Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:33:34 (383198): wrapper (7.7.26015): starting
16:33:34 (383198): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 16:33:34] Arguments: --nthreads 4
[2024-04-26 16:33:34] Threads: 4
[2024-04-26 16:33:34] Checking for CVMFS
[2024-04-26 16:33:34] No cvmfs_config command found, will try listing directly
[2024-04-26 16:33:34] CVMFS is ok
[2024-04-26 16:33:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 16:33:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 16:33:34] Further information can be found at the LHC@home message board.
[2024-04-26 16:33:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 16:33:34] Checking for apptainer binary...
[2024-04-26 16:33:34] which: no apptainer in ((null))
[2024-04-26 16:33:34] apptainer is not installed, using version from CVMFS
[2024-04-26 16:33:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 16:33:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2024-04-26 16:33:35] apptainer works
[2024-04-26 16:33:35] Set ATHENA_PROC_NUMBER=4
[2024-04-26 16:33:35] Set ATHENA_CORE_NUMBER=4
[2024-04-26 16:33:35] Starting ATLAS job with PandaID=6184929584
[2024-04-26 16:33:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-26 19:13:13]  *** The last 200 lines of the pilot log: ***
[2024-04-26 19:13:13]  direct_access_lan=False
[2024-04-26 19:13:13]  direct_access_wan=False
[2024-04-26 19:13:13]  domain=
[2024-04-26 19:13:13]  filesize=303223
[2024-04-26 19:13:13]  filetype=log
[2024-04-26 19:13:13]  guid=7a74c4f4-bef0-4090-8639-e631d56d08c0
[2024-04-26 19:13:13]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-26 19:13:13]  is_tar=False
[2024-04-26 19:13:13]  lfn=log.38207243._001106.job.log.tgz.1
[2024-04-26 19:13:13]  mtime=0
[2024-04-26 19:13:13]  protocol_id=None
[2024-04-26 19:13:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-26 19:13:13]  replicas=None
[2024-04-26 19:13:13]  scope=mc23_13p6TeV
[2024-04-26 19:13:13]  status=None
[2024-04-26 19:13:13]  status_code=0
[2024-04-26 19:13:13]  storage_token=
[2024-04-26 19:13:13]  surl=/scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184929584/log.38207243._001106.job.log.tgz.1
[2024-04-26 19:13:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/b5/log.38207243._001106.job.log.tgz.1
[2024-04-26 19:13:13]  workdir=None
[2024-04-26 19:13:13] ]
[2024-04-26 19:13:13] 2024-04-26 17:12:49,872 | INFO     | transferring file log.38207243._001106.job.log.tgz.1 from /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184929584/log.38207243._001106.job.log.tgz.1 to /scratch/
[2024-04-26 19:13:13] 2024-04-26 17:12:49,872 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184929584/log.38207243._001106.job.log.tgz.1 /scratch/boinc/var/slot128/slots/0/
[2024-04-26 19:13:13] 2024-04-26 17:12:49,898 | INFO     | adding to output.list: log.38207243._001106.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/99/b5/log.38207243._001106.job.log.tg
[2024-04-26 19:13:13] 2024-04-26 17:12:49,898 | INFO     | summary of transferred files:
[2024-04-26 19:13:13] 2024-04-26 17:12:49,898 | INFO     |  -- lfn=log.38207243._001106.job.log.tgz.1, status_code=0, status=transferred
[2024-04-26 19:13:13] 2024-04-26 17:12:49,899 | INFO     | stage-out finished correctly
[2024-04-26 19:13:13] 2024-04-26 17:12:51,815 | WARNING  | process 397806 is no longer using CPU - aborting
[2024-04-26 19:13:13] 2024-04-26 17:12:51,815 | INFO     | will not send any job update
[2024-04-26 19:13:13] 2024-04-26 17:12:52,621 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-26 19:13:13] 2024-04-26 17:12:52,721 | INFO     | job 6184929584 has state=finished
[2024-04-26 19:13:13] 2024-04-26 17:12:52,721 | INFO     | preparing for final server update for job 6184929584 in state='finished'
[2024-04-26 19:13:13] 2024-04-26 17:12:52,722 | INFO     | this job has now completed (state=finished)
[2024-04-26 19:13:13] 2024-04-26 17:12:52,722 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-26 19:13:13] 2024-04-26 17:12:52,722 | INFO     | job 6184929584 has finished - writing final server update
[2024-04-26 19:13:13] 2024-04-26 17:12:52,722 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1645594/.job.ad'
[2024-04-26 19:13:13] 2024-04-26 17:12:52,723 | INFO     | total number of processed events: 400 (read)
[2024-04-26 19:13:13] 2024-04-26 17:12:52,730 | INFO     | executing command: lscpu
[2024-04-26 19:13:13] 2024-04-26 17:12:52,787 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-04-26 19:13:13] 2024-04-26 17:12:52,787 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-26 19:13:13] 2024-04-26 17:12:52,836 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-26 19:13:13] 2024-04-26 17:12:54,317 | INFO     | monitor loop #724: job 0:6184929584 is in state 'finished'
[2024-04-26 19:13:13] 2024-04-26 17:12:54,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-26 19:13:13] 2024-04-26 17:12:56,822 | INFO     | monitor loop #725: job 0:6184929584 is in state 'finished'
[2024-04-26 19:13:13] 2024-04-26 17:12:56,823 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,173 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-26 19:13:13] 2024-04-26 17:12:57,173 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184929584/memory_monitor_summary.json (trf name=prmon)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,175 | INFO     | extracted standard info from prmon json
[2024-04-26 19:13:13] 2024-04-26 17:12:57,175 | INFO     | extracted standard memory fields from prmon json
[2024-04-26 19:13:13] 2024-04-26 17:12:57,175 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-26 19:13:13] 2024-04-26 17:12:57,175 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-26 19:13:13] 2024-04-26 17:12:57,178 | INFO     | fitting pss+swap vs Time
[2024-04-26 19:13:13] 2024-04-26 17:12:57,180 | INFO     | current chi2=4.167359272638515 (change=0.0444577833252143 %)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,180 | INFO     | right removable region: 150
[2024-04-26 19:13:13] 2024-04-26 17:12:57,181 | INFO     | current chi2=1.5919123116297809 (change=61.81743692820378 %)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,183 | INFO     | current chi2=0.056966448049431836 (change=96.42150841894612 %)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,184 | INFO     | current chi2=0.0010371083952405611 (change=98.17943994973913 %)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,184 | INFO     | current chi2=0.0009551133861887312 (change=7.906117569592216 %)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,184 | INFO     | left removable region: 40
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | current memory leak: 1.17 B/s (using 110 data points, chi2=0.00)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | ..............................
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | . Timing measurements:
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | . get job = 0 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | . initial setup = 1 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | . payload setup = 7 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | . stage-in = 0 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | . payload execution = 9512 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,185 | INFO     | . stage-out = 0 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,186 | INFO     | . log creation = 0 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,186 | INFO     | ..............................
[2024-04-26 19:13:13] 2024-04-26 17:12:57,249 | INFO     | 
[2024-04-26 19:13:13] 2024-04-26 17:12:57,249 | INFO     | job summary report
[2024-04-26 19:13:13] 2024-04-26 17:12:57,249 | INFO     | --------------------------------------------------
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | PanDA job id: 6184929584
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | task id: 38207243
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | errors: (none)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | pilot state: finished 
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | transexitcode: 0
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | exeerrorcode: 0
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | exeerrordiag: 
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | exitcode: 0
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | exitmsg: OK
[2024-04-26 19:13:13] 2024-04-26 17:12:57,250 | INFO     | cpuconsumptiontime: 35344 s
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | nevents: 400
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | neventsw: 0
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | pid: 397806
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | pgrp: 397806
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | corecount: 4
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | event service: False
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | sizes: {0: 2375665, 6: 2375871, 11: 2375899, 9523: 2404285, 9525: 2413269, 9528: 2413325, 9532: 2413623}
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | --------------------------------------------------
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | 
[2024-04-26 19:13:13] 2024-04-26 17:12:57,251 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2024-04-26 19:13:13] 2024-04-26 17:12:57,280 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,280 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,281 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | job 6184929584 has completed (purged errors)
[2024-04-26 19:13:13] 2024-04-26 17:12:57,282 | INFO     | overall cleanup function is called
[2024-04-26 19:13:13] 2024-04-26 17:12:58,290 | INFO     | --- collectZombieJob: --- 10, [397806]
[2024-04-26 19:13:13] 2024-04-26 17:12:58,290 | INFO     | zombie collector waiting for pid 397806
[2024-04-26 19:13:13] 2024-04-26 17:12:58,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-26 19:13:13] 2024-04-26 17:12:59,295 | INFO     | collected zombie processes
[2024-04-26 19:13:13] 2024-04-26 17:12:59,295 | INFO     | will now attempt to kill all subprocesses of pid=397806
[2024-04-26 19:13:13] 2024-04-26 17:12:59,558 | INFO     | process IDs to be killed: [397806] (in reverse order)
[2024-04-26 19:13:13] 2024-04-26 17:12:59,716 | WARNING  | found no corresponding commands to process id(s)
[2024-04-26 19:13:13] 2024-04-26 17:12:59,716 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-26 19:13:13] 2024-04-26 17:12:59,729 | INFO     | did not find any defunct processes belonging to 397806
[2024-04-26 19:13:13] 2024-04-26 17:12:59,738 | INFO     | did not find any defunct processes belonging to 397806
[2024-04-26 19:13:13] 2024-04-26 17:12:59,738 | INFO     | ready for new job
[2024-04-26 19:13:13] 2024-04-26 17:12:59,738 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-26 19:13:13] 2024-04-26 17:12:59,739 | INFO     | *************************************
[2024-04-26 19:13:13] 2024-04-26 17:12:59,739 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-26 19:13:13] 2024-04-26 17:12:59,739 | INFO     | *************************************
[2024-04-26 19:13:13] 2024-04-26 17:12:59,739 | INFO     | 
[2024-04-26 19:13:13] 2024-04-26 17:12:59,744 | INFO     | architecture information:
[2024-04-26 19:13:13] 2024-04-26 17:12:59,744 | INFO     | executing command: cat /etc/os-release
[2024-04-26 19:13:13] 2024-04-26 17:12:59,767 | INFO     | cat /etc/os-release:
[2024-04-26 19:13:13] NAME="CentOS Linux"
[2024-04-26 19:13:13] VERSION="7 (Core)"
[2024-04-26 19:13:13] ID="centos"
[2024-04-26 19:13:13] ID_LIKE="rhel fedora"
[2024-04-26 19:13:13] VERSION_ID="7"
[2024-04-26 19:13:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-26 19:13:13] ANSI_COLOR="0;31"
[2024-04-26 19:13:13] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-26 19:13:13] HOME_URL="https://www.centos.org/"
[2024-04-26 19:13:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-26 19:13:13] 
[2024-04-26 19:13:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-26 19:13:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-26 19:13:13] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-26 19:13:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-26 19:13:13] 
[2024-04-26 19:13:13] 2024-04-26 17:12:59,768 | INFO     | *************************************
[2024-04-26 19:13:13] 2024-04-26 17:13:00,270 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2024-04-26 19:13:13] 2024-04-26 17:13:00,293 | INFO     | sufficient remaining disk space (3055466577920 B)
[2024-04-26 19:13:13] 2024-04-26 17:13:00,294 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-26 19:13:13] 2024-04-26 17:13:00,294 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-26 19:13:13] 2024-04-26 17:13:00,331 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-26 19:13:13] 2024-04-26 17:13:00,331 | INFO     | aborting loop
[2024-04-26 19:13:13] 2024-04-26 17:13:00,369 | INFO     | all data control threads have been joined
[2024-04-26 19:13:13] 2024-04-26 17:13:00,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-26 19:13:13] 2024-04-26 17:13:00,786 | INFO     | all job control threads have been joined
[2024-04-26 19:13:13] 2024-04-26 17:13:01,068 | INFO     | all payload control threads have been joined
[2024-04-26 19:13:13] 2024-04-26 17:13:01,256 | INFO     | found 0 job(s) in 20 queues
[2024-04-26 19:13:13] 2024-04-26 17:13:01,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-26 19:13:13] 2024-04-26 17:13:01,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-26 19:13:13] 2024-04-26 17:13:01,299 | INFO     | [job] retrieve thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:01,327 | INFO     | [payload] validate_pre thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:01,335 | INFO     | [job] job monitor thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:01,374 | INFO     | [data] control thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:01,429 | INFO     | [job] create_data_payload thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:01,794 | INFO     | [job] control thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:01,966 | INFO     | [payload] failed_post thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:02,073 | INFO     | [payload] control thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:02,099 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:02,132 | INFO     | [payload] validate_post thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:02,193 | INFO     | [job] validate thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:02,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-26 19:13:13] 2024-04-26 17:13:02,538 | INFO     | [data] copytool_out thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:02,608 | INFO     | [data] copytool_in thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:02,713 | INFO     | [payload] execute_payloads thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:03,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-26 19:13:13] 2024-04-26 17:13:03,263 | INFO     | [job] queue monitor thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:07,243 | INFO     | [data] queue_monitor thread has finished
[2024-04-26 19:13:13] 2024-04-26 17:13:07,611 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47111292216384)>', '<ExcThread(monitor, started 47111461349120)>']
[2024-04-26 19:13:13] 2024-04-26 17:13:08,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-26 19:13:13] 2024-04-26 17:13:08,292 | INFO     | [monitor] control thread has ended
[2024-04-26 19:13:13] 2024-04-26 17:13:12,637 | INFO     | all workflow threads have been joined
[2024-04-26 19:13:13] 2024-04-26 17:13:12,637 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-26 19:13:13] 2024-04-26 17:13:12,638 | INFO     | traces error code: 0
[2024-04-26 19:13:13] 2024-04-26 17:13:12,638 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-26 19:13:13] 2024-04-26 17:13:12,744 [wrapper] ==== pilot stdout END ====
[2024-04-26 19:13:13] 2024-04-26 17:13:12,746 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-26 19:13:13] 2024-04-26 17:13:12,748 [wrapper] pilotpid: 390208
[2024-04-26 19:13:13] 2024-04-26 17:13:12,750 [wrapper] Pilot exit status: 0
[2024-04-26 19:13:13] 2024-04-26 17:13:12,759 [wrapper] pandaids: 6184929584
[2024-04-26 19:13:13] 2024-04-26 17:13:12,846 [wrapper] cleanup: SIGTERM to supervisor_pilot 1350105 390209
[2024-04-26 19:13:13] 2024-04-26 17:13:12,848 [wrapper] Test setup, not cleaning
[2024-04-26 19:13:13] 2024-04-26 17:13:12,850 [wrapper] ==== wrapper stdout END ====
[2024-04-26 19:13:13] 2024-04-26 17:13:12,852 [wrapper] ==== wrapper stderr END ====
[2024-04-26 19:13:13] 2024-04-26 17:13:12,858 [wrapper] apfmon messages muted
[2024-04-26 19:13:13]  *** Error codes and diagnostics ***
[2024-04-26 19:13:13]     "exeErrorCode": 0,
[2024-04-26 19:13:13]     "exeErrorDiag": "",
[2024-04-26 19:13:13]     "pilotErrorCode": 0,
[2024-04-26 19:13:13]     "pilotErrorDiag": "",
[2024-04-26 19:13:13]  *** Listing of results directory ***
[2024-04-26 19:13:13] total 705868
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc    462745 Apr 24 09:58 pilot3.tar.gz
[2024-04-26 19:13:13] -rwx------ 1 boinc boinc     32211 Apr 24 10:08 runpilot2-wrapper.sh
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc      6720 Apr 24 10:08 queuedata.json
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc       100 Apr 26 16:33 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-26 19:13:13] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 16:33 run_atlas
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc       105 Apr 26 16:33 job.xml
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc      6646 Apr 26 16:33 init_data.xml
[2024-04-26 19:13:13] -rw-r--r-- 2 boinc boinc 521031752 Apr 26 16:33 EVNT.38207241._000045.pool.root.1
[2024-04-26 19:13:13] -rw-r--r-- 2 boinc boinc     17537 Apr 26 16:33 start_atlas.sh
[2024-04-26 19:13:13] drwxrwx--x 2 boinc boinc      4096 Apr 26 16:33 shared
[2024-04-26 19:13:13] -rw-r--r-- 2 boinc boinc    474812 Apr 26 16:33 input.tar.gz
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc         0 Apr 26 16:33 boinc_lockfile
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc      2614 Apr 26 16:33 pandaJob.out
[2024-04-26 19:13:13] -rw------- 1 boinc boinc       424 Apr 26 16:33 setup.sh.local
[2024-04-26 19:13:13] -rw------- 1 boinc boinc    997829 Apr 26 16:33 agis_schedconf.cvmfs.json
[2024-04-26 19:13:13] -rw------- 1 boinc boinc         0 Apr 26 16:33 agis_ddmendpoints.agis.ALL.json
[2024-04-26 19:13:13] -rw------- 1 boinc boinc   1315307 Apr 26 16:33 cric_ddmendpoints.json
[2024-04-26 19:13:13] drwx------ 4 boinc boinc      4096 Apr 26 16:33 pilot3
[2024-04-26 19:13:13] -rw------- 1 boinc boinc        95 Apr 26 19:12 pilot_heartbeat.json
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc       530 Apr 26 19:12 boinc_task_state.xml
[2024-04-26 19:13:13] -rw------- 1 boinc boinc 195863776 Apr 26 19:12 HITS.38207243._001106.pool.root.1
[2024-04-26 19:13:13] -rw------- 1 boinc boinc      1038 Apr 26 19:12 memory_monitor_summary.json
[2024-04-26 19:13:13] -rw------- 1 boinc boinc    303223 Apr 26 19:12 log.38207243._001106.job.log.tgz.1
[2024-04-26 19:13:13] -rw------- 1 boinc boinc      7686 Apr 26 19:12 heartbeat.json
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc      8192 Apr 26 19:13 boinc_mmap_file
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc        27 Apr 26 19:13 wrapper_checkpoint.txt
[2024-04-26 19:13:13] -rw------- 1 boinc boinc      4223 Apr 26 19:13 pilotlog.txt
[2024-04-26 19:13:13] -rw------- 1 boinc boinc    907108 Apr 26 19:13 log.38207243._001106.job.log.1
[2024-04-26 19:13:13] -rw------- 1 boinc boinc       357 Apr 26 19:13 output.list
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc       620 Apr 26 19:13 runtime_log
[2024-04-26 19:13:13] -rw------- 1 boinc boinc   1228800 Apr 26 19:13 result.tar.gz
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc     11428 Apr 26 19:13 runtime_log.err
[2024-04-26 19:13:13] -rw------- 1 boinc boinc       653 Apr 26 19:13 EnMKDmNrmJ5n9Rq4apoT9bVoABFKDmABFKDmtztZDmkFNKDmHCk0fm.diag
[2024-04-26 19:13:13] -rw-r--r-- 1 boinc boinc     21003 Apr 26 19:13 stderr.txt
[2024-04-26 19:13:13] HITS file was successfully produced:
[2024-04-26 19:13:13] -rw------- 1 boinc boinc 195863776 Apr 26 19:12 shared/HITS.pool.root.1
[2024-04-26 19:13:13]  *** Contents of shared directory: ***
[2024-04-26 19:13:13] total 701792
[2024-04-26 19:13:13] -rw-r--r-- 2 boinc boinc 521031752 Apr 26 16:33 ATLAS.root_0
[2024-04-26 19:13:13] -rw-r--r-- 2 boinc boinc     17537 Apr 26 16:33 start_atlas.sh
[2024-04-26 19:13:13] -rw-r--r-- 2 boinc boinc    474812 Apr 26 16:33 input.tar.gz
[2024-04-26 19:13:13] -rw------- 1 boinc boinc 195863776 Apr 26 19:12 HITS.pool.root.1
[2024-04-26 19:13:13] -rw------- 1 boinc boinc   1228800 Apr 26 19:13 result.tar.gz
19:13:14 (383198): run_atlas exited; CPU time 35112.156857
19:13:14 (383198): called boinc_finish(0)

</stderr_txt>
]]>

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