Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:53:41 (35957): wrapper (7.7.26015): starting
13:53:41 (35957): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 13:53:41] Arguments: --nthreads 4
[2024-04-26 13:53:41] Threads: 4
[2024-04-26 13:53:41] Checking for CVMFS
[2024-04-26 13:53:41] No cvmfs_config command found, will try listing directly
[2024-04-26 13:53:41] CVMFS is ok
[2024-04-26 13:53:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 13:53:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 13:53:41] Further information can be found at the LHC@home message board.
[2024-04-26 13:53:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 13:53:41] Checking for apptainer binary...
[2024-04-26 13:53:41] which: no apptainer in ((null))
[2024-04-26 13:53:41] apptainer is not installed, using version from CVMFS
[2024-04-26 13:53:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 13:53:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2024-04-26 13:53:42] apptainer works
[2024-04-26 13:53:42] Set ATHENA_PROC_NUMBER=4
[2024-04-26 13:53:42] Set ATHENA_CORE_NUMBER=4
[2024-04-26 13:53:42] Starting ATLAS job with PandaID=6182566711
[2024-04-26 13:53:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-26 17:00:38]  *** The last 200 lines of the pilot log: ***
[2024-04-26 17:00:38]  dataset=mc23_13p6TeV.603414.PhPy8EG_NNPDF23_A14_ggH125_NNLOPS_tautauh30h20.simul.log.e8559_e8528_s4159_tid38207159_00
[2024-04-26 17:00:38]  ddm_activity=['write_lan', 'write_wan']
[2024-04-26 17:00:38]  ddmendpoint=NDGF-T1_DATADISK
[2024-04-26 17:00:38]  direct_access_lan=False
[2024-04-26 17:00:38]  direct_access_wan=False
[2024-04-26 17:00:38]  domain=
[2024-04-26 17:00:38]  filesize=311265
[2024-04-26 17:00:38]  filetype=log
[2024-04-26 17:00:38]  guid=cdac1fa0-c71b-47c6-afa9-3dc0fe215b3a
[2024-04-26 17:00:38]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-26 17:00:38]  is_tar=False
[2024-04-26 17:00:38]  lfn=log.38207159._000232.job.log.tgz.1
[2024-04-26 17:00:38]  mtime=0
[2024-04-26 17:00:38]  protocol_id=None
[2024-04-26 17:00:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-26 17:00:38]  replicas=None
[2024-04-26 17:00:38]  scope=mc23_13p6TeV
[2024-04-26 17:00:38]  status=None
[2024-04-26 17:00:38]  status_code=0
[2024-04-26 17:00:38]  storage_token=
[2024-04-26 17:00:38]  surl=/scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182566711/log.38207159._000232.job.log.tgz.1
[2024-04-26 17:00:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/f1/log.38207159._000232.job.log.tgz.1
[2024-04-26 17:00:38]  workdir=None
[2024-04-26 17:00:38] ]
[2024-04-26 17:00:38] 2024-04-26 15:00:09,045 | INFO     | transferring file log.38207159._000232.job.log.tgz.1 from /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182566711/log.38207159._000232.job.log.tgz.1 to /scratch/b
[2024-04-26 17:00:38] 2024-04-26 15:00:09,045 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182566711/log.38207159._000232.job.log.tgz.1 /scratch/boinc/var/slot48/slots/0/lo
[2024-04-26 17:00:38] 2024-04-26 15:00:09,064 | INFO     | adding to output.list: log.38207159._000232.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f1/f1/log.38207159._000232.job.log.tg
[2024-04-26 17:00:38] 2024-04-26 15:00:09,064 | INFO     | summary of transferred files:
[2024-04-26 17:00:38] 2024-04-26 15:00:09,065 | INFO     |  -- lfn=log.38207159._000232.job.log.tgz.1, status_code=0, status=transferred
[2024-04-26 17:00:38] 2024-04-26 15:00:09,065 | INFO     | stage-out finished correctly
[2024-04-26 17:00:38] 2024-04-26 15:00:11,356 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-26 17:00:38] 2024-04-26 15:00:13,481 | INFO     | job 6182566711 has state=finished
[2024-04-26 17:00:38] 2024-04-26 15:00:13,481 | INFO     | preparing for final server update for job 6182566711 in state='finished'
[2024-04-26 17:00:38] 2024-04-26 15:00:13,481 | INFO     | this job has now completed (state=finished)
[2024-04-26 17:00:38] 2024-04-26 15:00:13,482 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-26 17:00:38] 2024-04-26 15:00:13,482 | INFO     | job 6182566711 has finished - writing final server update
[2024-04-26 17:00:38] 2024-04-26 15:00:13,482 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_790524/.job.ad'
[2024-04-26 17:00:38] 2024-04-26 15:00:13,482 | INFO     | total number of processed events: 400 (read)
[2024-04-26 17:00:38] 2024-04-26 15:00:13,488 | INFO     | executing command: lscpu
[2024-04-26 17:00:38] 2024-04-26 15:00:13,533 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-04-26 17:00:38] 2024-04-26 15:00:13,533 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-26 17:00:38] 2024-04-26 15:00:13,568 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-26 17:00:38] 2024-04-26 15:00:16,817 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-26 17:00:38] 2024-04-26 15:00:16,818 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182566711/memory_monitor_summary.json (trf name=prmon)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,824 | INFO     | extracted standard info from prmon json
[2024-04-26 17:00:38] 2024-04-26 15:00:16,824 | INFO     | extracted standard memory fields from prmon json
[2024-04-26 17:00:38] 2024-04-26 15:00:16,825 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-26 17:00:38] 2024-04-26 15:00:16,825 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-26 17:00:38] 2024-04-26 15:00:16,829 | INFO     | fitting pss+swap vs Time
[2024-04-26 17:00:38] 2024-04-26 15:00:16,831 | INFO     | current chi2=4.198774644059856 (change=0.01573358828451233 %)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,832 | INFO     | right removable region: 177
[2024-04-26 17:00:38] 2024-04-26 15:00:16,833 | INFO     | current chi2=1.629642119283678 (change=61.193780180432775 %)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,834 | INFO     | current chi2=0.08499447541904298 (change=94.78446988984287 %)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,836 | INFO     | current chi2=0.00200329262888895 (change=97.64303195118008 %)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,837 | INFO     | current chi2=0.0017055456598891957 (change=14.86287947681853 %)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,837 | INFO     | left removable region: 40
[2024-04-26 17:00:38] 2024-04-26 15:00:16,838 | INFO     | current memory leak: 5.25 B/s (using 137 data points, chi2=0.00)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,838 | INFO     | ..............................
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . Timing measurements:
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . get job = 0 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . initial setup = 1 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . payload setup = 4 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . stage-in = 0 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . payload execution = 11155 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . stage-out = 0 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | . log creation = 0 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,839 | INFO     | ..............................
[2024-04-26 17:00:38] 2024-04-26 15:00:16,904 | INFO     | 
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | job summary report
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | --------------------------------------------------
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | PanDA job id: 6182566711
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | task id: 38207159
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | errors: (none)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | pilot state: finished 
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | transexitcode: 0
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | exeerrorcode: 0
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | exeerrordiag: 
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | exitcode: 0
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | exitmsg: OK
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | cpuconsumptiontime: 41658 s
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | nevents: 400
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | neventsw: 0
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | pid: 47333
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | pgrp: 47333
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | corecount: 4
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | event service: False
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | sizes: {0: 2375708, 4: 2375914, 11: 2375942, 11164: 2405052, 11165: 2414034, 11167: 2414090, 11173: 2414388}
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | --------------------------------------------------
[2024-04-26 17:00:38] 2024-04-26 15:00:16,905 | INFO     | 
[2024-04-26 17:00:38] 2024-04-26 15:00:16,906 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2024-04-26 17:00:38] 2024-04-26 15:00:16,958 | WARNING  | process 47333 is no longer using CPU - aborting
[2024-04-26 17:00:38] 2024-04-26 15:00:16,958 | INFO     | aborting job monitoring since job object (job id=6182566711) has expired
[2024-04-26 17:00:38] 2024-04-26 15:00:16,979 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,980 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | job 6182566711 has completed (purged errors)
[2024-04-26 17:00:38] 2024-04-26 15:00:16,981 | INFO     | overall cleanup function is called
[2024-04-26 17:00:38] 2024-04-26 15:00:17,989 | INFO     | --- collectZombieJob: --- 10, [47333]
[2024-04-26 17:00:38] 2024-04-26 15:00:17,989 | INFO     | zombie collector waiting for pid 47333
[2024-04-26 17:00:38] 2024-04-26 15:00:17,989 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-26 17:00:38] 2024-04-26 15:00:18,994 | INFO     | collected zombie processes
[2024-04-26 17:00:38] 2024-04-26 15:00:18,994 | INFO     | will now attempt to kill all subprocesses of pid=47333
[2024-04-26 17:00:38] 2024-04-26 15:00:19,158 | INFO     | process IDs to be killed: [47333] (in reverse order)
[2024-04-26 17:00:38] 2024-04-26 15:00:19,250 | WARNING  | found no corresponding commands to process id(s)
[2024-04-26 17:00:38] 2024-04-26 15:00:19,250 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-26 17:00:38] 2024-04-26 15:00:19,256 | INFO     | did not find any defunct processes belonging to 47333
[2024-04-26 17:00:38] 2024-04-26 15:00:19,261 | INFO     | did not find any defunct processes belonging to 47333
[2024-04-26 17:00:38] 2024-04-26 15:00:19,262 | INFO     | ready for new job
[2024-04-26 17:00:38] 2024-04-26 15:00:19,262 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-26 17:00:38] 2024-04-26 15:00:19,263 | INFO     | *************************************
[2024-04-26 17:00:38] 2024-04-26 15:00:19,264 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-26 17:00:38] 2024-04-26 15:00:19,264 | INFO     | *************************************
[2024-04-26 17:00:38] 2024-04-26 15:00:19,264 | INFO     | 
[2024-04-26 17:00:38] 2024-04-26 15:00:19,268 | INFO     | architecture information:
[2024-04-26 17:00:38] 2024-04-26 15:00:19,268 | INFO     | executing command: cat /etc/os-release
[2024-04-26 17:00:38] 2024-04-26 15:00:19,285 | INFO     | cat /etc/os-release:
[2024-04-26 17:00:38] NAME="CentOS Linux"
[2024-04-26 17:00:38] VERSION="7 (Core)"
[2024-04-26 17:00:38] ID="centos"
[2024-04-26 17:00:38] ID_LIKE="rhel fedora"
[2024-04-26 17:00:38] VERSION_ID="7"
[2024-04-26 17:00:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-26 17:00:38] ANSI_COLOR="0;31"
[2024-04-26 17:00:38] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-26 17:00:38] HOME_URL="https://www.centos.org/"
[2024-04-26 17:00:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-26 17:00:38] 
[2024-04-26 17:00:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-26 17:00:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-26 17:00:38] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-26 17:00:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-26 17:00:38] 
[2024-04-26 17:00:38] 2024-04-26 15:00:19,286 | INFO     | *************************************
[2024-04-26 17:00:38] 2024-04-26 15:00:19,789 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2024-04-26 17:00:38] 2024-04-26 15:00:19,810 | INFO     | sufficient remaining disk space (630378725376 B)
[2024-04-26 17:00:38] 2024-04-26 15:00:19,811 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-26 17:00:38] 2024-04-26 15:00:19,811 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-26 17:00:38] 2024-04-26 15:00:19,811 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-26 17:00:38] 2024-04-26 15:00:20,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-26 17:00:38] 2024-04-26 15:00:20,463 | INFO     | aborting loop
[2024-04-26 17:00:38] 2024-04-26 15:00:20,607 | INFO     | all data control threads have been joined
[2024-04-26 17:00:38] 2024-04-26 15:00:20,631 | INFO     | found 0 job(s) in 20 queues
[2024-04-26 17:00:38] 2024-04-26 15:00:20,632 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-26 17:00:38] 2024-04-26 15:00:20,632 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-26 17:00:38] 2024-04-26 15:00:20,816 | INFO     | [job] retrieve thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:21,144 | INFO     | [payload] validate_pre thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:21,163 | INFO     | [payload] execute_payloads thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:21,285 | INFO     | all payload control threads have been joined
[2024-04-26 17:00:38] 2024-04-26 15:00:21,421 | INFO     | all job control threads have been joined
[2024-04-26 17:00:38] 2024-04-26 15:00:21,468 | INFO     | [job] job monitor thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:21,612 | INFO     | [data] control thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:21,817 | INFO     | [data] copytool_out thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:21,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-26 17:00:38] 2024-04-26 15:00:21,915 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-26 17:00:38] 2024-04-26 15:00:21,999 | INFO     | [job] validate thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:22,045 | INFO     | [payload] validate_post thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:22,095 | INFO     | [data] copytool_in thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:22,290 | INFO     | [job] create_data_payload thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:22,290 | INFO     | [payload] control thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:22,355 | INFO     | [payload] failed_post thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:22,426 | INFO     | [job] control thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:22,920 | INFO     | [job] queue monitor thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:25,920 | INFO     | [data] queue_monitor thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:30,459 | INFO     | job.realtimelogging is not enabled
[2024-04-26 17:00:38] 2024-04-26 15:00:31,464 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-26 17:00:38] 2024-04-26 15:00:32,614 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47380788069440)>', '<ExcThread(monitor, started 47380955100928)>']
[2024-04-26 17:00:38] 2024-04-26 15:00:32,679 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-26 17:00:38] 2024-04-26 15:00:32,680 | INFO     | [monitor] control thread has ended
[2024-04-26 17:00:38] 2024-04-26 15:00:37,639 | INFO     | all workflow threads have been joined
[2024-04-26 17:00:38] 2024-04-26 15:00:37,640 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-26 17:00:38] 2024-04-26 15:00:37,640 | INFO     | traces error code: 0
[2024-04-26 17:00:38] 2024-04-26 15:00:37,640 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-26 17:00:38] 2024-04-26 15:00:37,743 [wrapper] ==== pilot stdout END ====
[2024-04-26 17:00:38] 2024-04-26 15:00:37,745 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-26 17:00:38] 2024-04-26 15:00:37,748 [wrapper] pilotpid: 40289
[2024-04-26 17:00:38] 2024-04-26 15:00:37,750 [wrapper] Pilot exit status: 0
[2024-04-26 17:00:38] 2024-04-26 15:00:37,757 [wrapper] pandaids: 6182566711
[2024-04-26 17:00:38] 2024-04-26 15:00:37,815 [wrapper] cleanup: SIGTERM to supervisor_pilot  642808 40290
[2024-04-26 17:00:38] 2024-04-26 15:00:37,818 [wrapper] Test setup, not cleaning
[2024-04-26 17:00:38] 2024-04-26 15:00:37,820 [wrapper] ==== wrapper stdout END ====
[2024-04-26 17:00:38] 2024-04-26 15:00:37,823 [wrapper] ==== wrapper stderr END ====
[2024-04-26 17:00:38] 2024-04-26 15:00:37,827 [wrapper] apfmon messages muted
[2024-04-26 17:00:38]  *** Error codes and diagnostics ***
[2024-04-26 17:00:38]     "exeErrorCode": 0,
[2024-04-26 17:00:38]     "exeErrorDiag": "",
[2024-04-26 17:00:38]     "pilotErrorCode": 0,
[2024-04-26 17:00:38]     "pilotErrorDiag": "",
[2024-04-26 17:00:38]  *** Listing of results directory ***
[2024-04-26 17:00:38] total 702504
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc    462745 Apr 21 15:58 pilot3.tar.gz
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc      6720 Apr 21 16:10 queuedata.json
[2024-04-26 17:00:38] -rwx------ 1 boinc boinc     32211 Apr 21 16:11 runpilot2-wrapper.sh
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc       100 Apr 26 13:53 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-26 17:00:38] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 13:53 run_atlas
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc       105 Apr 26 13:53 job.xml
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc      6662 Apr 26 13:53 init_data.xml
[2024-04-26 17:00:38] -rw-r--r-- 2 boinc boinc 520265395 Apr 26 13:53 EVNT.38207157._000010.pool.root.1
[2024-04-26 17:00:38] -rw-r--r-- 2 boinc boinc     17537 Apr 26 13:53 start_atlas.sh
[2024-04-26 17:00:38] drwxrwx--x 2 boinc boinc      4096 Apr 26 13:53 shared
[2024-04-26 17:00:38] -rw-r--r-- 2 boinc boinc    474824 Apr 26 13:53 input.tar.gz
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc         0 Apr 26 13:53 boinc_lockfile
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc      2645 Apr 26 13:53 pandaJob.out
[2024-04-26 17:00:38] -rw------- 1 boinc boinc       424 Apr 26 13:53 setup.sh.local
[2024-04-26 17:00:38] -rw------- 1 boinc boinc    997814 Apr 26 13:53 agis_schedconf.cvmfs.json
[2024-04-26 17:00:38] -rw------- 1 boinc boinc   1315307 Apr 26 13:53 cric_ddmendpoints.json
[2024-04-26 17:00:38] drwx------ 4 boinc boinc      4096 Apr 26 13:53 pilot3
[2024-04-26 17:00:38] -rw------- 1 boinc boinc 192864451 Apr 26 16:59 HITS.38207159._000232.pool.root.1
[2024-04-26 17:00:38] -rw------- 1 boinc boinc      1062 Apr 26 17:00 memory_monitor_summary.json
[2024-04-26 17:00:38] -rw------- 1 boinc boinc         0 Apr 26 17:00 agis_ddmendpoints.agis.ALL.json
[2024-04-26 17:00:38] -rw------- 1 boinc boinc    311265 Apr 26 17:00 log.38207159._000232.job.log.tgz.1
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc       531 Apr 26 17:00 boinc_task_state.xml
[2024-04-26 17:00:38] -rw------- 1 boinc boinc      7736 Apr 26 17:00 heartbeat.json
[2024-04-26 17:00:38] -rw------- 1 boinc boinc        95 Apr 26 17:00 pilot_heartbeat.json
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc        28 Apr 26 17:00 wrapper_checkpoint.txt
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc      8192 Apr 26 17:00 boinc_mmap_file
[2024-04-26 17:00:38] -rw------- 1 boinc boinc      4293 Apr 26 17:00 pilotlog.txt
[2024-04-26 17:00:38] -rw------- 1 boinc boinc   1062110 Apr 26 17:00 log.38207159._000232.job.log.1
[2024-04-26 17:00:38] -rw------- 1 boinc boinc       357 Apr 26 17:00 output.list
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc       620 Apr 26 17:00 runtime_log
[2024-04-26 17:00:38] -rw------- 1 boinc boinc   1392640 Apr 26 17:00 result.tar.gz
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc     11410 Apr 26 17:00 runtime_log.err
[2024-04-26 17:00:38] -rw------- 1 boinc boinc       657 Apr 26 17:00 elNODmY5mI5nsSi4apGgGQJmABFKDmABFKDmRLXKDmHlMKDmNMLaXo.diag
[2024-04-26 17:00:38] -rw-r--r-- 1 boinc boinc     20865 Apr 26 17:00 stderr.txt
[2024-04-26 17:00:38] HITS file was successfully produced:
[2024-04-26 17:00:38] -rw------- 1 boinc boinc 192864451 Apr 26 16:59 shared/HITS.pool.root.1
[2024-04-26 17:00:38]  *** Contents of shared directory: ***
[2024-04-26 17:00:38] total 698272
[2024-04-26 17:00:38] -rw-r--r-- 2 boinc boinc 520265395 Apr 26 13:53 ATLAS.root_0
[2024-04-26 17:00:38] -rw-r--r-- 2 boinc boinc     17537 Apr 26 13:53 start_atlas.sh
[2024-04-26 17:00:38] -rw-r--r-- 2 boinc boinc    474824 Apr 26 13:53 input.tar.gz
[2024-04-26 17:00:38] -rw------- 1 boinc boinc 192864451 Apr 26 16:59 HITS.pool.root.1
[2024-04-26 17:00:38] -rw------- 1 boinc boinc   1392640 Apr 26 17:00 result.tar.gz
17:00:40 (35957): run_atlas exited; CPU time 41396.699664
17:00:40 (35957): called boinc_finish(0)

</stderr_txt>
]]>

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