Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:55:42 (1748440): wrapper (7.7.26015): starting
17:55:42 (1748440): wrapper: running run_atlas (--nthreads 4)
[2024-04-28 17:55:42] Arguments: --nthreads 4
[2024-04-28 17:55:42] Threads: 4
[2024-04-28 17:55:42] Checking for CVMFS
[2024-04-28 17:55:42] No cvmfs_config command found, will try listing directly
[2024-04-28 17:55:42] CVMFS is ok
[2024-04-28 17:55:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-28 17:55:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-28 17:55:42] Further information can be found at the LHC@home message board.
[2024-04-28 17:55:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-28 17:55:42] Checking for apptainer binary...
[2024-04-28 17:55:42] which: no apptainer in ((null))
[2024-04-28 17:55:42] apptainer is not installed, using version from CVMFS
[2024-04-28 17:55:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-28 17:55:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot80/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-04-28 17:55:43] apptainer works
[2024-04-28 17:55:43] Set ATHENA_PROC_NUMBER=4
[2024-04-28 17:55:43] Set ATHENA_CORE_NUMBER=4
[2024-04-28 17:55:43] Starting ATLAS job with PandaID=6182001901
[2024-04-28 17:55:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot80/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-28 20:22:03]  *** The last 200 lines of the pilot log: ***
[2024-04-28 20:22:03]  ddmendpoint=NDGF-T1_DATADISK
[2024-04-28 20:22:03]  direct_access_lan=False
[2024-04-28 20:22:03]  direct_access_wan=False
[2024-04-28 20:22:03]  domain=
[2024-04-28 20:22:03]  filesize=295704
[2024-04-28 20:22:03]  filetype=log
[2024-04-28 20:22:03]  guid=31ec465a-a805-4d21-99cd-d1ace3c15234
[2024-04-28 20:22:03]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-28 20:22:03]  is_tar=False
[2024-04-28 20:22:03]  lfn=log.38106738._013827.job.log.tgz.1
[2024-04-28 20:22:03]  mtime=0
[2024-04-28 20:22:03]  protocol_id=None
[2024-04-28 20:22:03]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-28 20:22:03]  replicas=None
[2024-04-28 20:22:03]  scope=mc23_13p6TeV
[2024-04-28 20:22:03]  status=None
[2024-04-28 20:22:03]  status_code=0
[2024-04-28 20:22:03]  storage_token=
[2024-04-28 20:22:03]  surl=/scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6182001901/log.38106738._013827.job.log.tgz.1
[2024-04-28 20:22:03]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/27/log.38106738._013827.job.log.tgz.1
[2024-04-28 20:22:03]  workdir=None
[2024-04-28 20:22:03] ]
[2024-04-28 20:22:03] 2024-04-28 18:21:41,275 | INFO     | transferring file log.38106738._013827.job.log.tgz.1 from /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6182001901/log.38106738._013827.job.log.tgz.1 to /scratch/b
[2024-04-28 20:22:03] 2024-04-28 18:21:41,275 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6182001901/log.38106738._013827.job.log.tgz.1 /scratch/boinc/var/slot80/slots/0/lo
[2024-04-28 20:22:03] 2024-04-28 18:21:41,304 | INFO     | adding to output.list: log.38106738._013827.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9e/27/log.38106738._013827.job.log.tg
[2024-04-28 20:22:03] 2024-04-28 18:21:41,305 | INFO     | summary of transferred files:
[2024-04-28 20:22:03] 2024-04-28 18:21:41,305 | INFO     |  -- lfn=log.38106738._013827.job.log.tgz.1, status_code=0, status=transferred
[2024-04-28 20:22:03] 2024-04-28 18:21:41,306 | INFO     | stage-out finished correctly
[2024-04-28 20:22:03] 2024-04-28 18:21:43,052 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-28 20:22:03] 2024-04-28 18:21:43,145 | INFO     | job 6182001901 has state=finished
[2024-04-28 20:22:03] 2024-04-28 18:21:43,145 | INFO     | preparing for final server update for job 6182001901 in state='finished'
[2024-04-28 20:22:03] 2024-04-28 18:21:43,146 | INFO     | this job has now completed (state=finished)
[2024-04-28 20:22:03] 2024-04-28 18:21:43,146 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-28 20:22:03] 2024-04-28 18:21:43,146 | INFO     | job 6182001901 has finished - writing final server update
[2024-04-28 20:22:03] 2024-04-28 18:21:43,146 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1664245/.job.ad'
[2024-04-28 20:22:03] 2024-04-28 18:21:43,146 | INFO     | total number of processed events: 400 (read)
[2024-04-28 20:22:03] 2024-04-28 18:21:43,154 | INFO     | executing command: lscpu
[2024-04-28 20:22:03] 2024-04-28 18:21:43,206 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-04-28 20:22:03] 2024-04-28 18:21:43,207 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-28 20:22:03] 2024-04-28 18:21:43,252 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-28 20:22:03] 2024-04-28 18:21:47,644 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-28 20:22:03] 2024-04-28 18:21:47,649 | INFO     | using path: /scratch/boinc/var/slot80/slots/0/PanDA_Pilot-6182001901/memory_monitor_summary.json (trf name=prmon)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,651 | INFO     | extracted standard info from prmon json
[2024-04-28 20:22:03] 2024-04-28 18:21:47,651 | INFO     | extracted standard memory fields from prmon json
[2024-04-28 20:22:03] 2024-04-28 18:21:47,652 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-28 20:22:03] 2024-04-28 18:21:47,652 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-28 20:22:03] 2024-04-28 18:21:47,656 | INFO     | fitting pss+swap vs Time
[2024-04-28 20:22:03] 2024-04-28 18:21:47,659 | INFO     | current chi2=4.068966333843867 (change=0.14100142226655663 %)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,659 | INFO     | right removable region: 137
[2024-04-28 20:22:03] 2024-04-28 18:21:47,660 | INFO     | current chi2=1.5788719808044585 (change=61.251934287538525 %)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,661 | INFO     | current chi2=0.052290224016191295 (change=96.68812768533971 %)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,661 | INFO     | current chi2=0.0008154483487414452 (change=98.44053383957785 %)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,661 | INFO     | current chi2=0.0005812238202838365 (change=28.723404593204283 %)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,662 | INFO     | current chi2=0.00019616129392998778 (change=66.25030030011608 %)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,662 | INFO     | current chi2=0.0001719790271404184 (change=12.327746368863316 %)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,662 | INFO     | left removable region: 60
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | current memory leak: 1.46 B/s (using 77 data points, chi2=0.00)
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | ..............................
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . Timing measurements:
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . get job = 0 s
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . initial setup = 1 s
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . payload setup = 9 s
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . stage-in = 0 s
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . payload execution = 8711 s
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . stage-out = 0 s
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | . log creation = 0 s
[2024-04-28 20:22:03] 2024-04-28 18:21:47,663 | INFO     | ..............................
[2024-04-28 20:22:03] 2024-04-28 18:21:47,851 | WARNING  | process 1763197 is no longer using CPU - aborting
[2024-04-28 20:22:03] 2024-04-28 18:21:47,852 | INFO     | aborting job monitoring since job object (job id=6182001901) has expired
[2024-04-28 20:22:03] 2024-04-28 18:21:48,186 | INFO     | 
[2024-04-28 20:22:03] 2024-04-28 18:21:48,186 | INFO     | job summary report
[2024-04-28 20:22:03] 2024-04-28 18:21:48,186 | INFO     | --------------------------------------------------
[2024-04-28 20:22:03] 2024-04-28 18:21:48,186 | INFO     | PanDA job id: 6182001901
[2024-04-28 20:22:03] 2024-04-28 18:21:48,186 | INFO     | task id: 38106738
[2024-04-28 20:22:03] 2024-04-28 18:21:48,186 | INFO     | errors: (none)
[2024-04-28 20:22:03] 2024-04-28 18:21:48,186 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | pilot state: finished 
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | transexitcode: 0
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | exeerrorcode: 0
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | exeerrordiag: 
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | exitcode: 0
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | exitmsg: OK
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | cpuconsumptiontime: 32163 s
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | nevents: 400
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | neventsw: 0
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | pid: 1763197
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | pgrp: 1763197
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | corecount: 4
[2024-04-28 20:22:03] 2024-04-28 18:21:48,187 | INFO     | event service: False
[2024-04-28 20:22:03] 2024-04-28 18:21:48,188 | INFO     | sizes: {0: 2374717, 1: 2375652, 8: 2375858, 12: 2375886, 8723: 2403869, 8724: 2403868, 8725: 2413034, 8727: 2413090, 8732: 2413260}
[2024-04-28 20:22:03] 2024-04-28 18:21:48,188 | INFO     | --------------------------------------------------
[2024-04-28 20:22:03] 2024-04-28 18:21:48,188 | INFO     | 
[2024-04-28 20:22:03] 2024-04-28 18:21:48,188 | INFO     | executing command: ls -lF /scratch/boinc/var/slot80/slots/0
[2024-04-28 20:22:03] 2024-04-28 18:21:48,215 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,215 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,215 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,215 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,216 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,217 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-28 20:22:03] 2024-04-28 18:21:48,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,217 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-28 20:22:03] 2024-04-28 18:21:48,217 | INFO     | job 6182001901 has completed (purged errors)
[2024-04-28 20:22:03] 2024-04-28 18:21:48,217 | INFO     | overall cleanup function is called
[2024-04-28 20:22:03] 2024-04-28 18:21:49,225 | INFO     | --- collectZombieJob: --- 10, [1763197]
[2024-04-28 20:22:03] 2024-04-28 18:21:49,225 | INFO     | zombie collector waiting for pid 1763197
[2024-04-28 20:22:03] 2024-04-28 18:21:49,225 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-28 20:22:03] 2024-04-28 18:21:50,230 | INFO     | collected zombie processes
[2024-04-28 20:22:03] 2024-04-28 18:21:50,230 | INFO     | will now attempt to kill all subprocesses of pid=1763197
[2024-04-28 20:22:03] 2024-04-28 18:21:50,430 | INFO     | process IDs to be killed: [1763197] (in reverse order)
[2024-04-28 20:22:03] 2024-04-28 18:21:50,595 | WARNING  | found no corresponding commands to process id(s)
[2024-04-28 20:22:03] 2024-04-28 18:21:50,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-28 20:22:03] 2024-04-28 18:21:50,609 | INFO     | did not find any defunct processes belonging to 1763197
[2024-04-28 20:22:03] 2024-04-28 18:21:50,618 | INFO     | did not find any defunct processes belonging to 1763197
[2024-04-28 20:22:03] 2024-04-28 18:21:50,618 | INFO     | ready for new job
[2024-04-28 20:22:03] 2024-04-28 18:21:50,618 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-28 20:22:03] 2024-04-28 18:21:50,620 | INFO     | *************************************
[2024-04-28 20:22:03] 2024-04-28 18:21:50,620 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-28 20:22:03] 2024-04-28 18:21:50,620 | INFO     | *************************************
[2024-04-28 20:22:03] 2024-04-28 18:21:50,620 | INFO     | 
[2024-04-28 20:22:03] 2024-04-28 18:21:50,625 | INFO     | architecture information:
[2024-04-28 20:22:03] 2024-04-28 18:21:50,625 | INFO     | executing command: cat /etc/os-release
[2024-04-28 20:22:03] 2024-04-28 18:21:50,642 | INFO     | cat /etc/os-release:
[2024-04-28 20:22:03] NAME="CentOS Linux"
[2024-04-28 20:22:03] VERSION="7 (Core)"
[2024-04-28 20:22:03] ID="centos"
[2024-04-28 20:22:03] ID_LIKE="rhel fedora"
[2024-04-28 20:22:03] VERSION_ID="7"
[2024-04-28 20:22:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-28 20:22:03] ANSI_COLOR="0;31"
[2024-04-28 20:22:03] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-28 20:22:03] HOME_URL="https://www.centos.org/"
[2024-04-28 20:22:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-28 20:22:03] 
[2024-04-28 20:22:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-28 20:22:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-28 20:22:03] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-28 20:22:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-28 20:22:03] 
[2024-04-28 20:22:03] 2024-04-28 18:21:50,642 | INFO     | *************************************
[2024-04-28 20:22:03] 2024-04-28 18:21:51,145 | INFO     | executing command: df -mP /scratch/boinc/var/slot80/slots/0
[2024-04-28 20:22:03] 2024-04-28 18:21:51,168 | INFO     | sufficient remaining disk space (3155634946048 B)
[2024-04-28 20:22:03] 2024-04-28 18:21:51,168 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-28 20:22:03] 2024-04-28 18:21:51,168 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-28 20:22:03] 2024-04-28 18:21:51,168 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-28 20:22:03] 2024-04-28 18:21:51,169 | INFO     | found 0 job(s) in 20 queues
[2024-04-28 20:22:03] 2024-04-28 18:21:51,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-28 20:22:03] 2024-04-28 18:21:51,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-28 20:22:03] 2024-04-28 18:21:51,309 | INFO     | all job control threads have been joined
[2024-04-28 20:22:03] 2024-04-28 18:21:51,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-28 20:22:03] 2024-04-28 18:21:51,360 | INFO     | aborting loop
[2024-04-28 20:22:03] 2024-04-28 18:21:51,408 | INFO     | all payload control threads have been joined
[2024-04-28 20:22:03] 2024-04-28 18:21:51,420 | INFO     | all data control threads have been joined
[2024-04-28 20:22:03] 2024-04-28 18:21:51,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-28 20:22:03] 2024-04-28 18:21:52,173 | INFO     | [job] retrieve thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,314 | INFO     | [job] control thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,344 | INFO     | [job] validate thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,365 | INFO     | [job] job monitor thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,414 | INFO     | [payload] control thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,425 | INFO     | [data] control thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,600 | INFO     | [payload] execute_payloads thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,662 | INFO     | [job] create_data_payload thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,664 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:52,738 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-28 20:22:03] 2024-04-28 18:21:52,776 | INFO     | [payload] validate_pre thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:53,165 | INFO     | [data] copytool_in thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:53,524 | INFO     | [payload] validate_post thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:53,524 | INFO     | [payload] failed_post thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:53,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-28 20:22:03] 2024-04-28 18:21:53,743 | INFO     | [job] queue monitor thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:53,944 | INFO     | [data] copytool_out thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:57,664 | INFO     | [data] queue_monitor thread has finished
[2024-04-28 20:22:03] 2024-04-28 18:21:57,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47538406777920)>', '<ExcThread(monitor, started 47539048941312)>']
[2024-04-28 20:22:03] 2024-04-28 18:21:58,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-28 20:22:03] 2024-04-28 18:21:58,203 | INFO     | [monitor] control thread has ended
[2024-04-28 20:22:03] 2024-04-28 18:22:02,775 | INFO     | all workflow threads have been joined
[2024-04-28 20:22:03] 2024-04-28 18:22:02,775 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-28 20:22:03] 2024-04-28 18:22:02,775 | INFO     | traces error code: 0
[2024-04-28 20:22:03] 2024-04-28 18:22:02,775 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-28 20:22:03] 2024-04-28 18:22:02,877 [wrapper] ==== pilot stdout END ====
[2024-04-28 20:22:03] 2024-04-28 18:22:02,880 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-28 20:22:03] 2024-04-28 18:22:02,881 [wrapper] pilotpid: 1753154
[2024-04-28 20:22:03] 2024-04-28 18:22:02,884 [wrapper] Pilot exit status: 0
[2024-04-28 20:22:03] 2024-04-28 18:22:02,891 [wrapper] pandaids: 6182001901
[2024-04-28 20:22:03] 2024-04-28 18:22:02,976 [wrapper] cleanup: SIGTERM to supervisor_pilot 2675958 1753155
[2024-04-28 20:22:03] 2024-04-28 18:22:02,978 [wrapper] Test setup, not cleaning
[2024-04-28 20:22:03] 2024-04-28 18:22:02,979 [wrapper] ==== wrapper stdout END ====
[2024-04-28 20:22:03] 2024-04-28 18:22:02,980 [wrapper] ==== wrapper stderr END ====
[2024-04-28 20:22:03] 2024-04-28 18:22:02,983 [wrapper] apfmon messages muted
[2024-04-28 20:22:03]  *** Error codes and diagnostics ***
[2024-04-28 20:22:03]     "exeErrorCode": 0,
[2024-04-28 20:22:03]     "exeErrorDiag": "",
[2024-04-28 20:22:03]     "pilotErrorCode": 0,
[2024-04-28 20:22:03]     "pilotErrorDiag": "",
[2024-04-28 20:22:03]  *** Listing of results directory ***
[2024-04-28 20:22:03] total 711692
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc    462745 Apr 21 07:26 pilot3.tar.gz
[2024-04-28 20:22:03] -rwx------ 1 boinc boinc     32211 Apr 21 07:57 runpilot2-wrapper.sh
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc      6720 Apr 21 07:57 queuedata.json
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc       100 Apr 28 17:55 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-28 20:22:03] -rwxr-xr-x 1 boinc boinc      7986 Apr 28 17:55 run_atlas
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc       105 Apr 28 17:55 job.xml
[2024-04-28 20:22:03] -rw-r--r-- 2 boinc boinc 522453206 Apr 28 17:55 EVNT.38106735._000425.pool.root.1
[2024-04-28 20:22:03] -rw-r--r-- 2 boinc boinc     17537 Apr 28 17:55 start_atlas.sh
[2024-04-28 20:22:03] drwxrwx--x 2 boinc boinc      4096 Apr 28 17:55 shared
[2024-04-28 20:22:03] -rw-r--r-- 2 boinc boinc    474791 Apr 28 17:55 input.tar.gz
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc      6644 Apr 28 17:55 init_data.xml
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc         0 Apr 28 17:55 boinc_lockfile
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc      2543 Apr 28 17:55 pandaJob.out
[2024-04-28 20:22:03] -rw------- 1 boinc boinc       424 Apr 28 17:55 setup.sh.local
[2024-04-28 20:22:03] -rw------- 1 boinc boinc   1000586 Apr 28 17:55 agis_schedconf.cvmfs.json
[2024-04-28 20:22:03] -rw------- 1 boinc boinc         0 Apr 28 17:55 agis_ddmendpoints.agis.ALL.json
[2024-04-28 20:22:03] -rw------- 1 boinc boinc   1315307 Apr 28 17:55 cric_ddmendpoints.json
[2024-04-28 20:22:03] drwx------ 4 boinc boinc      4096 Apr 28 17:55 pilot3
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc       530 Apr 28 20:21 boinc_task_state.xml
[2024-04-28 20:22:03] -rw------- 1 boinc boinc 200568260 Apr 28 20:21 HITS.38106738._013827.pool.root.1
[2024-04-28 20:22:03] -rw------- 1 boinc boinc        95 Apr 28 20:21 pilot_heartbeat.json
[2024-04-28 20:22:03] -rw------- 1 boinc boinc      1042 Apr 28 20:21 memory_monitor_summary.json
[2024-04-28 20:22:03] -rw------- 1 boinc boinc    295704 Apr 28 20:21 log.38106738._013827.job.log.tgz.1
[2024-04-28 20:22:03] -rw------- 1 boinc boinc      7690 Apr 28 20:21 heartbeat.json
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc      8192 Apr 28 20:22 boinc_mmap_file
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc        27 Apr 28 20:22 wrapper_checkpoint.txt
[2024-04-28 20:22:03] -rw------- 1 boinc boinc      4345 Apr 28 20:22 pilotlog.txt
[2024-04-28 20:22:03] -rw------- 1 boinc boinc    834887 Apr 28 20:22 log.38106738._013827.job.log.1
[2024-04-28 20:22:03] -rw------- 1 boinc boinc       357 Apr 28 20:22 output.list
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc       620 Apr 28 20:22 runtime_log
[2024-04-28 20:22:03] -rw------- 1 boinc boinc   1146880 Apr 28 20:22 result.tar.gz
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc     11409 Apr 28 20:22 runtime_log.err
[2024-04-28 20:22:03] -rw------- 1 boinc boinc       656 Apr 28 20:22 E88KDmsNfI5np2BDcpmwOghnABFKDmABFKDmJjxZDmnsGKDmZfcrkm.diag
[2024-04-28 20:22:03] -rw-r--r-- 1 boinc boinc     21014 Apr 28 20:22 stderr.txt
[2024-04-28 20:22:03] HITS file was successfully produced:
[2024-04-28 20:22:03] -rw------- 1 boinc boinc 200568260 Apr 28 20:21 shared/HITS.pool.root.1
[2024-04-28 20:22:03]  *** Contents of shared directory: ***
[2024-04-28 20:22:03] total 707692
[2024-04-28 20:22:03] -rw-r--r-- 2 boinc boinc 522453206 Apr 28 17:55 ATLAS.root_0
[2024-04-28 20:22:03] -rw-r--r-- 2 boinc boinc     17537 Apr 28 17:55 start_atlas.sh
[2024-04-28 20:22:03] -rw-r--r-- 2 boinc boinc    474791 Apr 28 17:55 input.tar.gz
[2024-04-28 20:22:03] -rw------- 1 boinc boinc 200568260 Apr 28 20:21 HITS.pool.root.1
[2024-04-28 20:22:03] -rw------- 1 boinc boinc   1146880 Apr 28 20:22 result.tar.gz
20:22:05 (1748440): run_atlas exited; CPU time 31970.663371
20:22:05 (1748440): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN