Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:34:20 (1043520): wrapper (7.7.26015): starting
19:34:20 (1043520): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 19:34:20] Arguments: --nthreads 4
[2024-04-26 19:34:20] Threads: 4
[2024-04-26 19:34:20] Checking for CVMFS
[2024-04-26 19:34:20] No cvmfs_config command found, will try listing directly
[2024-04-26 19:34:20] CVMFS is ok
[2024-04-26 19:34:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 19:34:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 19:34:20] Further information can be found at the LHC@home message board.
[2024-04-26 19:34:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 19:34:20] Checking for apptainer binary...
[2024-04-26 19:34:20] which: no apptainer in ((null))
[2024-04-26 19:34:20] apptainer is not installed, using version from CVMFS
[2024-04-26 19:34:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 19:34:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2024-04-26 19:34:21] apptainer works
[2024-04-26 19:34:21] Set ATHENA_PROC_NUMBER=4
[2024-04-26 19:34:21] Set ATHENA_CORE_NUMBER=4
[2024-04-26 19:34:21] Starting ATLAS job with PandaID=6185372920
[2024-04-26 19:34:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-27 02:32:13]  *** The last 200 lines of the pilot log: ***
[2024-04-27 02:32:13]  domain=
[2024-04-27 02:32:13]  filesize=427890
[2024-04-27 02:32:13]  filetype=log
[2024-04-27 02:32:13]  guid=6cf03f19-f1a9-43eb-9fc8-0e98e1d1160c
[2024-04-27 02:32:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-27 02:32:13]  is_tar=False
[2024-04-27 02:32:13]  lfn=log.38222146._000186.job.log.tgz.1
[2024-04-27 02:32:13]  mtime=0
[2024-04-27 02:32:13]  protocol_id=None
[2024-04-27 02:32:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-27 02:32:13]  replicas=None
[2024-04-27 02:32:13]  scope=mc23_13p6TeV
[2024-04-27 02:32:13]  status=None
[2024-04-27 02:32:13]  status_code=0
[2024-04-27 02:32:13]  storage_token=
[2024-04-27 02:32:13]  surl=/scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6185372920/log.38222146._000186.job.log.tgz.1
[2024-04-27 02:32:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/d5/log.38222146._000186.job.log.tgz.1
[2024-04-27 02:32:13]  workdir=None
[2024-04-27 02:32:13] ]
[2024-04-27 02:32:13] 2024-04-27 00:31:51,053 | INFO     | transferring file log.38222146._000186.job.log.tgz.1 from /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6185372920/log.38222146._000186.job.log.tgz.1 to /scratch/b
[2024-04-27 02:32:13] 2024-04-27 00:31:51,053 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6185372920/log.38222146._000186.job.log.tgz.1 /scratch/boinc/var/slot28/slots/0/lo
[2024-04-27 02:32:13] 2024-04-27 00:31:51,065 | INFO     | adding to output.list: log.38222146._000186.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9a/d5/log.38222146._000186.job.log.tg
[2024-04-27 02:32:13] 2024-04-27 00:31:51,066 | INFO     | summary of transferred files:
[2024-04-27 02:32:13] 2024-04-27 00:31:51,066 | INFO     |  -- lfn=log.38222146._000186.job.log.tgz.1, status_code=0, status=transferred
[2024-04-27 02:32:13] 2024-04-27 00:31:51,067 | INFO     | stage-out finished correctly
[2024-04-27 02:32:13] 2024-04-27 00:31:51,146 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-27 02:32:13] 2024-04-27 00:31:53,181 | INFO     | job 6185372920 has state=finished
[2024-04-27 02:32:13] 2024-04-27 00:31:53,181 | INFO     | preparing for final server update for job 6185372920 in state='finished'
[2024-04-27 02:32:13] 2024-04-27 00:31:53,182 | INFO     | this job has now completed (state=finished)
[2024-04-27 02:32:13] 2024-04-27 00:31:53,182 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-27 02:32:13] 2024-04-27 00:31:53,182 | INFO     | job 6185372920 has finished - writing final server update
[2024-04-27 02:32:13] 2024-04-27 00:31:53,183 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3440978/.job.ad'
[2024-04-27 02:32:13] 2024-04-27 00:31:53,183 | INFO     | total number of processed events: 400 (read)
[2024-04-27 02:32:13] 2024-04-27 00:31:53,185 | INFO     | executing command: lscpu
[2024-04-27 02:32:13] 2024-04-27 00:31:53,213 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-04-27 02:32:13] 2024-04-27 00:31:53,214 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-27 02:32:13] 2024-04-27 00:31:53,237 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-27 02:32:13] 2024-04-27 00:31:53,855 | INFO     | 25044s have passed since pilot start
[2024-04-27 02:32:13] 2024-04-27 00:31:56,411 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-27 02:32:13] 2024-04-27 00:31:56,411 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6185372920/memory_monitor_summary.json (trf name=prmon)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,412 | INFO     | extracted standard info from prmon json
[2024-04-27 02:32:13] 2024-04-27 00:31:56,412 | INFO     | extracted standard memory fields from prmon json
[2024-04-27 02:32:13] 2024-04-27 00:31:56,412 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-27 02:32:13] 2024-04-27 00:31:56,413 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-27 02:32:13] 2024-04-27 00:31:56,417 | INFO     | fitting pss+swap vs Time
[2024-04-27 02:32:13] 2024-04-27 00:31:56,423 | INFO     | current chi2=3.891000743647328 (change=-0.022526166307280496 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,427 | INFO     | right removable region: 404
[2024-04-27 02:32:13] 2024-04-27 00:31:56,430 | INFO     | current chi2=1.4858722645239715 (change=61.80399150506823 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,433 | INFO     | current chi2=0.08219790223447976 (change=94.46803711213943 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,436 | INFO     | current chi2=0.0423303608809057 (change=48.501896362083464 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,438 | INFO     | current chi2=0.02045231496893965 (change=51.68405243111158 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,441 | INFO     | current chi2=0.012535886237167062 (change=38.70676128250051 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,443 | INFO     | current chi2=0.003041912597194778 (change=75.73436341360569 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,446 | INFO     | current chi2=0.0007205665953142449 (change=76.31205459424626 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,448 | INFO     | current chi2=0.0005826879255849514 (change=19.134757373697504 %)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,448 | INFO     | left removable region: 80
[2024-04-27 02:32:13] 2024-04-27 00:31:56,450 | INFO     | current memory leak: 0.98 B/s (using 324 data points, chi2=0.00)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | ..............................
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | . Timing measurements:
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | . get job = 0 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | . initial setup = 1 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | . payload setup = 7 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | . stage-in = 0 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | . payload execution = 25011 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,451 | INFO     | . stage-out = 0 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,452 | INFO     | . log creation = 0 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,452 | INFO     | ..............................
[2024-04-27 02:32:13] 2024-04-27 00:31:56,509 | INFO     | 
[2024-04-27 02:32:13] 2024-04-27 00:31:56,509 | INFO     | job summary report
[2024-04-27 02:32:13] 2024-04-27 00:31:56,509 | INFO     | --------------------------------------------------
[2024-04-27 02:32:13] 2024-04-27 00:31:56,509 | INFO     | PanDA job id: 6185372920
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | task id: 38222146
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | errors: (none)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | pilot state: finished 
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | transexitcode: 0
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | exeerrorcode: 0
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | exeerrordiag: 
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | exitcode: 0
[2024-04-27 02:32:13] 2024-04-27 00:31:56,510 | INFO     | exitmsg: OK
[2024-04-27 02:32:13] 2024-04-27 00:31:56,511 | INFO     | cpuconsumptiontime: 96369 s
[2024-04-27 02:32:13] 2024-04-27 00:31:56,511 | INFO     | nevents: 400
[2024-04-27 02:32:13] 2024-04-27 00:31:56,511 | INFO     | neventsw: 0
[2024-04-27 02:32:13] 2024-04-27 00:31:56,511 | INFO     | pid: 1054991
[2024-04-27 02:32:13] 2024-04-27 00:31:56,511 | INFO     | pgrp: 1054991
[2024-04-27 02:32:13] 2024-04-27 00:31:56,511 | INFO     | corecount: 4
[2024-04-27 02:32:13] 2024-04-27 00:31:56,511 | INFO     | event service: False
[2024-04-27 02:32:13] 2024-04-27 00:31:56,512 | INFO     | sizes: {0: 2375641, 4: 2375847, 11: 2375875, 25021: 2411346, 25022: 2420384, 25028: 2420498}
[2024-04-27 02:32:13] 2024-04-27 00:31:56,512 | INFO     | --------------------------------------------------
[2024-04-27 02:32:13] 2024-04-27 00:31:56,512 | INFO     | 
[2024-04-27 02:32:13] 2024-04-27 00:31:56,512 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2024-04-27 02:32:13] 2024-04-27 00:31:56,517 | WARNING  | process 1054991 is no longer using CPU - aborting
[2024-04-27 02:32:13] 2024-04-27 00:31:56,517 | INFO     | aborting job monitoring since job object (job id=6185372920) has expired
[2024-04-27 02:32:13] 2024-04-27 00:31:56,532 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,532 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,532 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,532 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,533 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,534 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,534 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,534 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-27 02:32:13] 2024-04-27 00:31:56,534 | INFO     | job 6185372920 has completed (purged errors)
[2024-04-27 02:32:13] 2024-04-27 00:31:56,534 | INFO     | overall cleanup function is called
[2024-04-27 02:32:13] 2024-04-27 00:31:57,541 | INFO     | --- collectZombieJob: --- 10, [1054991]
[2024-04-27 02:32:13] 2024-04-27 00:31:57,541 | INFO     | zombie collector waiting for pid 1054991
[2024-04-27 02:32:13] 2024-04-27 00:31:57,541 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-27 02:32:13] 2024-04-27 00:31:58,546 | INFO     | collected zombie processes
[2024-04-27 02:32:13] 2024-04-27 00:31:58,546 | INFO     | will now attempt to kill all subprocesses of pid=1054991
[2024-04-27 02:32:13] 2024-04-27 00:31:58,642 | INFO     | process IDs to be killed: [1054991] (in reverse order)
[2024-04-27 02:32:13] 2024-04-27 00:31:58,703 | WARNING  | found no corresponding commands to process id(s)
[2024-04-27 02:32:13] 2024-04-27 00:31:58,703 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-27 02:32:13] 2024-04-27 00:31:58,707 | INFO     | did not find any defunct processes belonging to 1054991
[2024-04-27 02:32:13] 2024-04-27 00:31:58,710 | INFO     | did not find any defunct processes belonging to 1054991
[2024-04-27 02:32:13] 2024-04-27 00:31:58,710 | INFO     | ready for new job
[2024-04-27 02:32:13] 2024-04-27 00:31:58,710 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-27 02:32:13] 2024-04-27 00:31:58,712 | INFO     | *************************************
[2024-04-27 02:32:13] 2024-04-27 00:31:58,712 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-27 02:32:13] 2024-04-27 00:31:58,712 | INFO     | *************************************
[2024-04-27 02:32:13] 2024-04-27 00:31:58,712 | INFO     | 
[2024-04-27 02:32:13] 2024-04-27 00:31:58,713 | INFO     | architecture information:
[2024-04-27 02:32:13] 2024-04-27 00:31:58,714 | INFO     | executing command: cat /etc/os-release
[2024-04-27 02:32:13] 2024-04-27 00:31:58,730 | INFO     | cat /etc/os-release:
[2024-04-27 02:32:13] NAME="CentOS Linux"
[2024-04-27 02:32:13] VERSION="7 (Core)"
[2024-04-27 02:32:13] ID="centos"
[2024-04-27 02:32:13] ID_LIKE="rhel fedora"
[2024-04-27 02:32:13] VERSION_ID="7"
[2024-04-27 02:32:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-27 02:32:13] ANSI_COLOR="0;31"
[2024-04-27 02:32:13] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-27 02:32:13] HOME_URL="https://www.centos.org/"
[2024-04-27 02:32:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-27 02:32:13] 
[2024-04-27 02:32:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-27 02:32:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-27 02:32:13] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-27 02:32:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-27 02:32:13] 
[2024-04-27 02:32:13] 2024-04-27 00:31:58,730 | INFO     | *************************************
[2024-04-27 02:32:13] 2024-04-27 00:31:59,233 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2024-04-27 02:32:13] 2024-04-27 00:31:59,256 | INFO     | sufficient remaining disk space (1638172459008 B)
[2024-04-27 02:32:13] 2024-04-27 00:31:59,256 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-27 02:32:13] 2024-04-27 00:31:59,256 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-27 02:32:13] 2024-04-27 00:31:59,257 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-27 02:32:13] 2024-04-27 00:31:59,257 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-27 02:32:13] 2024-04-27 00:31:59,257 | INFO     | found 0 job(s) in 20 queues
[2024-04-27 02:32:13] 2024-04-27 00:31:59,258 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-27 02:32:13] 2024-04-27 00:31:59,258 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-27 02:32:13] 2024-04-27 00:32:00,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-27 02:32:13] 2024-04-27 00:32:00,025 | INFO     | aborting loop
[2024-04-27 02:32:13] 2024-04-27 00:32:00,110 | INFO     | all data control threads have been joined
[2024-04-27 02:32:13] 2024-04-27 00:32:00,262 | INFO     | [job] retrieve thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:00,262 | INFO     | all payload control threads have been joined
[2024-04-27 02:32:13] 2024-04-27 00:32:00,290 | INFO     | [job] create_data_payload thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:00,423 | INFO     | [job] validate thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:00,469 | INFO     | [data] copytool_in thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:00,525 | INFO     | all job control threads have been joined
[2024-04-27 02:32:13] 2024-04-27 00:32:00,542 | INFO     | [payload] validate_post thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,030 | INFO     | [job] job monitor thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,115 | INFO     | [data] control thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,164 | INFO     | [payload] validate_pre thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,228 | INFO     | [payload] failed_post thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,262 | INFO     | [data] copytool_out thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,267 | INFO     | [payload] control thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,387 | INFO     | [payload] execute_payloads thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,519 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-27 02:32:13] 2024-04-27 00:32:01,530 | INFO     | [job] control thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,603 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:01,719 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-27 02:32:13] 2024-04-27 00:32:02,524 | INFO     | [job] queue monitor thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:05,725 | INFO     | [data] queue_monitor thread has finished
[2024-04-27 02:32:13] 2024-04-27 00:32:07,661 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47975157920832)>', '<ExcThread(monitor, started 47975598405376)>']
[2024-04-27 02:32:13] 2024-04-27 00:32:08,303 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-27 02:32:13] 2024-04-27 00:32:08,303 | INFO     | [monitor] control thread has ended
[2024-04-27 02:32:13] 2024-04-27 00:32:12,686 | INFO     | all workflow threads have been joined
[2024-04-27 02:32:13] 2024-04-27 00:32:12,686 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-27 02:32:13] 2024-04-27 00:32:12,686 | INFO     | traces error code: 0
[2024-04-27 02:32:13] 2024-04-27 00:32:12,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-27 02:32:13] 2024-04-27 00:32:12,747 [wrapper] ==== pilot stdout END ====
[2024-04-27 02:32:13] 2024-04-27 00:32:12,754 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-27 02:32:13] 2024-04-27 00:32:12,756 [wrapper] pilotpid: 1047827
[2024-04-27 02:32:13] 2024-04-27 00:32:12,758 [wrapper] Pilot exit status: 0
[2024-04-27 02:32:13] 2024-04-27 00:32:12,773 [wrapper] pandaids: 6185372920
[2024-04-27 02:32:13] 2024-04-27 00:32:12,817 [wrapper] cleanup: SIGTERM to supervisor_pilot 1810888 1047828
[2024-04-27 02:32:13] 2024-04-27 00:32:12,819 [wrapper] Test setup, not cleaning
[2024-04-27 02:32:13] 2024-04-27 00:32:12,821 [wrapper] ==== wrapper stdout END ====
[2024-04-27 02:32:13] 2024-04-27 00:32:12,823 [wrapper] ==== wrapper stderr END ====
[2024-04-27 02:32:13] 2024-04-27 00:32:12,828 [wrapper] apfmon messages muted
[2024-04-27 02:32:13]  *** Error codes and diagnostics ***
[2024-04-27 02:32:13]     "exeErrorCode": 0,
[2024-04-27 02:32:13]     "exeErrorDiag": "",
[2024-04-27 02:32:13]     "pilotErrorCode": 0,
[2024-04-27 02:32:13]     "pilotErrorDiag": "",
[2024-04-27 02:32:13]  *** Listing of results directory ***
[2024-04-27 02:32:13] total 842504
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc    462745 Apr 25 02:30 pilot3.tar.gz
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc      6720 Apr 25 02:31 queuedata.json
[2024-04-27 02:32:13] -rwx------ 1 boinc boinc     32211 Apr 25 02:31 runpilot2-wrapper.sh
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc       100 Apr 26 19:34 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-27 02:32:13] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 19:34 run_atlas
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc       105 Apr 26 19:34 job.xml
[2024-04-27 02:32:13] -rw-r--r-- 2 boinc boinc 572049934 Apr 26 19:34 EVNT.38222141._000009.pool.root.1
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc      6457 Apr 26 19:34 init_data.xml
[2024-04-27 02:32:13] drwxrwx--x 2 boinc boinc      4096 Apr 26 19:34 shared
[2024-04-27 02:32:13] -rw-r--r-- 2 boinc boinc    474794 Apr 26 19:34 input.tar.gz
[2024-04-27 02:32:13] -rw-r--r-- 2 boinc boinc     17537 Apr 26 19:34 start_atlas.sh
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc         0 Apr 26 19:34 boinc_lockfile
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc      2592 Apr 26 19:34 pandaJob.out
[2024-04-27 02:32:13] -rw------- 1 boinc boinc       424 Apr 26 19:34 setup.sh.local
[2024-04-27 02:32:13] -rw------- 1 boinc boinc    997399 Apr 26 19:34 agis_schedconf.cvmfs.json
[2024-04-27 02:32:13] -rw------- 1 boinc boinc   1315307 Apr 26 19:34 cric_ddmendpoints.json
[2024-04-27 02:32:13] drwx------ 4 boinc boinc      4096 Apr 26 19:34 pilot3
[2024-04-27 02:32:13] -rw------- 1 boinc boinc 281734206 Apr 27 02:31 HITS.38222146._000186.pool.root.1
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc       531 Apr 27 02:31 boinc_task_state.xml
[2024-04-27 02:32:13] -rw------- 1 boinc boinc      1048 Apr 27 02:31 memory_monitor_summary.json
[2024-04-27 02:32:13] -rw------- 1 boinc boinc         0 Apr 27 02:31 agis_ddmendpoints.agis.ALL.json
[2024-04-27 02:32:13] -rw------- 1 boinc boinc    427890 Apr 27 02:31 log.38222146._000186.job.log.tgz.1
[2024-04-27 02:32:13] -rw------- 1 boinc boinc        95 Apr 27 02:31 pilot_heartbeat.json
[2024-04-27 02:32:13] -rw------- 1 boinc boinc      7733 Apr 27 02:31 heartbeat.json
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc      8192 Apr 27 02:32 boinc_mmap_file
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc        28 Apr 27 02:32 wrapper_checkpoint.txt
[2024-04-27 02:32:13] -rw------- 1 boinc boinc      4345 Apr 27 02:32 pilotlog.txt
[2024-04-27 02:32:13] -rw------- 1 boinc boinc   2301693 Apr 27 02:32 log.38222146._000186.job.log.1
[2024-04-27 02:32:13] -rw------- 1 boinc boinc       357 Apr 27 02:32 output.list
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc       620 Apr 27 02:32 runtime_log
[2024-04-27 02:32:13] -rw------- 1 boinc boinc   2744320 Apr 27 02:32 result.tar.gz
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc     11410 Apr 27 02:32 runtime_log.err
[2024-04-27 02:32:13] -rw------- 1 boinc boinc       658 Apr 27 02:32 cJZLDmcC2J5nfZGDcpSWOuwoABFKDmABFKDmtxRSDm0GJKDmHMCCPm.diag
[2024-04-27 02:32:13] -rw-r--r-- 1 boinc boinc     21165 Apr 27 02:32 stderr.txt
[2024-04-27 02:32:13] HITS file was successfully produced:
[2024-04-27 02:32:13] -rw------- 1 boinc boinc 281734206 Apr 27 02:31 shared/HITS.pool.root.1
[2024-04-27 02:32:13]  *** Contents of shared directory: ***
[2024-04-27 02:32:13] total 836948
[2024-04-27 02:32:13] -rw-r--r-- 2 boinc boinc 572049934 Apr 26 19:34 ATLAS.root_0
[2024-04-27 02:32:13] -rw-r--r-- 2 boinc boinc    474794 Apr 26 19:34 input.tar.gz
[2024-04-27 02:32:13] -rw-r--r-- 2 boinc boinc     17537 Apr 26 19:34 start_atlas.sh
[2024-04-27 02:32:13] -rw------- 1 boinc boinc 281734206 Apr 27 02:31 HITS.pool.root.1
[2024-04-27 02:32:13] -rw------- 1 boinc boinc   2744320 Apr 27 02:32 result.tar.gz
02:32:14 (1043520): run_atlas exited; CPU time 95940.842522
02:32:14 (1043520): called boinc_finish(0)

</stderr_txt>
]]>

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