Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:35:24 (2874270): wrapper (7.7.26015): starting
21:35:24 (2874270): wrapper: running run_atlas (--nthreads 4)
[2024-04-28 21:35:24] Arguments: --nthreads 4
[2024-04-28 21:35:24] Threads: 4
[2024-04-28 21:35:24] Checking for CVMFS
[2024-04-28 21:35:24] No cvmfs_config command found, will try listing directly
[2024-04-28 21:35:24] CVMFS is ok
[2024-04-28 21:35:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-28 21:35:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-28 21:35:24] Further information can be found at the LHC@home message board.
[2024-04-28 21:35:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-28 21:35:24] Checking for apptainer binary...
[2024-04-28 21:35:24] which: no apptainer in ((null))
[2024-04-28 21:35:24] apptainer is not installed, using version from CVMFS
[2024-04-28 21:35:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-28 21:35:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot60/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2024-04-28 21:35:25] apptainer works
[2024-04-28 21:35:25] Set ATHENA_PROC_NUMBER=4
[2024-04-28 21:35:25] Set ATHENA_CORE_NUMBER=4
[2024-04-28 21:35:25] Starting ATLAS job with PandaID=6184169072
[2024-04-28 21:35:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot60/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-29 00:21:07]  *** The last 200 lines of the pilot log: ***
[2024-04-29 00:21:07]  mtime=0
[2024-04-29 00:21:07]  protocol_id=None
[2024-04-29 00:21:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-29 00:21:07]  replicas=None
[2024-04-29 00:21:07]  scope=mc23_13p6TeV
[2024-04-29 00:21:07]  status=None
[2024-04-29 00:21:07]  status_code=0
[2024-04-29 00:21:07]  storage_token=
[2024-04-29 00:21:07]  surl=/scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6184169072/log.38207159._000929.job.log.tgz.1
[2024-04-29 00:21:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/25/log.38207159._000929.job.log.tgz.1
[2024-04-29 00:21:07]  workdir=None
[2024-04-29 00:21:07] ]
[2024-04-29 00:21:07] 2024-04-28 22:20:40,107 | INFO     | transferring file log.38207159._000929.job.log.tgz.1 from /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6184169072/log.38207159._000929.job.log.tgz.1 to /scratch/b
[2024-04-29 00:21:07] 2024-04-28 22:20:40,107 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6184169072/log.38207159._000929.job.log.tgz.1 /scratch/boinc/var/slot60/slots/0/lo
[2024-04-29 00:21:07] 2024-04-28 22:20:40,124 | INFO     | adding to output.list: log.38207159._000929.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/25/log.38207159._000929.job.log.tg
[2024-04-29 00:21:07] 2024-04-28 22:20:40,125 | INFO     | summary of transferred files:
[2024-04-29 00:21:07] 2024-04-28 22:20:40,125 | INFO     |  -- lfn=log.38207159._000929.job.log.tgz.1, status_code=0, status=transferred
[2024-04-29 00:21:07] 2024-04-28 22:20:40,126 | INFO     | stage-out finished correctly
[2024-04-29 00:21:07] 2024-04-28 22:20:40,205 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-29 00:21:07] 2024-04-28 22:20:40,886 | INFO     | monitor loop #766: job 0:6184169072 is in state 'finished'
[2024-04-29 00:21:07] 2024-04-28 22:20:40,886 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-29 00:21:07] 2024-04-28 22:20:43,188 | INFO     | job 6184169072 has state=finished
[2024-04-29 00:21:07] 2024-04-28 22:20:43,188 | INFO     | preparing for final server update for job 6184169072 in state='finished'
[2024-04-29 00:21:07] 2024-04-28 22:20:43,194 | INFO     | executing command: curl --connect-timeout 20 --max-time 120 -H "Content-Type: application/json" -X POST --upload-file /scratch/boinc/var/slot60/slots/0/PanDA_Pilot
[2024-04-29 00:21:07] 2024-04-28 22:20:43,389 | INFO     | monitor loop #767: job 0:6184169072 is in state 'finished'
[2024-04-29 00:21:07] 2024-04-28 22:20:43,389 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-29 00:21:07] 2024-04-28 22:20:44,376 | INFO     | this job has now completed (state=finished)
[2024-04-29 00:21:07] 2024-04-28 22:20:44,376 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-29 00:21:07] 2024-04-28 22:20:44,376 | INFO     | job 6184169072 has finished - writing final server update
[2024-04-29 00:21:07] 2024-04-28 22:20:44,376 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_684548/.job.ad'
[2024-04-29 00:21:07] 2024-04-28 22:20:44,376 | INFO     | total number of processed events: 400 (read)
[2024-04-29 00:21:07] 2024-04-28 22:20:44,380 | INFO     | executing command: lscpu
[2024-04-29 00:21:07] 2024-04-28 22:20:44,428 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-04-29 00:21:07] 2024-04-28 22:20:44,428 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-29 00:21:07] 2024-04-28 22:20:44,460 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-29 00:21:07] 2024-04-28 22:20:45,893 | INFO     | monitor loop #768: job 0:6184169072 is in state 'finished'
[2024-04-29 00:21:07] 2024-04-28 22:20:45,893 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,591 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-29 00:21:07] 2024-04-28 22:20:47,592 | INFO     | using path: /scratch/boinc/var/slot60/slots/0/PanDA_Pilot-6184169072/memory_monitor_summary.json (trf name=prmon)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,593 | INFO     | extracted standard info from prmon json
[2024-04-29 00:21:07] 2024-04-28 22:20:47,593 | INFO     | extracted standard memory fields from prmon json
[2024-04-29 00:21:07] 2024-04-28 22:20:47,593 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-29 00:21:07] 2024-04-28 22:20:47,593 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-29 00:21:07] 2024-04-28 22:20:47,595 | INFO     | fitting pss+swap vs Time
[2024-04-29 00:21:07] 2024-04-28 22:20:47,596 | INFO     | current chi2=3.571760171676574 (change=-0.08083896743528973 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,596 | INFO     | right removable region: 156
[2024-04-29 00:21:07] 2024-04-28 22:20:47,597 | INFO     | current chi2=1.2922922715218363 (change=63.78992751231414 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,597 | INFO     | current chi2=0.07082445666711712 (change=94.51947069344365 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,598 | INFO     | current chi2=0.03700508633779818 (change=47.750977445931944 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,598 | INFO     | current chi2=0.021670385051943426 (change=41.439441988793305 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,599 | INFO     | current chi2=0.01584975411617313 (change=26.85984084647492 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,599 | INFO     | current chi2=0.00998920169997555 (change=36.97566771851343 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,600 | INFO     | current chi2=0.00582288807785454 (change=41.70817395879801 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,600 | INFO     | current chi2=5.234836818687228e-05 (change=99.10098962083845 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | current chi2=4.6053471602454646e-05 (change=12.025010143479973 %)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | left removable region: 90
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | current memory leak: 0.56 B/s (using 66 data points, chi2=0.00)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | ..............................
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . Timing measurements:
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . get job = 0 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . initial setup = 1 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . payload setup = 5 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . stage-in = 0 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . payload execution = 9880 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . stage-out = 0 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,601 | INFO     | . log creation = 0 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,602 | INFO     | ..............................
[2024-04-29 00:21:07] 2024-04-28 22:20:47,655 | INFO     | 
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | job summary report
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | --------------------------------------------------
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | PanDA job id: 6184169072
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | task id: 38207159
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | errors: (none)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | pilot state: finished 
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | transexitcode: 0
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | exeerrorcode: 0
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | exeerrordiag: 
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | exitcode: 0
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | exitmsg: OK
[2024-04-29 00:21:07] 2024-04-28 22:20:47,656 | INFO     | cpuconsumptiontime: 36660 s
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | nevents: 400
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | neventsw: 0
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | pid: 2885669
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | pgrp: 2885669
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | corecount: 4
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | event service: False
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | sizes: {0: 2375711, 4: 2375917, 11: 2375945, 9890: 2404500, 9891: 2413538, 9899: 2413652}
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | --------------------------------------------------
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | 
[2024-04-29 00:21:07] 2024-04-28 22:20:47,657 | INFO     | executing command: ls -lF /scratch/boinc/var/slot60/slots/0
[2024-04-29 00:21:07] 2024-04-28 22:20:47,681 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,682 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-29 00:21:07] 2024-04-28 22:20:47,683 | INFO     | job 6184169072 has completed (purged errors)
[2024-04-29 00:21:07] 2024-04-28 22:20:47,684 | INFO     | overall cleanup function is called
[2024-04-29 00:21:07] 2024-04-28 22:20:48,691 | INFO     | --- collectZombieJob: --- 10, [2885669]
[2024-04-29 00:21:07] 2024-04-28 22:20:48,691 | INFO     | zombie collector waiting for pid 2885669
[2024-04-29 00:21:07] 2024-04-28 22:20:48,691 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-29 00:21:07] 2024-04-28 22:20:49,696 | INFO     | collected zombie processes
[2024-04-29 00:21:07] 2024-04-28 22:20:49,696 | INFO     | will now attempt to kill all subprocesses of pid=2885669
[2024-04-29 00:21:07] 2024-04-28 22:20:49,837 | INFO     | process IDs to be killed: [2885669] (in reverse order)
[2024-04-29 00:21:07] 2024-04-28 22:20:49,923 | WARNING  | found no corresponding commands to process id(s)
[2024-04-29 00:21:07] 2024-04-28 22:20:49,924 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-29 00:21:07] 2024-04-28 22:20:49,930 | INFO     | did not find any defunct processes belonging to 2885669
[2024-04-29 00:21:07] 2024-04-28 22:20:49,935 | INFO     | did not find any defunct processes belonging to 2885669
[2024-04-29 00:21:07] 2024-04-28 22:20:49,936 | INFO     | ready for new job
[2024-04-29 00:21:07] 2024-04-28 22:20:49,936 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-29 00:21:07] 2024-04-28 22:20:49,937 | INFO     | *************************************
[2024-04-29 00:21:07] 2024-04-28 22:20:49,937 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-29 00:21:07] 2024-04-28 22:20:49,937 | INFO     | *************************************
[2024-04-29 00:21:07] 2024-04-28 22:20:49,937 | INFO     | 
[2024-04-29 00:21:07] 2024-04-28 22:20:49,940 | INFO     | architecture information:
[2024-04-29 00:21:07] 2024-04-28 22:20:49,941 | INFO     | executing command: cat /etc/os-release
[2024-04-29 00:21:07] 2024-04-28 22:20:49,956 | INFO     | cat /etc/os-release:
[2024-04-29 00:21:07] NAME="CentOS Linux"
[2024-04-29 00:21:07] VERSION="7 (Core)"
[2024-04-29 00:21:07] ID="centos"
[2024-04-29 00:21:07] ID_LIKE="rhel fedora"
[2024-04-29 00:21:07] VERSION_ID="7"
[2024-04-29 00:21:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-29 00:21:07] ANSI_COLOR="0;31"
[2024-04-29 00:21:07] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-29 00:21:07] HOME_URL="https://www.centos.org/"
[2024-04-29 00:21:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-29 00:21:07] 
[2024-04-29 00:21:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-29 00:21:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-29 00:21:07] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-29 00:21:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-29 00:21:07] 
[2024-04-29 00:21:07] 2024-04-28 22:20:49,956 | INFO     | *************************************
[2024-04-29 00:21:07] 2024-04-28 22:20:50,459 | INFO     | executing command: df -mP /scratch/boinc/var/slot60/slots/0
[2024-04-29 00:21:07] 2024-04-28 22:20:50,479 | INFO     | sufficient remaining disk space (616402255872 B)
[2024-04-29 00:21:07] 2024-04-28 22:20:50,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-29 00:21:07] 2024-04-28 22:20:50,479 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-29 00:21:07] 2024-04-28 22:20:50,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-29 00:21:07] 2024-04-28 22:20:50,767 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-29 00:21:07] 2024-04-28 22:20:50,769 | INFO     | found 0 job(s) in 20 queues
[2024-04-29 00:21:07] 2024-04-28 22:20:50,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-29 00:21:07] 2024-04-28 22:20:50,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-29 00:21:07] 2024-04-28 22:20:50,903 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-04-29 00:21:07] 2024-04-28 22:20:50,903 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-04-29 00:21:07] 2024-04-28 22:20:50,903 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-29 00:21:07] 2024-04-28 22:20:50,904 | INFO     | will abort loop
[2024-04-29 00:21:07] 2024-04-28 22:20:51,313 | INFO     | all data control threads have been joined
[2024-04-29 00:21:07] 2024-04-28 22:20:51,465 | INFO     | all job control threads have been joined
[2024-04-29 00:21:07] 2024-04-28 22:20:51,481 | INFO     | [job] retrieve thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:51,569 | INFO     | all payload control threads have been joined
[2024-04-29 00:21:07] 2024-04-28 22:20:51,618 | INFO     | [job] create_data_payload thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:51,776 | INFO     | [payload] failed_post thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:51,901 | INFO     | [payload] execute_payloads thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:51,909 | INFO     | [job] job monitor thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:51,913 | INFO     | [payload] validate_pre thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:52,319 | INFO     | [data] control thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:52,470 | INFO     | [job] control thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:52,574 | INFO     | [payload] control thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:52,595 | INFO     | [data] copytool_in thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:52,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-29 00:21:07] 2024-04-28 22:20:52,722 | INFO     | [data] copytool_out thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:52,751 | INFO     | [payload] validate_post thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:52,913 | INFO     | [job] validate thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:53,670 | INFO     | [job] queue monitor thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:20:54,772 | INFO     | [data] queue_monitor thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:21:00,584 | INFO     | job.realtimelogging is not enabled
[2024-04-29 00:21:07] 2024-04-28 22:21:01,589 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-29 00:21:07] 2024-04-28 22:21:01,818 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47601372709952)>', '<ExcThread(monitor, started 47601543943936)>']
[2024-04-29 00:21:07] 2024-04-28 22:21:02,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-29 00:21:07] 2024-04-28 22:21:02,822 | INFO     | [monitor] control thread has ended
[2024-04-29 00:21:07] 2024-04-28 22:21:06,843 | INFO     | all workflow threads have been joined
[2024-04-29 00:21:07] 2024-04-28 22:21:06,843 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-29 00:21:07] 2024-04-28 22:21:06,843 | INFO     | traces error code: 0
[2024-04-29 00:21:07] 2024-04-28 22:21:06,843 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-29 00:21:07] 2024-04-28 22:21:06,918 [wrapper] ==== pilot stdout END ====
[2024-04-29 00:21:07] 2024-04-28 22:21:06,921 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-29 00:21:07] 2024-04-28 22:21:06,924 [wrapper] pilotpid: 2878597
[2024-04-29 00:21:07] 2024-04-28 22:21:06,926 [wrapper] Pilot exit status: 0
[2024-04-29 00:21:07] 2024-04-28 22:21:06,934 [wrapper] pandaids: 6184169072
[2024-04-29 00:21:07] 2024-04-28 22:21:06,993 [wrapper] cleanup: SIGTERM to supervisor_pilot 3363604 2878598
[2024-04-29 00:21:07] 2024-04-28 22:21:06,995 [wrapper] Test setup, not cleaning
[2024-04-29 00:21:07] 2024-04-28 22:21:06,998 [wrapper] ==== wrapper stdout END ====
[2024-04-29 00:21:07] 2024-04-28 22:21:07,000 [wrapper] ==== wrapper stderr END ====
[2024-04-29 00:21:07] 2024-04-28 22:21:07,004 [wrapper] apfmon messages muted
[2024-04-29 00:21:07]  *** Error codes and diagnostics ***
[2024-04-29 00:21:07]     "exeErrorCode": 0,
[2024-04-29 00:21:07]     "exeErrorDiag": "",
[2024-04-29 00:21:07]     "pilotErrorCode": 0,
[2024-04-29 00:21:07]     "pilotErrorDiag": "",
[2024-04-29 00:21:07]  *** Listing of results directory ***
[2024-04-29 00:21:07] total 701660
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc    462745 Apr 23 10:18 pilot3.tar.gz
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc      6720 Apr 23 10:23 queuedata.json
[2024-04-29 00:21:07] -rwx------ 1 boinc boinc     32211 Apr 23 10:24 runpilot2-wrapper.sh
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc       100 Apr 28 21:35 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-29 00:21:07] -rwxr-xr-x 1 boinc boinc      7986 Apr 28 21:35 run_atlas
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc       105 Apr 28 21:35 job.xml
[2024-04-29 00:21:07] -rw-r--r-- 2 boinc boinc 520843310 Apr 28 21:35 EVNT.38207157._000038.pool.root.1
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc      6662 Apr 28 21:35 init_data.xml
[2024-04-29 00:21:07] -rw-r--r-- 2 boinc boinc     17537 Apr 28 21:35 start_atlas.sh
[2024-04-29 00:21:07] drwxrwx--x 2 boinc boinc      4096 Apr 28 21:35 shared
[2024-04-29 00:21:07] -rw-r--r-- 2 boinc boinc    474826 Apr 28 21:35 input.tar.gz
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc         0 Apr 28 21:35 boinc_lockfile
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc      2647 Apr 28 21:35 pandaJob.out
[2024-04-29 00:21:07] -rw------- 1 boinc boinc       424 Apr 28 21:35 setup.sh.local
[2024-04-29 00:21:07] -rw------- 1 boinc boinc   1000981 Apr 28 21:35 agis_schedconf.cvmfs.json
[2024-04-29 00:21:07] -rw------- 1 boinc boinc         0 Apr 28 21:35 agis_ddmendpoints.agis.ALL.json
[2024-04-29 00:21:07] -rw------- 1 boinc boinc   1315307 Apr 28 21:35 cric_ddmendpoints.json
[2024-04-29 00:21:07] drwx------ 4 boinc boinc      4096 Apr 28 21:35 pilot3
[2024-04-29 00:21:07] -rw------- 1 boinc boinc        95 Apr 29 00:20 pilot_heartbeat.json
[2024-04-29 00:21:07] -rw------- 1 boinc boinc 191696401 Apr 29 00:20 HITS.38207159._000929.pool.root.1
[2024-04-29 00:21:07] -rw------- 1 boinc boinc      1047 Apr 29 00:20 memory_monitor_summary.json
[2024-04-29 00:21:07] -rw------- 1 boinc boinc    278919 Apr 29 00:20 log.38207159._000929.job.log.tgz.1
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc       530 Apr 29 00:20 boinc_task_state.xml
[2024-04-29 00:21:07] -rw------- 1 boinc boinc      7735 Apr 29 00:20 heartbeat.json
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc      8192 Apr 29 00:20 boinc_mmap_file
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc        27 Apr 29 00:20 wrapper_checkpoint.txt
[2024-04-29 00:21:07] -rw------- 1 boinc boinc      4479 Apr 29 00:21 pilotlog.txt
[2024-04-29 00:21:07] -rw------- 1 boinc boinc    954867 Apr 29 00:21 log.38207159._000929.job.log.1
[2024-04-29 00:21:07] -rw------- 1 boinc boinc       357 Apr 29 00:21 output.list
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc       620 Apr 29 00:21 runtime_log
[2024-04-29 00:21:07] -rw------- 1 boinc boinc   1249280 Apr 29 00:21 result.tar.gz
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc     11409 Apr 29 00:21 runtime_log.err
[2024-04-29 00:21:07] -rw------- 1 boinc boinc       656 Apr 29 00:21 mJpLDmOdQJ5n9Rq4apoT9bVoABFKDmABFKDmtztZDmpBMKDmpEYtMn.diag
[2024-04-29 00:21:07] -rw-r--r-- 1 boinc boinc     21771 Apr 29 00:21 stderr.txt
[2024-04-29 00:21:07] HITS file was successfully produced:
[2024-04-29 00:21:07] -rw------- 1 boinc boinc 191696401 Apr 29 00:20 shared/HITS.pool.root.1
[2024-04-29 00:21:07]  *** Contents of shared directory: ***
[2024-04-29 00:21:07] total 697556
[2024-04-29 00:21:07] -rw-r--r-- 2 boinc boinc 520843310 Apr 28 21:35 ATLAS.root_0
[2024-04-29 00:21:07] -rw-r--r-- 2 boinc boinc     17537 Apr 28 21:35 start_atlas.sh
[2024-04-29 00:21:07] -rw-r--r-- 2 boinc boinc    474826 Apr 28 21:35 input.tar.gz
[2024-04-29 00:21:07] -rw------- 1 boinc boinc 191696401 Apr 29 00:20 HITS.pool.root.1
[2024-04-29 00:21:07] -rw------- 1 boinc boinc   1249280 Apr 29 00:21 result.tar.gz
00:21:09 (2874270): run_atlas exited; CPU time 36451.417087
00:21:09 (2874270): called boinc_finish(0)

</stderr_txt>
]]>

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