Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:39:44 (1616518): wrapper (7.7.26015): starting
02:39:44 (1616518): wrapper: running run_atlas (--nthreads 4)
[2024-04-27 02:39:44] Arguments: --nthreads 4
[2024-04-27 02:39:44] Threads: 4
[2024-04-27 02:39:44] Checking for CVMFS
[2024-04-27 02:39:44] No cvmfs_config command found, will try listing directly
[2024-04-27 02:39:44] CVMFS is ok
[2024-04-27 02:39:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-27 02:39:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-27 02:39:44] Further information can be found at the LHC@home message board.
[2024-04-27 02:39:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-27 02:39:44] Checking for apptainer binary...
[2024-04-27 02:39:44] which: no apptainer in ((null))
[2024-04-27 02:39:44] apptainer is not installed, using version from CVMFS
[2024-04-27 02:39:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-27 02:39:45] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2024-04-27 02:39:45] apptainer works
[2024-04-27 02:39:45] Set ATHENA_PROC_NUMBER=4
[2024-04-27 02:39:45] Set ATHENA_CORE_NUMBER=4
[2024-04-27 02:39:45] Starting ATLAS job with PandaID=6185311929
[2024-04-27 02:39:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-27 04:57:46]  *** The last 200 lines of the pilot log: ***
[2024-04-27 04:57:46]  direct_access_lan=False
[2024-04-27 04:57:46]  direct_access_wan=False
[2024-04-27 04:57:46]  domain=
[2024-04-27 04:57:46]  filesize=286003
[2024-04-27 04:57:46]  filetype=log
[2024-04-27 04:57:46]  guid=bbf33a7c-9c43-4088-92ea-7ab009051dd8
[2024-04-27 04:57:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-27 04:57:46]  is_tar=False
[2024-04-27 04:57:46]  lfn=log.38207211._000639.job.log.tgz.1
[2024-04-27 04:57:46]  mtime=0
[2024-04-27 04:57:46]  protocol_id=None
[2024-04-27 04:57:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-27 04:57:46]  replicas=None
[2024-04-27 04:57:46]  scope=mc23_13p6TeV
[2024-04-27 04:57:46]  status=None
[2024-04-27 04:57:46]  status_code=0
[2024-04-27 04:57:46]  storage_token=
[2024-04-27 04:57:46]  surl=/scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6185311929/log.38207211._000639.job.log.tgz.1
[2024-04-27 04:57:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/a6/log.38207211._000639.job.log.tgz.1
[2024-04-27 04:57:46]  workdir=None
[2024-04-27 04:57:46] ]
[2024-04-27 04:57:46] 2024-04-27 02:57:21,276 | INFO     | transferring file log.38207211._000639.job.log.tgz.1 from /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6185311929/log.38207211._000639.job.log.tgz.1 to /scratch/b
[2024-04-27 04:57:46] 2024-04-27 02:57:21,276 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6185311929/log.38207211._000639.job.log.tgz.1 /scratch/boinc/var/slot60/slots/0/lo
[2024-04-27 04:57:46] 2024-04-27 02:57:21,294 | INFO     | adding to output.list: log.38207211._000639.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/24/a6/log.38207211._000639.job.log.tg
[2024-04-27 04:57:46] 2024-04-27 02:57:21,295 | INFO     | summary of transferred files:
[2024-04-27 04:57:46] 2024-04-27 02:57:21,295 | INFO     |  -- lfn=log.38207211._000639.job.log.tgz.1, status_code=0, status=transferred
[2024-04-27 04:57:46] 2024-04-27 02:57:21,295 | INFO     | stage-out finished correctly
[2024-04-27 04:57:46] 2024-04-27 02:57:21,348 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-27 04:57:46] 2024-04-27 02:57:21,680 | WARNING  | process 1628149 is no longer using CPU - aborting
[2024-04-27 04:57:46] 2024-04-27 02:57:21,681 | INFO     | will not send any job update
[2024-04-27 04:57:46] 2024-04-27 02:57:22,720 | INFO     | job 6185311929 has state=finished
[2024-04-27 04:57:46] 2024-04-27 02:57:22,720 | INFO     | preparing for final server update for job 6185311929 in state='finished'
[2024-04-27 04:57:46] 2024-04-27 02:57:22,721 | INFO     | this job has now completed (state=finished)
[2024-04-27 04:57:46] 2024-04-27 02:57:22,721 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-27 04:57:46] 2024-04-27 02:57:22,721 | INFO     | job 6185311929 has finished - writing final server update
[2024-04-27 04:57:46] 2024-04-27 02:57:22,721 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4080844/.job.ad'
[2024-04-27 04:57:46] 2024-04-27 02:57:22,722 | INFO     | total number of processed events: 400 (read)
[2024-04-27 04:57:46] 2024-04-27 02:57:22,725 | INFO     | executing command: lscpu
[2024-04-27 04:57:46] 2024-04-27 02:57:22,779 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-04-27 04:57:46] 2024-04-27 02:57:22,779 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-27 04:57:46] 2024-04-27 02:57:22,808 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-27 04:57:46] 2024-04-27 02:57:24,184 | INFO     | monitor loop #639: job 0:6185311929 is in state 'finished'
[2024-04-27 04:57:46] 2024-04-27 02:57:24,184 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,595 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-27 04:57:46] 2024-04-27 02:57:25,596 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6185311929/memory_monitor_summary.json (trf name=prmon)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,596 | INFO     | extracted standard info from prmon json
[2024-04-27 04:57:46] 2024-04-27 02:57:25,596 | INFO     | extracted standard memory fields from prmon json
[2024-04-27 04:57:46] 2024-04-27 02:57:25,597 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-27 04:57:46] 2024-04-27 02:57:25,597 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-27 04:57:46] 2024-04-27 02:57:25,598 | INFO     | fitting pss+swap vs Time
[2024-04-27 04:57:46] 2024-04-27 02:57:25,599 | INFO     | current chi2=3.887738743370593 (change=-0.0075405862062433195 %)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,599 | INFO     | right removable region: 129
[2024-04-27 04:57:46] 2024-04-27 02:57:25,600 | INFO     | current chi2=1.4616234643686115 (change=62.40144269368629 %)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,600 | INFO     | current chi2=0.06898172948488611 (change=95.28047194325218 %)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,601 | INFO     | current chi2=0.01886964651318073 (change=72.64544299760553 %)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,601 | INFO     | current chi2=0.014672853074479896 (change=22.240975398078135 %)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | left removable region: 40
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | current memory leak: 1.86 B/s (using 89 data points, chi2=0.00)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | ..............................
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | . Timing measurements:
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | . get job = 0 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | . initial setup = 1 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | . payload setup = 4 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,602 | INFO     | . stage-in = 0 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,603 | INFO     | . payload execution = 8224 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,603 | INFO     | . stage-out = 0 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,603 | INFO     | . log creation = 0 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,603 | INFO     | ..............................
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | 
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | job summary report
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | --------------------------------------------------
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | PanDA job id: 6185311929
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | task id: 38207211
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | errors: (none)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | pilot state: finished 
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | transexitcode: 0
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | exeerrorcode: 0
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | exeerrordiag: 
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | exitcode: 0
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | exitmsg: OK
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | cpuconsumptiontime: 30345 s
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | nevents: 400
[2024-04-27 04:57:46] 2024-04-27 02:57:25,657 | INFO     | neventsw: 0
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | pid: 1628149
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | pgrp: 1628149
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | corecount: 4
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | event service: False
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | sizes: {0: 2375633, 1: 2375633, 4: 2375867, 11: 2375895, 8233: 2403701, 8234: 2412867, 8239: 2412981}
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | --------------------------------------------------
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | 
[2024-04-27 04:57:46] 2024-04-27 02:57:25,658 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,675 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | job 6185311929 has completed (purged errors)
[2024-04-27 04:57:46] 2024-04-27 02:57:25,676 | INFO     | overall cleanup function is called
[2024-04-27 04:57:46] 2024-04-27 02:57:26,683 | INFO     | --- collectZombieJob: --- 10, [1628149]
[2024-04-27 04:57:46] 2024-04-27 02:57:26,683 | INFO     | zombie collector waiting for pid 1628149
[2024-04-27 04:57:46] 2024-04-27 02:57:26,683 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-27 04:57:46] 2024-04-27 02:57:27,688 | INFO     | collected zombie processes
[2024-04-27 04:57:46] 2024-04-27 02:57:27,688 | INFO     | will now attempt to kill all subprocesses of pid=1628149
[2024-04-27 04:57:46] 2024-04-27 02:57:27,852 | INFO     | process IDs to be killed: [1628149] (in reverse order)
[2024-04-27 04:57:46] 2024-04-27 02:57:27,968 | WARNING  | found no corresponding commands to process id(s)
[2024-04-27 04:57:46] 2024-04-27 02:57:27,968 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-27 04:57:46] 2024-04-27 02:57:27,978 | INFO     | did not find any defunct processes belonging to 1628149
[2024-04-27 04:57:46] 2024-04-27 02:57:27,986 | INFO     | did not find any defunct processes belonging to 1628149
[2024-04-27 04:57:46] 2024-04-27 02:57:27,986 | INFO     | ready for new job
[2024-04-27 04:57:46] 2024-04-27 02:57:27,986 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-27 04:57:46] 2024-04-27 02:57:27,988 | INFO     | *************************************
[2024-04-27 04:57:46] 2024-04-27 02:57:27,988 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-27 04:57:46] 2024-04-27 02:57:27,988 | INFO     | *************************************
[2024-04-27 04:57:46] 2024-04-27 02:57:27,988 | INFO     | 
[2024-04-27 04:57:46] 2024-04-27 02:57:27,992 | INFO     | architecture information:
[2024-04-27 04:57:46] 2024-04-27 02:57:27,993 | INFO     | executing command: cat /etc/os-release
[2024-04-27 04:57:46] 2024-04-27 02:57:28,011 | INFO     | cat /etc/os-release:
[2024-04-27 04:57:46] NAME="CentOS Linux"
[2024-04-27 04:57:46] VERSION="7 (Core)"
[2024-04-27 04:57:46] ID="centos"
[2024-04-27 04:57:46] ID_LIKE="rhel fedora"
[2024-04-27 04:57:46] VERSION_ID="7"
[2024-04-27 04:57:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-27 04:57:46] ANSI_COLOR="0;31"
[2024-04-27 04:57:46] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-27 04:57:46] HOME_URL="https://www.centos.org/"
[2024-04-27 04:57:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-27 04:57:46] 
[2024-04-27 04:57:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-27 04:57:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-27 04:57:46] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-27 04:57:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-27 04:57:46] 
[2024-04-27 04:57:46] 2024-04-27 02:57:28,012 | INFO     | *************************************
[2024-04-27 04:57:46] 2024-04-27 02:57:28,515 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2024-04-27 04:57:46] 2024-04-27 02:57:28,534 | INFO     | sufficient remaining disk space (607366676480 B)
[2024-04-27 04:57:46] 2024-04-27 02:57:28,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-27 04:57:46] 2024-04-27 02:57:28,535 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-27 04:57:46] 2024-04-27 02:57:28,535 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-27 04:57:46] 2024-04-27 02:57:28,535 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-27 04:57:46] 2024-04-27 02:57:28,536 | INFO     | aborting loop
[2024-04-27 04:57:46] 2024-04-27 02:57:28,536 | INFO     | found 0 job(s) in 20 queues
[2024-04-27 04:57:46] 2024-04-27 02:57:28,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-27 04:57:46] 2024-04-27 02:57:28,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-27 04:57:46] 2024-04-27 02:57:28,867 | INFO     | all data control threads have been joined
[2024-04-27 04:57:46] 2024-04-27 02:57:29,147 | INFO     | all payload control threads have been joined
[2024-04-27 04:57:46] 2024-04-27 02:57:29,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-27 04:57:46] 2024-04-27 02:57:29,540 | INFO     | [job] retrieve thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:29,541 | INFO     | [job] job monitor thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:29,578 | INFO     | all job control threads have been joined
[2024-04-27 04:57:46] 2024-04-27 02:57:29,873 | INFO     | [data] control thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:29,956 | INFO     | [data] copytool_in thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:30,020 | INFO     | [payload] execute_payloads thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:30,035 | INFO     | [payload] failed_post thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:30,152 | INFO     | [payload] control thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:30,583 | INFO     | [job] control thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:30,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-27 04:57:46] 2024-04-27 02:57:30,796 | INFO     | [payload] validate_post thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:30,812 | INFO     | [job] validate thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:31,003 | INFO     | [job] create_data_payload thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:31,009 | INFO     | [payload] validate_pre thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:31,364 | INFO     | [data] copytool_out thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:31,671 | INFO     | [job] queue monitor thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:31,909 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-27 04:57:46] 2024-04-27 02:57:35,915 | INFO     | [data] queue_monitor thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:38,616 | INFO     | job.realtimelogging is not enabled
[2024-04-27 04:57:46] 2024-04-27 02:57:39,621 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-27 04:57:46] 2024-04-27 02:57:40,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46954220110912)>', '<ExcThread(monitor, started 46954391344896)>']
[2024-04-27 04:57:46] 2024-04-27 02:57:40,595 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-27 04:57:46] 2024-04-27 02:57:40,595 | INFO     | [monitor] control thread has ended
[2024-04-27 04:57:46] 2024-04-27 02:57:45,305 | INFO     | all workflow threads have been joined
[2024-04-27 04:57:46] 2024-04-27 02:57:45,305 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-27 04:57:46] 2024-04-27 02:57:45,305 | INFO     | traces error code: 0
[2024-04-27 04:57:46] 2024-04-27 02:57:45,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-27 04:57:46] 2024-04-27 02:57:45,401 [wrapper] ==== pilot stdout END ====
[2024-04-27 04:57:46] 2024-04-27 02:57:45,403 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-27 04:57:46] 2024-04-27 02:57:45,405 [wrapper] pilotpid: 1620859
[2024-04-27 04:57:46] 2024-04-27 02:57:45,407 [wrapper] Pilot exit status: 0
[2024-04-27 04:57:46] 2024-04-27 02:57:45,414 [wrapper] pandaids: 6185311929
[2024-04-27 04:57:46] 2024-04-27 02:57:45,473 [wrapper] cleanup: SIGTERM to supervisor_pilot 1961478 1620860
[2024-04-27 04:57:46] 2024-04-27 02:57:45,475 [wrapper] Test setup, not cleaning
[2024-04-27 04:57:46] 2024-04-27 02:57:45,477 [wrapper] ==== wrapper stdout END ====
[2024-04-27 04:57:46] 2024-04-27 02:57:45,479 [wrapper] ==== wrapper stderr END ====
[2024-04-27 04:57:46] 2024-04-27 02:57:45,483 [wrapper] apfmon messages muted
[2024-04-27 04:57:46]  *** Error codes and diagnostics ***
[2024-04-27 04:57:46]     "exeErrorCode": 0,
[2024-04-27 04:57:46]     "exeErrorDiag": "",
[2024-04-27 04:57:46]     "pilotErrorCode": 0,
[2024-04-27 04:57:46]     "pilotErrorDiag": "",
[2024-04-27 04:57:46]  *** Listing of results directory ***
[2024-04-27 04:57:46] total 698888
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc    462745 Apr 24 20:55 pilot3.tar.gz
[2024-04-27 04:57:46] -rwx------ 1 boinc boinc     32211 Apr 24 21:33 runpilot2-wrapper.sh
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc      6720 Apr 24 21:33 queuedata.json
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc       100 Apr 27 02:39 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-27 04:57:46] -rwxr-xr-x 1 boinc boinc      7986 Apr 27 02:39 run_atlas
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc       105 Apr 27 02:39 job.xml
[2024-04-27 04:57:46] -rw-r--r-- 2 boinc boinc 520485892 Apr 27 02:39 EVNT.38207209._000030.pool.root.1
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc      6663 Apr 27 02:39 init_data.xml
[2024-04-27 04:57:46] -rw-r--r-- 2 boinc boinc     17537 Apr 27 02:39 start_atlas.sh
[2024-04-27 04:57:46] drwxrwx--x 2 boinc boinc      4096 Apr 27 02:39 shared
[2024-04-27 04:57:46] -rw-r--r-- 2 boinc boinc    474806 Apr 27 02:39 input.tar.gz
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc         0 Apr 27 02:39 boinc_lockfile
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc      2621 Apr 27 02:39 pandaJob.out
[2024-04-27 04:57:46] -rw------- 1 boinc boinc       424 Apr 27 02:39 setup.sh.local
[2024-04-27 04:57:46] -rw------- 1 boinc boinc    997391 Apr 27 02:39 agis_schedconf.cvmfs.json
[2024-04-27 04:57:46] -rw------- 1 boinc boinc         0 Apr 27 02:39 agis_ddmendpoints.agis.ALL.json
[2024-04-27 04:57:46] -rw------- 1 boinc boinc   1315307 Apr 27 02:39 cric_ddmendpoints.json
[2024-04-27 04:57:46] drwx------ 4 boinc boinc      4096 Apr 27 02:39 pilot3
[2024-04-27 04:57:46] -rw------- 1 boinc boinc 189517654 Apr 27 04:56 HITS.38207211._000639.pool.root.1
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc       530 Apr 27 04:57 boinc_task_state.xml
[2024-04-27 04:57:46] -rw------- 1 boinc boinc        95 Apr 27 04:57 pilot_heartbeat.json
[2024-04-27 04:57:46] -rw------- 1 boinc boinc      1047 Apr 27 04:57 memory_monitor_summary.json
[2024-04-27 04:57:46] -rw------- 1 boinc boinc    286003 Apr 27 04:57 log.38207211._000639.job.log.tgz.1
[2024-04-27 04:57:46] -rw------- 1 boinc boinc      7731 Apr 27 04:57 heartbeat.json
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc      8192 Apr 27 04:57 boinc_mmap_file
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc        27 Apr 27 04:57 wrapper_checkpoint.txt
[2024-04-27 04:57:46] -rw------- 1 boinc boinc      4416 Apr 27 04:57 pilotlog.txt
[2024-04-27 04:57:46] -rw------- 1 boinc boinc    802078 Apr 27 04:57 log.38207211._000639.job.log.1
[2024-04-27 04:57:46] -rw------- 1 boinc boinc       357 Apr 27 04:57 output.list
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc       620 Apr 27 04:57 runtime_log
[2024-04-27 04:57:46] -rw------- 1 boinc boinc   1105920 Apr 27 04:57 result.tar.gz
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc     11409 Apr 27 04:57 runtime_log.err
[2024-04-27 04:57:46] -rw------- 1 boinc boinc       653 Apr 27 04:57 c8lMDmHYxJ5n7Olcko1bjSoqABFKDmABFKDmOtvXDmLPGKDm0oEZEm.diag
[2024-04-27 04:57:46] -rw-r--r-- 1 boinc boinc     20988 Apr 27 04:57 stderr.txt
[2024-04-27 04:57:46] HITS file was successfully produced:
[2024-04-27 04:57:46] -rw------- 1 boinc boinc 189517654 Apr 27 04:56 shared/HITS.pool.root.1
[2024-04-27 04:57:46]  *** Contents of shared directory: ***
[2024-04-27 04:57:46] total 694936
[2024-04-27 04:57:46] -rw-r--r-- 2 boinc boinc 520485892 Apr 27 02:39 ATLAS.root_0
[2024-04-27 04:57:46] -rw-r--r-- 2 boinc boinc     17537 Apr 27 02:39 start_atlas.sh
[2024-04-27 04:57:46] -rw-r--r-- 2 boinc boinc    474806 Apr 27 02:39 input.tar.gz
[2024-04-27 04:57:46] -rw------- 1 boinc boinc 189517654 Apr 27 04:56 HITS.pool.root.1
[2024-04-27 04:57:46] -rw------- 1 boinc boinc   1105920 Apr 27 04:57 result.tar.gz
04:57:47 (1616518): run_atlas exited; CPU time 30174.282678
04:57:47 (1616518): called boinc_finish(0)

</stderr_txt>
]]>

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