Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:44:29 (3449257): wrapper (7.7.26015): starting
02:44:29 (3449257): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 02:44:29] Arguments: --nthreads 4
[2024-04-26 02:44:29] Threads: 4
[2024-04-26 02:44:29] Checking for CVMFS
[2024-04-26 02:44:29] No cvmfs_config command found, will try listing directly
[2024-04-26 02:44:29] CVMFS is ok
[2024-04-26 02:44:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 02:44:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 02:44:29] Further information can be found at the LHC@home message board.
[2024-04-26 02:44:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 02:44:29] Checking for apptainer binary...
[2024-04-26 02:44:29] which: no apptainer in ((null))
[2024-04-26 02:44:29] apptainer is not installed, using version from CVMFS
[2024-04-26 02:44:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 02:44:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot128/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2024-04-26 02:44:30] apptainer works
[2024-04-26 02:44:30] Set ATHENA_PROC_NUMBER=4
[2024-04-26 02:44:30] Set ATHENA_CORE_NUMBER=4
[2024-04-26 02:44:30] Starting ATLAS job with PandaID=6184532746
[2024-04-26 02:44:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot128/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-26 05:25:27]  *** The last 200 lines of the pilot log: ***
[2024-04-26 05:25:27]  ddmendpoint=NDGF-T1_DATADISK
[2024-04-26 05:25:27]  direct_access_lan=False
[2024-04-26 05:25:27]  direct_access_wan=False
[2024-04-26 05:25:27]  domain=
[2024-04-26 05:25:27]  filesize=287183
[2024-04-26 05:25:27]  filetype=log
[2024-04-26 05:25:27]  guid=1dc61316-871c-4bcb-ab03-deb5441c5e66
[2024-04-26 05:25:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-26 05:25:27]  is_tar=False
[2024-04-26 05:25:27]  lfn=log.38204311._002236.job.log.tgz.1
[2024-04-26 05:25:27]  mtime=0
[2024-04-26 05:25:27]  protocol_id=None
[2024-04-26 05:25:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-26 05:25:27]  replicas=None
[2024-04-26 05:25:27]  scope=mc23_13p6TeV
[2024-04-26 05:25:27]  status=None
[2024-04-26 05:25:27]  status_code=0
[2024-04-26 05:25:27]  storage_token=
[2024-04-26 05:25:27]  surl=/scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184532746/log.38204311._002236.job.log.tgz.1
[2024-04-26 05:25:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/ac/log.38204311._002236.job.log.tgz.1
[2024-04-26 05:25:27]  workdir=None
[2024-04-26 05:25:27] ]
[2024-04-26 05:25:27] 2024-04-26 03:25:00,203 | INFO     | transferring file log.38204311._002236.job.log.tgz.1 from /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184532746/log.38204311._002236.job.log.tgz.1 to /scratch/
[2024-04-26 05:25:27] 2024-04-26 03:25:00,203 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184532746/log.38204311._002236.job.log.tgz.1 /scratch/boinc/var/slot128/slots/0/
[2024-04-26 05:25:27] 2024-04-26 03:25:00,229 | INFO     | adding to output.list: log.38204311._002236.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/80/ac/log.38204311._002236.job.log.tg
[2024-04-26 05:25:27] 2024-04-26 03:25:00,230 | INFO     | summary of transferred files:
[2024-04-26 05:25:27] 2024-04-26 03:25:00,230 | INFO     |  -- lfn=log.38204311._002236.job.log.tgz.1, status_code=0, status=transferred
[2024-04-26 05:25:27] 2024-04-26 03:25:00,230 | INFO     | stage-out finished correctly
[2024-04-26 05:25:27] 2024-04-26 03:25:00,299 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-26 05:25:27] 2024-04-26 03:25:01,193 | INFO     | monitor loop #734: job 0:6184532746 is in state 'finished'
[2024-04-26 05:25:27] 2024-04-26 03:25:01,194 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-26 05:25:27] 2024-04-26 03:25:02,277 | INFO     | job 6184532746 has state=finished
[2024-04-26 05:25:27] 2024-04-26 03:25:02,278 | INFO     | preparing for final server update for job 6184532746 in state='finished'
[2024-04-26 05:25:27] 2024-04-26 03:25:02,278 | INFO     | this job has now completed (state=finished)
[2024-04-26 05:25:27] 2024-04-26 03:25:02,278 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-26 05:25:27] 2024-04-26 03:25:02,279 | INFO     | job 6184532746 has finished - writing final server update
[2024-04-26 05:25:27] 2024-04-26 03:25:02,279 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1645594/.job.ad'
[2024-04-26 05:25:27] 2024-04-26 03:25:02,279 | INFO     | total number of processed events: 400 (read)
[2024-04-26 05:25:27] 2024-04-26 03:25:02,286 | INFO     | executing command: lscpu
[2024-04-26 05:25:27] 2024-04-26 03:25:02,341 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-04-26 05:25:27] 2024-04-26 03:25:02,342 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-26 05:25:27] 2024-04-26 03:25:02,378 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-26 05:25:27] 2024-04-26 03:25:03,696 | INFO     | monitor loop #735: job 0:6184532746 is in state 'finished'
[2024-04-26 05:25:27] 2024-04-26 03:25:03,697 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,161 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-26 05:25:27] 2024-04-26 03:25:06,162 | INFO     | using path: /scratch/boinc/var/slot128/slots/0/PanDA_Pilot-6184532746/memory_monitor_summary.json (trf name=prmon)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,163 | INFO     | extracted standard info from prmon json
[2024-04-26 05:25:27] 2024-04-26 03:25:06,163 | INFO     | extracted standard memory fields from prmon json
[2024-04-26 05:25:27] 2024-04-26 03:25:06,164 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-26 05:25:27] 2024-04-26 03:25:06,164 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-26 05:25:27] 2024-04-26 03:25:06,167 | INFO     | fitting pss+swap vs Time
[2024-04-26 05:25:27] 2024-04-26 03:25:06,169 | INFO     | current chi2=4.1849362970597435 (change=16.073530399240543 %)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,169 | INFO     | right removable region: 152
[2024-04-26 05:25:27] 2024-04-26 03:25:06,170 | INFO     | current chi2=2.438318816083322 (change=51.10093070263637 %)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,171 | INFO     | current chi2=0.8921545866618504 (change=63.41107730551329 %)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,172 | INFO     | current chi2=0.8459083170232374 (change=5.183661030276307 %)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,172 | INFO     | left removable region: 30
[2024-04-26 05:25:27] 2024-04-26 03:25:06,173 | INFO     | current memory leak: 1.23 B/s (using 122 data points, chi2=0.00)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | ..............................
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | . Timing measurements:
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | . get job = 0 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | . initial setup = 1 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | . payload setup = 5 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | . stage-in = 0 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | . payload execution = 9595 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,174 | INFO     | . stage-out = 0 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,175 | INFO     | . log creation = 0 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,175 | INFO     | ..............................
[2024-04-26 05:25:27] 2024-04-26 03:25:06,240 | INFO     | 
[2024-04-26 05:25:27] 2024-04-26 03:25:06,240 | INFO     | job summary report
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | --------------------------------------------------
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | PanDA job id: 6184532746
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | task id: 38204311
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | errors: (none)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | pilot state: finished 
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | transexitcode: 0
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | exeerrorcode: 0
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | exeerrordiag: 
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | exitcode: 0
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | exitmsg: OK
[2024-04-26 05:25:27] 2024-04-26 03:25:06,241 | INFO     | cpuconsumptiontime: 35684 s
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | nevents: 400
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | neventsw: 0
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | pid: 3475291
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | pgrp: 3475291
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | corecount: 4
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | event service: False
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | sizes: {0: 2375665, 5: 2375871, 11: 2375927, 9605: 2413330, 9611: 2413444}
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | --------------------------------------------------
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | 
[2024-04-26 05:25:27] 2024-04-26 03:25:06,242 | INFO     | executing command: ls -lF /scratch/boinc/var/slot128/slots/0
[2024-04-26 05:25:27] 2024-04-26 03:25:06,262 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,264 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-26 05:25:27] 2024-04-26 03:25:06,265 | INFO     | job 6184532746 has completed (purged errors)
[2024-04-26 05:25:27] 2024-04-26 03:25:06,265 | INFO     | overall cleanup function is called
[2024-04-26 05:25:27] 2024-04-26 03:25:07,272 | INFO     | --- collectZombieJob: --- 10, [3475291]
[2024-04-26 05:25:27] 2024-04-26 03:25:07,273 | INFO     | zombie collector waiting for pid 3475291
[2024-04-26 05:25:27] 2024-04-26 03:25:07,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-26 05:25:27] 2024-04-26 03:25:08,278 | INFO     | collected zombie processes
[2024-04-26 05:25:27] 2024-04-26 03:25:08,278 | INFO     | will now attempt to kill all subprocesses of pid=3475291
[2024-04-26 05:25:27] 2024-04-26 03:25:08,525 | INFO     | process IDs to be killed: [3475291] (in reverse order)
[2024-04-26 05:25:27] 2024-04-26 03:25:08,673 | WARNING  | found no corresponding commands to process id(s)
[2024-04-26 05:25:27] 2024-04-26 03:25:08,673 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-26 05:25:27] 2024-04-26 03:25:08,686 | INFO     | did not find any defunct processes belonging to 3475291
[2024-04-26 05:25:27] 2024-04-26 03:25:08,694 | INFO     | did not find any defunct processes belonging to 3475291
[2024-04-26 05:25:27] 2024-04-26 03:25:08,694 | INFO     | ready for new job
[2024-04-26 05:25:27] 2024-04-26 03:25:08,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-26 05:25:27] 2024-04-26 03:25:08,695 | INFO     | *************************************
[2024-04-26 05:25:27] 2024-04-26 03:25:08,695 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-26 05:25:27] 2024-04-26 03:25:08,695 | INFO     | *************************************
[2024-04-26 05:25:27] 2024-04-26 03:25:08,695 | INFO     | 
[2024-04-26 05:25:27] 2024-04-26 03:25:08,700 | INFO     | architecture information:
[2024-04-26 05:25:27] 2024-04-26 03:25:08,700 | INFO     | executing command: cat /etc/os-release
[2024-04-26 05:25:27] 2024-04-26 03:25:08,711 | INFO     | cat /etc/os-release:
[2024-04-26 05:25:27] NAME="CentOS Linux"
[2024-04-26 05:25:27] VERSION="7 (Core)"
[2024-04-26 05:25:27] ID="centos"
[2024-04-26 05:25:27] ID_LIKE="rhel fedora"
[2024-04-26 05:25:27] VERSION_ID="7"
[2024-04-26 05:25:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-26 05:25:27] ANSI_COLOR="0;31"
[2024-04-26 05:25:27] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-26 05:25:27] HOME_URL="https://www.centos.org/"
[2024-04-26 05:25:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-26 05:25:27] 
[2024-04-26 05:25:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-26 05:25:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-26 05:25:27] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-26 05:25:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-26 05:25:27] 
[2024-04-26 05:25:27] 2024-04-26 03:25:08,712 | INFO     | *************************************
[2024-04-26 05:25:27] 2024-04-26 03:25:08,760 | INFO     | 9630s have passed since pilot start
[2024-04-26 05:25:27] 2024-04-26 03:25:09,214 | INFO     | executing command: df -mP /scratch/boinc/var/slot128/slots/0
[2024-04-26 05:25:27] 2024-04-26 03:25:09,236 | INFO     | sufficient remaining disk space (3069581459456 B)
[2024-04-26 05:25:27] 2024-04-26 03:25:09,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-26 05:25:27] 2024-04-26 03:25:09,237 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-26 05:25:27] 2024-04-26 03:25:09,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-26 05:25:27] 2024-04-26 03:25:09,577 | INFO     | all payload control threads have been joined
[2024-04-26 05:25:27] 2024-04-26 03:25:09,716 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-26 05:25:27] 2024-04-26 03:25:09,717 | INFO     | aborting loop
[2024-04-26 05:25:27] 2024-04-26 03:25:09,765 | INFO     | found 0 job(s) in 20 queues
[2024-04-26 05:25:27] 2024-04-26 03:25:09,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-26 05:25:27] 2024-04-26 03:25:09,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-26 05:25:27] 2024-04-26 03:25:09,784 | INFO     | all data control threads have been joined
[2024-04-26 05:25:27] 2024-04-26 03:25:10,106 | INFO     | all job control threads have been joined
[2024-04-26 05:25:27] 2024-04-26 03:25:10,242 | INFO     | [job] retrieve thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:10,285 | INFO     | [payload] validate_post thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:10,579 | INFO     | [payload] control thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:10,688 | INFO     | [payload] failed_post thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:10,721 | INFO     | [job] job monitor thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:10,789 | INFO     | [data] control thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:10,877 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-26 05:25:27] 2024-04-26 03:25:11,112 | INFO     | [job] control thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:11,127 | INFO     | [payload] execute_payloads thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:11,182 | INFO     | [job] validate thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:11,243 | INFO     | [data] copytool_out thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:11,251 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-26 05:25:27] 2024-04-26 03:25:11,333 | INFO     | [data] copytool_in thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:11,372 | INFO     | [job] create_data_payload thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:11,397 | INFO     | [payload] validate_pre thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:12,256 | INFO     | [job] queue monitor thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:14,882 | INFO     | [data] queue_monitor thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:19,402 | INFO     | job.realtimelogging is not enabled
[2024-04-26 05:25:27] 2024-04-26 03:25:20,408 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-26 05:25:27] 2024-04-26 03:25:21,339 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47571513357376)>', '<ExcThread(monitor, started 47571680388864)>']
[2024-04-26 05:25:27] 2024-04-26 03:25:21,814 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-26 05:25:27] 2024-04-26 03:25:21,814 | INFO     | [monitor] control thread has ended
[2024-04-26 05:25:27] 2024-04-26 03:25:26,364 | INFO     | all workflow threads have been joined
[2024-04-26 05:25:27] 2024-04-26 03:25:26,364 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-26 05:25:27] 2024-04-26 03:25:26,365 | INFO     | traces error code: 0
[2024-04-26 05:25:27] 2024-04-26 03:25:26,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-26 05:25:27] 2024-04-26 03:25:26,471 [wrapper] ==== pilot stdout END ====
[2024-04-26 05:25:27] 2024-04-26 03:25:26,477 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-26 05:25:27] 2024-04-26 03:25:26,479 [wrapper] pilotpid: 3455447
[2024-04-26 05:25:27] 2024-04-26 03:25:26,481 [wrapper] Pilot exit status: 0
[2024-04-26 05:25:27] 2024-04-26 03:25:26,490 [wrapper] pandaids: 6184532746
[2024-04-26 05:25:27] 2024-04-26 03:25:26,604 [wrapper] cleanup: SIGTERM to supervisor_pilot  151476 3455448
[2024-04-26 05:25:27] 2024-04-26 03:25:26,607 [wrapper] Test setup, not cleaning
[2024-04-26 05:25:27] 2024-04-26 03:25:26,609 [wrapper] ==== wrapper stdout END ====
[2024-04-26 05:25:27] 2024-04-26 03:25:26,612 [wrapper] ==== wrapper stderr END ====
[2024-04-26 05:25:27] 2024-04-26 03:25:26,618 [wrapper] apfmon messages muted
[2024-04-26 05:25:27]  *** Error codes and diagnostics ***
[2024-04-26 05:25:27]     "exeErrorCode": 0,
[2024-04-26 05:25:27]     "exeErrorDiag": "",
[2024-04-26 05:25:27]     "pilotErrorCode": 0,
[2024-04-26 05:25:27]     "pilotErrorDiag": "",
[2024-04-26 05:25:27]  *** Listing of results directory ***
[2024-04-26 05:25:27] total 617508
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc    462745 Apr 24 00:05 pilot3.tar.gz
[2024-04-26 05:25:27] -rwx------ 1 boinc boinc     32211 Apr 24 00:34 runpilot2-wrapper.sh
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc      6720 Apr 24 00:34 queuedata.json
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc       100 Apr 26 02:44 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-26 05:25:27] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 02:44 run_atlas
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc       105 Apr 26 02:44 job.xml
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc      6646 Apr 26 02:44 init_data.xml
[2024-04-26 05:25:27] -rw-r--r-- 2 boinc boinc 450010144 Apr 26 02:44 EVNT.38204309._000107.pool.root.1
[2024-04-26 05:25:27] -rw-r--r-- 2 boinc boinc     17537 Apr 26 02:44 start_atlas.sh
[2024-04-26 05:25:27] drwxrwx--x 2 boinc boinc      4096 Apr 26 02:44 shared
[2024-04-26 05:25:27] -rw-r--r-- 2 boinc boinc    474795 Apr 26 02:44 input.tar.gz
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc         0 Apr 26 02:44 boinc_lockfile
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc      2606 Apr 26 02:44 pandaJob.out
[2024-04-26 05:25:27] -rw------- 1 boinc boinc       424 Apr 26 02:44 setup.sh.local
[2024-04-26 05:25:27] -rw------- 1 boinc boinc    993582 Apr 26 02:44 agis_schedconf.cvmfs.json
[2024-04-26 05:25:27] -rw------- 1 boinc boinc         0 Apr 26 02:44 agis_ddmendpoints.agis.ALL.json
[2024-04-26 05:25:27] -rw------- 1 boinc boinc   1315307 Apr 26 02:44 cric_ddmendpoints.json
[2024-04-26 05:25:27] drwx------ 4 boinc boinc      4096 Apr 26 02:44 pilot3
[2024-04-26 05:25:27] -rw------- 1 boinc boinc 176416087 Apr 26 05:24 HITS.38204311._002236.pool.root.1
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc       530 Apr 26 05:24 boinc_task_state.xml
[2024-04-26 05:25:27] -rw------- 1 boinc boinc      1051 Apr 26 05:24 memory_monitor_summary.json
[2024-04-26 05:25:27] -rw------- 1 boinc boinc    287183 Apr 26 05:25 log.38204311._002236.job.log.tgz.1
[2024-04-26 05:25:27] -rw------- 1 boinc boinc      7683 Apr 26 05:25 heartbeat.json
[2024-04-26 05:25:27] -rw------- 1 boinc boinc        95 Apr 26 05:25 pilot_heartbeat.json
[2024-04-26 05:25:27] -rw------- 1 boinc boinc      4368 Apr 26 05:25 pilotlog.txt
[2024-04-26 05:25:27] -rw------- 1 boinc boinc    919590 Apr 26 05:25 log.38204311._002236.job.log.1
[2024-04-26 05:25:27] -rw------- 1 boinc boinc       357 Apr 26 05:25 output.list
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc       620 Apr 26 05:25 runtime_log
[2024-04-26 05:25:27] -rw------- 1 boinc boinc   1228800 Apr 26 05:25 result.tar.gz
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc     11428 Apr 26 05:25 runtime_log.err
[2024-04-26 05:25:27] -rw------- 1 boinc boinc       656 Apr 26 05:25 ZalKDmmtdJ5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmwsIKDm1gdbCn.diag
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc      8192 Apr 26 05:25 boinc_mmap_file
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc        27 Apr 26 05:25 wrapper_checkpoint.txt
[2024-04-26 05:25:27] -rw-r--r-- 1 boinc boinc     20902 Apr 26 05:25 stderr.txt
[2024-04-26 05:25:27] HITS file was successfully produced:
[2024-04-26 05:25:27] -rw------- 1 boinc boinc 176416087 Apr 26 05:24 shared/HITS.pool.root.1
[2024-04-26 05:25:27]  *** Contents of shared directory: ***
[2024-04-26 05:25:27] total 613440
[2024-04-26 05:25:27] -rw-r--r-- 2 boinc boinc 450010144 Apr 26 02:44 ATLAS.root_0
[2024-04-26 05:25:27] -rw-r--r-- 2 boinc boinc     17537 Apr 26 02:44 start_atlas.sh
[2024-04-26 05:25:27] -rw-r--r-- 2 boinc boinc    474795 Apr 26 02:44 input.tar.gz
[2024-04-26 05:25:27] -rw------- 1 boinc boinc 176416087 Apr 26 05:24 HITS.pool.root.1
[2024-04-26 05:25:27] -rw------- 1 boinc boinc   1228800 Apr 26 05:25 result.tar.gz
05:25:29 (3449257): run_atlas exited; CPU time 35472.223987
05:25:29 (3449257): called boinc_finish(0)

</stderr_txt>
]]>

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