 27 02:26 pandaJob.out
[2024-04-27 05:12:21] -rw------- 1 boinc boinc       424 Apr 27 02:26 setup.sh.local
[2024-04-27 05:12:21] -rw------- 1 boinc boinc    997391 Apr 27 02:26 agis_schedconf.cvmfs.json
[2024-04-27 05:12:21] -rw------- 1 boinc boinc         0 Apr 27 02:26 agis_ddmendpoints.agis.ALL.json
[2024-04-27 05:12:21] -rw------- 1 boinc boinc   1315307 Apr 27 02:26 cric_ddmendpoints.json
[2024-04-27 05:12:21] drwx------ 4 boinc boinc      4096 Apr 27 02:27 pilot3
[2024-04-27 05:12:21] -rw------- 1 boinc boinc        95 Apr 27 05:11 pilot_heartbeat.json
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc       530 Apr 27 05:11 boinc_task_state.xml
[2024-04-27 05:12:21] -rw------- 1 boinc boinc 180129979 Apr 27 05:11 HITS.38204279._025515.pool.root.1
[2024-04-27 05:12:21] -rw------- 1 boinc boinc      1047 Apr 27 05:11 memory_monitor_summary.json
[2024-04-27 05:12:21] -rw------- 1 boinc boinc    295044 Apr 27 05:11 log.38204279._025515.job.log.tgz.1
[2024-04-27 05:12:21] -rw------- 1 boinc boinc      7741 Apr 27 05:11 heartbeat.json
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc      8192 Apr 27 05:12 boinc_mmap_file
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc        27 Apr 27 05:12 wrapper_checkpoint.txt
[2024-04-27 05:12:21] -rw------- 1 boinc boinc      4416 Apr 27 05:12 pilotlog.txt
[2024-04-27 05:12:21] -rw------- 1 boinc boinc    953138 Apr 27 05:12 log.38204279._025515.job.log.1
[2024-04-27 05:12:21] -rw------- 1 boinc boinc       357 Apr 27 05:12 output.list
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc       620 Apr 27 05:12 runtime_log
[2024-04-27 05:12:21] -rw------- 1 boinc boinc   1269760 Apr 27 05:12 result.tar.gz
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc     11409 Apr 27 05:12 runtime_log.err
[2024-04-27 05:12:21] -rw------- 1 boinc boinc       655 Apr 27 05:12 AczNDmqc3J5nsSi4apGgGQJmABFKDmABFKDmRLXKDm3qRKDmZXMspn.diag
[2024-04-27 05:12:21] -rw-r--r-- 1 boinc boinc     20986 Apr 27 05:12 stderr.txt
[2024-04-27 05:12:21] HITS file was successfully produced:
[2024-04-27 05:12:21] -rw------- 1 boinc boinc 180129979 Apr 27 05:11 shared/HITS.pool.root.1
[2024-04-27 05:12:21]  *** Contents of shared directory: ***
[2024-04-27 05:12:21] total 620000
[2024-04-27 05:12:21] -rw-r--r-- 2 boinc boinc 452972309 Apr 27 02:26 ATLAS.root_0
[2024-04-27 05:12:21] -rw-r--r-- 2 boinc boinc    474801 Apr 27 02:26 input.tar.gz
[2024-04-27 05:12:21] -rw-r--r-- 2 boinc boinc     17537 Apr 27 02:26 start_atlas.sh
[2024-04-27 05:12:21] -rw------- 1 boinc boinc 180129979 Apr 27 05:11 HITS.pool.root.1
[2024-04-27 05:12:21] -rw------- 1 boinc boinc   1269760 Apr 27 05:12 result.tar.gz
05:12:23 (843230): run_atlas exited; CPU time 36601.236164
05:12:23 (843230): called boinc_finish(0)

</stderr_txt>
]]>

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