Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
2024-04-26 04:41:36 (3864): Detected: vboxwrapper 26206
2024-04-26 04:41:36 (3864): Detected: BOINC client v7.24.1
2024-04-26 04:41:40 (3864): Detected: VirtualBox VboxManage Interface (Version: 6.1.22)
2024-04-26 04:41:40 (3864): Successfully copied 'init_data.xml' to the shared directory.
2024-04-26 04:41:41 (3864): Create VM. (boinc_defe8e4b7a28ba84, slot#3)
2024-04-26 04:41:42 (3864): Setting Memory Size for VM. (4200MB)
2024-04-26 04:41:42 (3864): Setting CPU Count for VM. (2)
2024-04-26 04:41:43 (3864): Setting Chipset Options for VM.
2024-04-26 04:41:44 (3864): Setting Graphics Controller Options for VM.
2024-04-26 04:41:44 (3864): Setting Boot Options for VM.
2024-04-26 04:41:45 (3864): Setting Network Configuration for NAT.
2024-04-26 04:41:45 (3864): Enabling VM Network Access.
2024-04-26 04:41:46 (3864): Disabling USB Support for VM.
2024-04-26 04:41:46 (3864): Disabling COM Port Support for VM.
2024-04-26 04:41:46 (3864): Disabling LPT Port Support for VM.
2024-04-26 04:41:47 (3864): Disabling Audio Support for VM.
2024-04-26 04:41:47 (3864): Disabling Clipboard Support for VM.
2024-04-26 04:41:48 (3864): Disabling Drag and Drop Support for VM.
2024-04-26 04:41:48 (3864): Adding storage controller(s) to VM.
2024-04-26 04:41:49 (3864): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-04-26 04:41:51 (3864): Adding VirtualBox Guest Additions to VM.
2024-04-26 04:41:51 (3864): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-04-26 04:41:52 (3864): forwarding host port 53085 to guest port 80
2024-04-26 04:41:52 (3864): Enabling remote desktop for VM.
2024-04-26 04:41:53 (3864): Required extension pack not installed, remote desktop not enabled.
2024-04-26 04:41:53 (3864): Enabling shared directory for VM.
2024-04-26 04:41:53 (3864): Starting VM using VBoxManage interface. (boinc_defe8e4b7a28ba84, slot#3)
2024-04-26 04:42:05 (3864): Successfully started VM. (PID = '5756')
2024-04-26 04:42:05 (3864): Reporting VM Process ID to BOINC.
2024-04-26 04:42:05 (3864): Guest Log: BIOS: VirtualBox 6.1.22
2024-04-26 04:42:05 (3864): Guest Log: CPUID EDX: 0x178bfbff
2024-04-26 04:42:05 (3864): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-04-26 04:42:05 (3864): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-04-26 04:42:05 (3864): VM state change detected. (old = 'poweredoff', new = 'running')
2024-04-26 04:42:05 (3864): Detected: Web Application Enabled (http://localhost:53085)
2024-04-26 04:42:05 (3864): Preference change detected
2024-04-26 04:42:05 (3864): Setting CPU throttle for VM. (100%)
2024-04-26 04:42:05 (3864): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2024-04-26 04:42:07 (3864): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-04-26 04:42:07 (3864): Guest Log: BIOS: Booting from Hard Disk...
2024-04-26 04:42:38 (3864): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-04-26 04:42:38 (3864): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-04-26 04:42:38 (3864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-04-26 04:42:54 (3864): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-04-26 04:42:54 (3864): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-04-26 04:43:31 (3864): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.002044 main     Log opened 2024-04-26T04:43:28.660079000Z
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.002811 main     OS Product: Linux
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.002989 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.003102 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.003365 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.003366 main     Process ID: 1252
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.003367 main     Package type: LINUX_64BITS_GENERIC
2024-04-26 04:43:31 (3864): Guest Log: 00:00:00.005150 main     5.2.32 r132073 started. Verbose level = 0
2024-04-26 04:43:32 (3864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-04-26 04:43:32 (3864): Guest Log: [INFO] Mounting shared directory
2024-04-26 04:43:32 (3864): Guest Log: [INFO] Checking for init_data.xml
2024-04-26 04:43:41 (3864): Guest Log: 00:00:10.046918 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 619 304 000ns (GuestNow=1 714 099 421 066 583 000 ns GuestLast=1 714 106 608 685 887 000 ns fSetTimeLastLoop=true )
2024-04-26 04:44:17 (3864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-04-26 04:44:17 (3864): Guest Log: [INFO] Detected branch: prod
2024-04-26 04:44:22 (3864): Guest Log: This is the prod version of the ATLAS job wrapper
2024-04-26 04:44:22 (3864): Guest Log: Copying input files
2024-04-26 04:44:33 (3864): Guest Log: Copied input files into RunAtlas.
2024-04-26 04:44:33 (3864): Guest Log: This VM did not configure a local http proxy via BOINC.
2024-04-26 04:44:33 (3864): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2024-04-26 04:44:33 (3864): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2024-04-26 04:44:33 (3864): Guest Log: Further information can be found at the LHC@home message board.
2024-04-26 04:45:42 (3864): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-04-26 04:45:47 (3864): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-04-26 04:45:47 (3864): Guest Log: 2.6.3.0 1542 1 32100 132047 3 1 3116988 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2024-04-26 04:45:53 (3864): Guest Log: copied the webapp to /var/www
2024-04-26 04:45:54 (3864): Guest Log: ATHENA_PROC_NUMBER=2
2024-04-26 04:45:54 (3864): Guest Log: ATHENA_CORE_NUMBER=2
2024-04-26 04:45:57 (3864): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-04-26 04:45:57 (3864): Guest Log:  *** Starting ATLAS job. (PandaID=6185011676 taskID=38204263) ***
2024-04-26 05:00:11 (3864): Guest Log:  *** Job finished ***
2024-04-26 05:00:11 (3864): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 02:59:57,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 02:59:58,278 | INFO     | [data] copytool_out thread has finished
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:01,434 | INFO     | [data] queue_monitor thread has finished
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:02,507 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140645186008896)>', '<ExcThread(monitor, started 140644374787840)>']
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:02,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:02,799 | INFO     | [monitor] control thread has ended
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:07,562 | INFO     | all workflow threads have been joined
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:07,563 | INFO     | end of generic workflow (traces error code: 0)
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:07,566 | INFO     | traces error code: 0
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:07,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:07,975 [wrapper] ==== pilot stdout END ====
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,009 [wrapper] ==== wrapper stdout RESUME ====
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,041 [wrapper] pilotpid: 6453
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,073 [wrapper] Pilot exit status: 0
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,285 [wrapper] pandaids: 6185011676
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,415 [wrapper] cleanup: SIGTERM to supervisor_pilot  6458 6454
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,451 [wrapper] Test setup, not cleaning
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,482 [wrapper] ==== wrapper stdout END ====
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,514 [wrapper] ==== wrapper stderr END ====
2024-04-26 05:00:11 (3864): Guest Log: 2024-04-26 03:00:08,580 [wrapper] apfmon messages muted
2024-04-26 05:00:11 (3864): Guest Log:  *** Error codes and diagnostics ***
2024-04-26 05:00:11 (3864): Guest Log:     "exeErrorCode": 65,
2024-04-26 05:00:11 (3864): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2024-04-26 05:00:11 (3864): Guest Log:     "pilotErrorCode": 1305,
2024-04-26 05:00:11 (3864): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-04-26 02:59:02,598 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2024-04-26 05:00:11 (3864): Guest Log:  *** Listing of results directory ***
2024-04-26 05:00:11 (3864): Guest Log: total 3612
2024-04-26 05:00:11 (3864): Guest Log: -rw-r--r--. 1 atlas atlas  462745 Apr 24 10:45 pilot3.tar.gz
2024-04-26 05:00:11 (3864): Guest Log: -rwx------. 1 atlas atlas   32211 Apr 24 11:00 runpilot2-wrapper.sh
2024-04-26 05:00:11 (3864): Guest Log: -rw-r--r--. 1 atlas atlas    6720 Apr 24 11:00 queuedata.json
2024-04-26 05:00:11 (3864): Guest Log: -rwxr-xr-x. 1 atlas atlas    6224 Apr 26 02:44 init_data.xml
2024-04-26 05:00:11 (3864): Guest Log: -rwxr-xr-x. 1 atlas atlas  474814 Apr 26 02:44 input.tar.gz
2024-04-26 05:00:11 (3864): Guest Log: -rwxr-xr-x. 1 atlas atlas   17537 Apr 26 02:44 start_atlas.sh
2024-04-26 05:00:11 (3864): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Apr 26 02:44 EVNT.38204261._000199.pool.root.1 -> /data/./ATLAS.root_0
2024-04-26 05:00:11 (3864): Guest Log: -rw-r--r--. 1 atlas atlas    2650 Apr 26 02:45 pandaJob.out
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas     424 Apr 26 02:46 setup.sh.local
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas  993582 Apr 26 02:49 agis_schedconf.cvmfs.json
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas       0 Apr 26 02:50 agis_ddmendpoints.agis.ALL.json
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas 1315307 Apr 26 02:50 cric_ddmendpoints.json
2024-04-26 05:00:11 (3864): Guest Log: drwx------. 4 atlas atlas    4096 Apr 26 02:50 pilot3
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas      95 Apr 26 02:59 pilot_heartbeat.json
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas    1021 Apr 26 02:59 memory_monitor_summary.json
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas   45684 Apr 26 02:59 log.38204263._005260.job.log.tgz.1
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas    8628 Apr 26 02:59 heartbeat.json
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas    4394 Apr 26 03:00 pilotlog.txt
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas   96896 Apr 26 03:00 log.38204263._005260.job.log.1
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas     188 Apr 26 03:00 output.list
2024-04-26 05:00:11 (3864): Guest Log: -rw-r--r--. 1 atlas atlas     620 Apr 26 03:00 runtime_log
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas  163840 Apr 26 03:00 result.tar.gz
2024-04-26 05:00:11 (3864): Guest Log: -rw-------. 1 atlas atlas     629 Apr 26 03:00 QoYMDmFXpJ5nsSi4apGgGQJmABFKDmABFKDmRLXKDmwzQKDmAZhGMn.diag
2024-04-26 05:00:11 (3864): Guest Log: -rw-r--r--. 1 atlas atlas   10762 Apr 26 03:00 runtime_log.err
2024-04-26 05:00:11 (3864): Guest Log: Looking for outputfile HITS.38204263._005260.pool.root.1
2024-04-26 05:00:11 (3864): Guest Log: No HITS file was produced
2024-04-26 05:00:11 (3864): Guest Log: Successfully finished the ATLAS job!
2024-04-26 05:00:11 (3864): Guest Log: Copying the results back to the shared directory!
2024-04-26 05:00:11 (3864): Guest Log:  *** Contents of shared directory: ***
2024-04-26 05:00:12 (3864): Guest Log: total 513228
2024-04-26 05:00:12 (3864): Guest Log: -rwxrwxrwx. 1 root root 524874198 Apr 26 02:41 ATLAS.root_0
2024-04-26 05:00:12 (3864): Guest Log: -rwxrwxrwx. 1 root root      6224 Apr 26 02:41 init_data.xml
2024-04-26 05:00:12 (3864): Guest Log: -rwxrwxrwx. 1 root root    474814 Apr 24 14:18 input.tar.gz
2024-04-26 05:00:12 (3864): Guest Log: -rwxrwxrwx. 1 root root    163840 Apr 26 03:00 result.tar.gz
2024-04-26 05:00:12 (3864): Guest Log: -rwxrwxrwx. 1 root root     17537 Apr 24 14:18 start_atlas.sh
2024-04-26 05:00:12 (3864): Guest Log:  *** Success! Shutting down the machine. ***
2024-04-26 05:00:12 (3864): VM Completion File Detected.
2024-04-26 05:00:12 (3864): Powering off VM.
2024-04-26 05:00:14 (3864): Successfully stopped VM.
2024-04-26 05:00:14 (3864): Deregistering VM. (boinc_defe8e4b7a28ba84, slot#3)
2024-04-26 05:00:14 (3864): Removing network bandwidth throttle group from VM.
2024-04-26 05:00:14 (3864): Removing VM from VirtualBox.
05:00:20 (3864): called boinc_finish(0)

</stderr_txt>
]]>

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