Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:18:27 (1816091): wrapper (7.7.26015): starting
10:18:27 (1816091): wrapper: running run_atlas (--nthreads 4)
[2024-04-27 10:18:27] Arguments: --nthreads 4
[2024-04-27 10:18:27] Threads: 4
[2024-04-27 10:18:27] Checking for CVMFS
[2024-04-27 10:18:27] No cvmfs_config command found, will try listing directly
[2024-04-27 10:18:27] CVMFS is ok
[2024-04-27 10:18:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-27 10:18:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-27 10:18:27] Further information can be found at the LHC@home message board.
[2024-04-27 10:18:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-27 10:18:27] Checking for apptainer binary...
[2024-04-27 10:18:27] which: no apptainer in ((null))
[2024-04-27 10:18:27] apptainer is not installed, using version from CVMFS
[2024-04-27 10:18:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-27 10:18:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2024-04-27 10:18:28] apptainer works
[2024-04-27 10:18:28] Set ATHENA_PROC_NUMBER=4
[2024-04-27 10:18:28] Set ATHENA_CORE_NUMBER=4
[2024-04-27 10:18:28] Starting ATLAS job with PandaID=6185330123
[2024-04-27 10:18:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-27 14:16:27]  *** The last 200 lines of the pilot log: ***
[2024-04-27 14:16:27]  direct_access_wan=False
[2024-04-27 14:16:27]  domain=
[2024-04-27 14:16:27]  filesize=316957
[2024-04-27 14:16:27]  filetype=log
[2024-04-27 14:16:27]  guid=002386c0-2fd9-4e13-89a3-2589042cd0cc
[2024-04-27 14:16:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-27 14:16:27]  is_tar=False
[2024-04-27 14:16:27]  lfn=log.38207235._001250.job.log.tgz.1
[2024-04-27 14:16:27]  mtime=0
[2024-04-27 14:16:27]  protocol_id=None
[2024-04-27 14:16:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-27 14:16:27]  replicas=None
[2024-04-27 14:16:27]  scope=mc23_13p6TeV
[2024-04-27 14:16:27]  status=None
[2024-04-27 14:16:27]  status_code=0
[2024-04-27 14:16:27]  storage_token=
[2024-04-27 14:16:27]  surl=/scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6185330123/log.38207235._001250.job.log.tgz.1
[2024-04-27 14:16:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/8b/log.38207235._001250.job.log.tgz.1
[2024-04-27 14:16:27]  workdir=None
[2024-04-27 14:16:27] ]
[2024-04-27 14:16:27] 2024-04-27 12:16:06,079 | WARNING  | aborting job monitor tasks since payload process 1827640 is not running
[2024-04-27 14:16:27] 2024-04-27 12:16:06,080 | INFO     | will not send any job update
[2024-04-27 14:16:27] 2024-04-27 12:16:06,113 | INFO     | transferring file log.38207235._001250.job.log.tgz.1 from /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6185330123/log.38207235._001250.job.log.tgz.1 to /scratch/b
[2024-04-27 14:16:27] 2024-04-27 12:16:06,113 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6185330123/log.38207235._001250.job.log.tgz.1 /scratch/boinc/var/slot40/slots/0/lo
[2024-04-27 14:16:27] 2024-04-27 12:16:06,126 | INFO     | adding to output.list: log.38207235._001250.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c3/8b/log.38207235._001250.job.log.tg
[2024-04-27 14:16:27] 2024-04-27 12:16:06,127 | INFO     | summary of transferred files:
[2024-04-27 14:16:27] 2024-04-27 12:16:06,127 | INFO     |  -- lfn=log.38207235._001250.job.log.tgz.1, status_code=0, status=transferred
[2024-04-27 14:16:27] 2024-04-27 12:16:06,127 | INFO     | stage-out finished correctly
[2024-04-27 14:16:27] 2024-04-27 12:16:06,960 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-27 14:16:27] 2024-04-27 12:16:07,309 | INFO     | job 6185330123 has state=finished
[2024-04-27 14:16:27] 2024-04-27 12:16:07,309 | INFO     | preparing for final server update for job 6185330123 in state='finished'
[2024-04-27 14:16:27] 2024-04-27 12:16:07,322 | INFO     | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /scratch/boinc/var/slot40/slots/0/PanDA_Pilot
[2024-04-27 14:16:27] 2024-04-27 12:16:08,582 | INFO     | monitor loop #1082: job 0:6185330123 is in state 'finished'
[2024-04-27 14:16:27] 2024-04-27 12:16:08,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-27 14:16:27] 2024-04-27 12:16:08,603 | INFO     | this job has now completed (state=finished)
[2024-04-27 14:16:27] 2024-04-27 12:16:08,603 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-27 14:16:27] 2024-04-27 12:16:08,603 | INFO     | job 6185330123 has finished - writing final server update
[2024-04-27 14:16:27] 2024-04-27 12:16:08,604 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_97867/.job.ad'
[2024-04-27 14:16:27] 2024-04-27 12:16:08,604 | INFO     | total number of processed events: 400 (read)
[2024-04-27 14:16:27] 2024-04-27 12:16:08,607 | INFO     | executing command: lscpu
[2024-04-27 14:16:27] 2024-04-27 12:16:08,632 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-04-27 14:16:27] 2024-04-27 12:16:08,632 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-27 14:16:27] 2024-04-27 12:16:08,652 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-27 14:16:27] 2024-04-27 12:16:11,085 | INFO     | monitor loop #1083: job 0:6185330123 is in state 'finished'
[2024-04-27 14:16:27] 2024-04-27 12:16:11,086 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,457 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-27 14:16:27] 2024-04-27 12:16:11,457 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6185330123/memory_monitor_summary.json (trf name=prmon)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,458 | INFO     | extracted standard info from prmon json
[2024-04-27 14:16:27] 2024-04-27 12:16:11,458 | INFO     | extracted standard memory fields from prmon json
[2024-04-27 14:16:27] 2024-04-27 12:16:11,458 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-27 14:16:27] 2024-04-27 12:16:11,459 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-27 14:16:27] 2024-04-27 12:16:11,461 | INFO     | fitting pss+swap vs Time
[2024-04-27 14:16:27] 2024-04-27 12:16:11,463 | INFO     | current chi2=3.849848729496889 (change=16.93463541283401 %)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,463 | INFO     | right removable region: 228
[2024-04-27 14:16:27] 2024-04-27 12:16:11,465 | INFO     | current chi2=2.3215966033625057 (change=49.90861152411195 %)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,466 | INFO     | current chi2=0.9171149298168442 (change=60.496370106308206 %)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,467 | INFO     | current chi2=0.8487536795664737 (change=7.453945849951736 %)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,467 | INFO     | left removable region: 30
[2024-04-27 14:16:27] 2024-04-27 12:16:11,468 | INFO     | current memory leak: -1.66 B/s (using 198 data points, chi2=0.01)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,468 | INFO     | ..............................
[2024-04-27 14:16:27] 2024-04-27 12:16:11,468 | INFO     | . Timing measurements:
[2024-04-27 14:16:27] 2024-04-27 12:16:11,468 | INFO     | . get job = 0 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,468 | INFO     | . initial setup = 1 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,468 | INFO     | . payload setup = 4 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,469 | INFO     | . stage-in = 0 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,469 | INFO     | . payload execution = 14228 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,469 | INFO     | . stage-out = 0 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,469 | INFO     | . log creation = 0 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,469 | INFO     | ..............................
[2024-04-27 14:16:27] 2024-04-27 12:16:11,526 | INFO     | 
[2024-04-27 14:16:27] 2024-04-27 12:16:11,527 | INFO     | job summary report
[2024-04-27 14:16:27] 2024-04-27 12:16:11,527 | INFO     | --------------------------------------------------
[2024-04-27 14:16:27] 2024-04-27 12:16:11,527 | INFO     | PanDA job id: 6185330123
[2024-04-27 14:16:27] 2024-04-27 12:16:11,527 | INFO     | task id: 38207235
[2024-04-27 14:16:27] 2024-04-27 12:16:11,527 | INFO     | errors: (none)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,527 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-27 14:16:27] 2024-04-27 12:16:11,527 | INFO     | pilot state: finished 
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | transexitcode: 0
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | exeerrorcode: 0
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | exeerrordiag: 
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | exitcode: 0
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | exitmsg: OK
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | cpuconsumptiontime: 53615 s
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | nevents: 400
[2024-04-27 14:16:27] 2024-04-27 12:16:11,528 | INFO     | neventsw: 0
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | pid: 1827640
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | pgrp: 1827640
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | corecount: 4
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | event service: False
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | sizes: {0: 2375726, 3: 2375932, 11: 2375960, 14235: 2406571, 14236: 2415553, 14237: 2415609, 14242: 2415907}
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | --------------------------------------------------
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | 
[2024-04-27 14:16:27] 2024-04-27 12:16:11,529 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2024-04-27 14:16:27] 2024-04-27 12:16:11,547 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,547 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,548 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,548 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,548 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,548 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,548 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,548 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,548 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,549 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,550 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,550 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,550 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-27 14:16:27] 2024-04-27 12:16:11,550 | INFO     | job 6185330123 has completed (purged errors)
[2024-04-27 14:16:27] 2024-04-27 12:16:11,550 | INFO     | overall cleanup function is called
[2024-04-27 14:16:27] 2024-04-27 12:16:12,557 | INFO     | --- collectZombieJob: --- 10, [1827640]
[2024-04-27 14:16:27] 2024-04-27 12:16:12,557 | INFO     | zombie collector waiting for pid 1827640
[2024-04-27 14:16:27] 2024-04-27 12:16:12,558 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-27 14:16:27] 2024-04-27 12:16:13,561 | INFO     | collected zombie processes
[2024-04-27 14:16:27] 2024-04-27 12:16:13,562 | INFO     | will now attempt to kill all subprocesses of pid=1827640
[2024-04-27 14:16:27] 2024-04-27 12:16:13,680 | INFO     | process IDs to be killed: [1827640] (in reverse order)
[2024-04-27 14:16:27] 2024-04-27 12:16:13,745 | WARNING  | found no corresponding commands to process id(s)
[2024-04-27 14:16:27] 2024-04-27 12:16:13,745 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-27 14:16:27] 2024-04-27 12:16:13,749 | INFO     | did not find any defunct processes belonging to 1827640
[2024-04-27 14:16:27] 2024-04-27 12:16:13,752 | INFO     | did not find any defunct processes belonging to 1827640
[2024-04-27 14:16:27] 2024-04-27 12:16:13,752 | INFO     | ready for new job
[2024-04-27 14:16:27] 2024-04-27 12:16:13,753 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-27 14:16:27] 2024-04-27 12:16:13,754 | INFO     | *************************************
[2024-04-27 14:16:27] 2024-04-27 12:16:13,754 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-27 14:16:27] 2024-04-27 12:16:13,754 | INFO     | *************************************
[2024-04-27 14:16:27] 2024-04-27 12:16:13,754 | INFO     | 
[2024-04-27 14:16:27] 2024-04-27 12:16:13,755 | INFO     | architecture information:
[2024-04-27 14:16:27] 2024-04-27 12:16:13,756 | INFO     | executing command: cat /etc/os-release
[2024-04-27 14:16:27] 2024-04-27 12:16:13,765 | INFO     | cat /etc/os-release:
[2024-04-27 14:16:27] NAME="CentOS Linux"
[2024-04-27 14:16:27] VERSION="7 (Core)"
[2024-04-27 14:16:27] ID="centos"
[2024-04-27 14:16:27] ID_LIKE="rhel fedora"
[2024-04-27 14:16:27] VERSION_ID="7"
[2024-04-27 14:16:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-27 14:16:27] ANSI_COLOR="0;31"
[2024-04-27 14:16:27] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-27 14:16:27] HOME_URL="https://www.centos.org/"
[2024-04-27 14:16:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-27 14:16:27] 
[2024-04-27 14:16:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-27 14:16:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-27 14:16:27] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-27 14:16:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-27 14:16:27] 
[2024-04-27 14:16:27] 2024-04-27 12:16:13,765 | INFO     | *************************************
[2024-04-27 14:16:27] 2024-04-27 12:16:14,267 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2024-04-27 14:16:27] 2024-04-27 12:16:14,289 | INFO     | sufficient remaining disk space (1634763538432 B)
[2024-04-27 14:16:27] 2024-04-27 12:16:14,289 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-27 14:16:27] 2024-04-27 12:16:14,289 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-27 14:16:27] 2024-04-27 12:16:14,290 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-27 14:16:27] 2024-04-27 12:16:14,290 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-27 14:16:27] 2024-04-27 12:16:14,290 | INFO     | found 0 job(s) in 20 queues
[2024-04-27 14:16:27] 2024-04-27 12:16:14,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-27 14:16:27] 2024-04-27 12:16:14,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-27 14:16:27] 2024-04-27 12:16:14,339 | INFO     | all data control threads have been joined
[2024-04-27 14:16:27] 2024-04-27 12:16:14,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-27 14:16:27] 2024-04-27 12:16:14,594 | INFO     | aborting loop
[2024-04-27 14:16:27] 2024-04-27 12:16:14,764 | INFO     | all job control threads have been joined
[2024-04-27 14:16:27] 2024-04-27 12:16:14,766 | INFO     | all payload control threads have been joined
[2024-04-27 14:16:27] 2024-04-27 12:16:15,294 | INFO     | [job] retrieve thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:15,343 | INFO     | [data] control thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:15,598 | INFO     | [job] job monitor thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:15,744 | INFO     | [payload] validate_post thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:15,769 | INFO     | [job] control thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:15,771 | INFO     | [payload] control thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,295 | INFO     | [data] copytool_out thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,347 | INFO     | [payload] execute_payloads thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,528 | INFO     | [payload] validate_pre thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,537 | INFO     | [job] validate thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,537 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-27 14:16:27] 2024-04-27 12:16:16,636 | INFO     | [job] create_data_payload thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,706 | INFO     | [data] copytool_in thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,737 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:16,809 | INFO     | [payload] failed_post thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:17,524 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-27 14:16:27] 2024-04-27 12:16:17,542 | INFO     | [job] queue monitor thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:21,530 | INFO     | [data] queue_monitor thread has finished
[2024-04-27 14:16:27] 2024-04-27 12:16:21,955 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47913485591616)>', '<ExcThread(monitor, started 47913992468224)>']
[2024-04-27 14:16:27] 2024-04-27 12:16:22,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-27 14:16:27] 2024-04-27 12:16:22,330 | INFO     | [monitor] control thread has ended
[2024-04-27 14:16:27] 2024-04-27 12:16:26,980 | INFO     | all workflow threads have been joined
[2024-04-27 14:16:27] 2024-04-27 12:16:26,981 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-27 14:16:27] 2024-04-27 12:16:26,981 | INFO     | traces error code: 0
[2024-04-27 14:16:27] 2024-04-27 12:16:26,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-27 14:16:27] 2024-04-27 12:16:27,041 [wrapper] ==== pilot stdout END ====
[2024-04-27 14:16:27] 2024-04-27 12:16:27,043 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-27 14:16:27] 2024-04-27 12:16:27,045 [wrapper] pilotpid: 1820386
[2024-04-27 14:16:27] 2024-04-27 12:16:27,047 [wrapper] Pilot exit status: 0
[2024-04-27 14:16:27] 2024-04-27 12:16:27,055 [wrapper] pandaids: 6185330123
[2024-04-27 14:16:27] 2024-04-27 12:16:27,110 [wrapper] cleanup: SIGTERM to supervisor_pilot 2231854 1820387
[2024-04-27 14:16:27] 2024-04-27 12:16:27,113 [wrapper] Test setup, not cleaning
[2024-04-27 14:16:27] 2024-04-27 12:16:27,115 [wrapper] ==== wrapper stdout END ====
[2024-04-27 14:16:27] 2024-04-27 12:16:27,117 [wrapper] ==== wrapper stderr END ====
[2024-04-27 14:16:27] 2024-04-27 12:16:27,124 [wrapper] apfmon messages muted
[2024-04-27 14:16:27]  *** Error codes and diagnostics ***
[2024-04-27 14:16:27]     "exeErrorCode": 0,
[2024-04-27 14:16:27]     "exeErrorDiag": "",
[2024-04-27 14:16:27]     "pilotErrorCode": 0,
[2024-04-27 14:16:27]     "pilotErrorDiag": "",
[2024-04-27 14:16:27]  *** Listing of results directory ***
[2024-04-27 14:16:27] total 698192
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc    462745 Apr 24 22:02 pilot3.tar.gz
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc      6720 Apr 24 22:18 queuedata.json
[2024-04-27 14:16:27] -rwx------ 1 boinc boinc     32211 Apr 24 22:18 runpilot2-wrapper.sh
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc       100 Apr 27 10:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-27 14:16:27] -rwxr-xr-x 1 boinc boinc      7986 Apr 27 10:18 run_atlas
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc       105 Apr 27 10:18 job.xml
[2024-04-27 14:16:27] -rw-r--r-- 2 boinc boinc 514704952 Apr 27 10:18 EVNT.38207233._000049.pool.root.1
[2024-04-27 14:16:27] -rw-r--r-- 2 boinc boinc     17537 Apr 27 10:18 start_atlas.sh
[2024-04-27 14:16:27] drwxrwx--x 2 boinc boinc      4096 Apr 27 10:18 shared
[2024-04-27 14:16:27] -rw-r--r-- 2 boinc boinc    474812 Apr 27 10:18 input.tar.gz
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc      6455 Apr 27 10:18 init_data.xml
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc         0 Apr 27 10:18 boinc_lockfile
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc      2675 Apr 27 10:18 pandaJob.out
[2024-04-27 14:16:27] -rw------- 1 boinc boinc       424 Apr 27 10:18 setup.sh.local
[2024-04-27 14:16:27] -rw------- 1 boinc boinc    997441 Apr 27 10:18 agis_schedconf.cvmfs.json
[2024-04-27 14:16:27] -rw------- 1 boinc boinc   1315307 Apr 27 10:18 cric_ddmendpoints.json
[2024-04-27 14:16:27] drwx------ 4 boinc boinc      4096 Apr 27 10:18 pilot3
[2024-04-27 14:16:27] -rw------- 1 boinc boinc        95 Apr 27 14:15 pilot_heartbeat.json
[2024-04-27 14:16:27] -rw------- 1 boinc boinc 193458032 Apr 27 14:15 HITS.38207235._001250.pool.root.1
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc       531 Apr 27 14:15 boinc_task_state.xml
[2024-04-27 14:16:27] -rw------- 1 boinc boinc      1051 Apr 27 14:16 memory_monitor_summary.json
[2024-04-27 14:16:27] -rw------- 1 boinc boinc         0 Apr 27 14:16 agis_ddmendpoints.agis.ALL.json
[2024-04-27 14:16:27] -rw------- 1 boinc boinc    316957 Apr 27 14:16 log.38207235._001250.job.log.tgz.1
[2024-04-27 14:16:27] -rw------- 1 boinc boinc      7741 Apr 27 14:16 heartbeat.json
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc      8192 Apr 27 14:16 boinc_mmap_file
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc        28 Apr 27 14:16 wrapper_checkpoint.txt
[2024-04-27 14:16:27] -rw------- 1 boinc boinc      4345 Apr 27 14:16 pilotlog.txt
[2024-04-27 14:16:27] -rw------- 1 boinc boinc   1328581 Apr 27 14:16 log.38207235._001250.job.log.1
[2024-04-27 14:16:27] -rw------- 1 boinc boinc       357 Apr 27 14:16 output.list
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc       620 Apr 27 14:16 runtime_log
[2024-04-27 14:16:27] -rw------- 1 boinc boinc   1669120 Apr 27 14:16 result.tar.gz
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc     11410 Apr 27 14:16 runtime_log.err
[2024-04-27 14:16:27] -rw------- 1 boinc boinc       658 Apr 27 14:16 SNRMDmcFyJ5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmDDJKDmBCNvHm.diag
[2024-04-27 14:16:27] -rw-r--r-- 1 boinc boinc     21231 Apr 27 14:16 stderr.txt
[2024-04-27 14:16:27] HITS file was successfully produced:
[2024-04-27 14:16:27] -rw------- 1 boinc boinc 193458032 Apr 27 14:15 shared/HITS.pool.root.1
[2024-04-27 14:16:27]  *** Contents of shared directory: ***
[2024-04-27 14:16:27] total 693692
[2024-04-27 14:16:27] -rw-r--r-- 2 boinc boinc 514704952 Apr 27 10:18 ATLAS.root_0
[2024-04-27 14:16:27] -rw-r--r-- 2 boinc boinc     17537 Apr 27 10:18 start_atlas.sh
[2024-04-27 14:16:27] -rw-r--r-- 2 boinc boinc    474812 Apr 27 10:18 input.tar.gz
[2024-04-27 14:16:27] -rw------- 1 boinc boinc 193458032 Apr 27 14:15 HITS.pool.root.1
[2024-04-27 14:16:27] -rw------- 1 boinc boinc   1669120 Apr 27 14:16 result.tar.gz
14:16:29 (1816091): run_atlas exited; CPU time 53384.857789
14:16:29 (1816091): called boinc_finish(0)

</stderr_txt>
]]>

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