Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:04:09 (3466374): wrapper (7.7.26015): starting
10:04:09 (3466374): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 10:04:10] Arguments: --nthreads 4
[2024-04-26 10:04:10] Threads: 4
[2024-04-26 10:04:10] Checking for CVMFS
[2024-04-26 10:04:10] No cvmfs_config command found, will try listing directly
[2024-04-26 10:04:10] CVMFS is ok
[2024-04-26 10:04:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 10:04:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 10:04:10] Further information can be found at the LHC@home message board.
[2024-04-26 10:04:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 10:04:10] Checking for apptainer binary...
[2024-04-26 10:04:10] which: no apptainer in ((null))
[2024-04-26 10:04:10] apptainer is not installed, using version from CVMFS
[2024-04-26 10:04:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 10:04:11] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2024-04-26 10:04:11] apptainer works
[2024-04-26 10:04:11] Set ATHENA_PROC_NUMBER=4
[2024-04-26 10:04:11] Set ATHENA_CORE_NUMBER=4
[2024-04-26 10:04:11] Starting ATLAS job with PandaID=6182292125
[2024-04-26 10:04:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-26 13:53:28]  *** The last 200 lines of the pilot log: ***
[2024-04-26 13:53:28]  ddm_activity=['write_lan', 'write_wan']
[2024-04-26 13:53:28]  ddmendpoint=NDGF-T1_DATADISK
[2024-04-26 13:53:28]  direct_access_lan=False
[2024-04-26 13:53:28]  direct_access_wan=False
[2024-04-26 13:53:28]  domain=
[2024-04-26 13:53:28]  filesize=322276
[2024-04-26 13:53:28]  filetype=log
[2024-04-26 13:53:28]  guid=70f29850-661d-47e2-88f1-cf3a1303fe16
[2024-04-26 13:53:28]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-26 13:53:28]  is_tar=False
[2024-04-26 13:53:28]  lfn=log.38203151._008227.job.log.tgz.1
[2024-04-26 13:53:28]  mtime=0
[2024-04-26 13:53:28]  protocol_id=None
[2024-04-26 13:53:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-26 13:53:28]  replicas=None
[2024-04-26 13:53:28]  scope=mc23_13p6TeV
[2024-04-26 13:53:28]  status=None
[2024-04-26 13:53:28]  status_code=0
[2024-04-26 13:53:28]  storage_token=
[2024-04-26 13:53:28]  surl=/scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182292125/log.38203151._008227.job.log.tgz.1
[2024-04-26 13:53:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/11/log.38203151._008227.job.log.tgz.1
[2024-04-26 13:53:28]  workdir=None
[2024-04-26 13:53:28] ]
[2024-04-26 13:53:28] 2024-04-26 11:53:00,036 | INFO     | transferring file log.38203151._008227.job.log.tgz.1 from /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182292125/log.38203151._008227.job.log.tgz.1 to /scratch/b
[2024-04-26 13:53:28] 2024-04-26 11:53:00,036 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182292125/log.38203151._008227.job.log.tgz.1 /scratch/boinc/var/slot48/slots/0/lo
[2024-04-26 13:53:28] 2024-04-26 11:53:00,053 | INFO     | adding to output.list: log.38203151._008227.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f2/11/log.38203151._008227.job.log.tg
[2024-04-26 13:53:28] 2024-04-26 11:53:00,053 | INFO     | summary of transferred files:
[2024-04-26 13:53:28] 2024-04-26 11:53:00,054 | INFO     |  -- lfn=log.38203151._008227.job.log.tgz.1, status_code=0, status=transferred
[2024-04-26 13:53:28] 2024-04-26 11:53:00,054 | INFO     | stage-out finished correctly
[2024-04-26 13:53:28] 2024-04-26 11:53:00,546 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-26 13:53:28] 2024-04-26 11:53:03,539 | INFO     | job 6182292125 has state=finished
[2024-04-26 13:53:28] 2024-04-26 11:53:03,539 | INFO     | preparing for final server update for job 6182292125 in state='finished'
[2024-04-26 13:53:28] 2024-04-26 11:53:03,539 | INFO     | this job has now completed (state=finished)
[2024-04-26 13:53:28] 2024-04-26 11:53:03,539 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-26 13:53:28] 2024-04-26 11:53:03,540 | INFO     | job 6182292125 has finished - writing final server update
[2024-04-26 13:53:28] 2024-04-26 11:53:03,540 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_790524/.job.ad'
[2024-04-26 13:53:28] 2024-04-26 11:53:03,540 | INFO     | total number of processed events: 400 (read)
[2024-04-26 13:53:28] 2024-04-26 11:53:03,544 | INFO     | executing command: lscpu
[2024-04-26 13:53:28] 2024-04-26 11:53:03,587 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-04-26 13:53:28] 2024-04-26 11:53:03,587 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-26 13:53:28] 2024-04-26 11:53:03,623 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-26 13:53:28] 2024-04-26 11:53:06,505 | INFO     | 13720s have passed since pilot start
[2024-04-26 13:53:28] 2024-04-26 11:53:06,686 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-26 13:53:28] 2024-04-26 11:53:06,687 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6182292125/memory_monitor_summary.json (trf name=prmon)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,692 | INFO     | extracted standard info from prmon json
[2024-04-26 13:53:28] 2024-04-26 11:53:06,693 | INFO     | extracted standard memory fields from prmon json
[2024-04-26 13:53:28] 2024-04-26 11:53:06,694 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-26 13:53:28] 2024-04-26 11:53:06,694 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-26 13:53:28] 2024-04-26 11:53:06,697 | INFO     | fitting pss+swap vs Time
[2024-04-26 13:53:28] 2024-04-26 11:53:06,699 | INFO     | current chi2=4.209207267808821 (change=16.082241930021578 %)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,699 | INFO     | right removable region: 219
[2024-04-26 13:53:28] 2024-04-26 11:53:06,700 | INFO     | current chi2=2.4405518377621296 (change=51.34341797685366 %)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,701 | INFO     | current chi2=0.9225724436351108 (change=62.19820331777643 %)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,702 | INFO     | current chi2=0.8466316834853778 (change=8.231414310459135 %)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,702 | INFO     | left removable region: 30
[2024-04-26 13:53:28] 2024-04-26 11:53:06,703 | INFO     | current memory leak: 2.62 B/s (using 189 data points, chi2=0.00)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | ..............................
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . Timing measurements:
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . get job = 0 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . initial setup = 1 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . payload setup = 8 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . stage-in = 0 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . payload execution = 13678 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . stage-out = 0 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | . log creation = 0 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,704 | INFO     | ..............................
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | 
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | job summary report
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | --------------------------------------------------
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | PanDA job id: 6182292125
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | task id: 38203151
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | errors: (none)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-26 13:53:28] 2024-04-26 11:53:06,763 | INFO     | pilot state: finished 
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | transexitcode: 0
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | exeerrorcode: 0
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | exeerrordiag: 
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | exitcode: 0
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | exitmsg: OK
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | cpuconsumptiontime: 51872 s
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | nevents: 400
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | neventsw: 0
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | pid: 3478001
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | pgrp: 3478001
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | corecount: 4
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | event service: False
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | sizes: {0: 2375593, 9: 2375799, 11: 2375827, 13691: 2406147, 13692: 2415129, 13693: 2415185, 13699: 2415483}
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | --------------------------------------------------
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | 
[2024-04-26 13:53:28] 2024-04-26 11:53:06,764 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2024-04-26 13:53:28] 2024-04-26 11:53:06,822 | WARNING  | process 3478001 is no longer using CPU - aborting
[2024-04-26 13:53:28] 2024-04-26 11:53:06,822 | INFO     | aborting job monitoring since job object (job id=6182292125) has expired
[2024-04-26 13:53:28] 2024-04-26 11:53:06,841 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,842 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | job 6182292125 has completed (purged errors)
[2024-04-26 13:53:28] 2024-04-26 11:53:06,843 | INFO     | overall cleanup function is called
[2024-04-26 13:53:28] 2024-04-26 11:53:07,850 | INFO     | --- collectZombieJob: --- 10, [3478001]
[2024-04-26 13:53:28] 2024-04-26 11:53:07,851 | INFO     | zombie collector waiting for pid 3478001
[2024-04-26 13:53:28] 2024-04-26 11:53:07,851 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-26 13:53:28] 2024-04-26 11:53:08,855 | INFO     | collected zombie processes
[2024-04-26 13:53:28] 2024-04-26 11:53:08,856 | INFO     | will now attempt to kill all subprocesses of pid=3478001
[2024-04-26 13:53:28] 2024-04-26 11:53:09,002 | INFO     | process IDs to be killed: [3478001] (in reverse order)
[2024-04-26 13:53:28] 2024-04-26 11:53:09,091 | WARNING  | found no corresponding commands to process id(s)
[2024-04-26 13:53:28] 2024-04-26 11:53:09,091 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-26 13:53:28] 2024-04-26 11:53:09,097 | INFO     | did not find any defunct processes belonging to 3478001
[2024-04-26 13:53:28] 2024-04-26 11:53:09,102 | INFO     | did not find any defunct processes belonging to 3478001
[2024-04-26 13:53:28] 2024-04-26 11:53:09,102 | INFO     | ready for new job
[2024-04-26 13:53:28] 2024-04-26 11:53:09,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-26 13:53:28] 2024-04-26 11:53:09,104 | INFO     | *************************************
[2024-04-26 13:53:28] 2024-04-26 11:53:09,104 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-26 13:53:28] 2024-04-26 11:53:09,104 | INFO     | *************************************
[2024-04-26 13:53:28] 2024-04-26 11:53:09,104 | INFO     | 
[2024-04-26 13:53:28] 2024-04-26 11:53:09,107 | INFO     | architecture information:
[2024-04-26 13:53:28] 2024-04-26 11:53:09,107 | INFO     | executing command: cat /etc/os-release
[2024-04-26 13:53:28] 2024-04-26 11:53:09,119 | INFO     | cat /etc/os-release:
[2024-04-26 13:53:28] NAME="CentOS Linux"
[2024-04-26 13:53:28] VERSION="7 (Core)"
[2024-04-26 13:53:28] ID="centos"
[2024-04-26 13:53:28] ID_LIKE="rhel fedora"
[2024-04-26 13:53:28] VERSION_ID="7"
[2024-04-26 13:53:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-26 13:53:28] ANSI_COLOR="0;31"
[2024-04-26 13:53:28] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-26 13:53:28] HOME_URL="https://www.centos.org/"
[2024-04-26 13:53:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-26 13:53:28] 
[2024-04-26 13:53:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-26 13:53:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-26 13:53:28] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-26 13:53:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-26 13:53:28] 
[2024-04-26 13:53:28] 2024-04-26 11:53:09,119 | INFO     | *************************************
[2024-04-26 13:53:28] 2024-04-26 11:53:09,622 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2024-04-26 13:53:28] 2024-04-26 11:53:09,644 | INFO     | sufficient remaining disk space (631521673216 B)
[2024-04-26 13:53:28] 2024-04-26 11:53:09,644 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-26 13:53:28] 2024-04-26 11:53:09,644 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-26 13:53:28] 2024-04-26 11:53:09,644 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-26 13:53:28] 2024-04-26 11:53:09,644 | INFO     | found 0 job(s) in 20 queues
[2024-04-26 13:53:28] 2024-04-26 11:53:09,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-26 13:53:28] 2024-04-26 11:53:09,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-26 13:53:28] 2024-04-26 11:53:10,289 | INFO     | all data control threads have been joined
[2024-04-26 13:53:28] 2024-04-26 11:53:10,330 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-26 13:53:28] 2024-04-26 11:53:10,331 | INFO     | aborting loop
[2024-04-26 13:53:28] 2024-04-26 11:53:10,591 | INFO     | all payload control threads have been joined
[2024-04-26 13:53:28] 2024-04-26 11:53:10,621 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-26 13:53:28] 2024-04-26 11:53:10,636 | INFO     | all job control threads have been joined
[2024-04-26 13:53:28] 2024-04-26 11:53:10,645 | INFO     | [job] retrieve thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:10,656 | INFO     | [data] copytool_in thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:10,771 | INFO     | [job] validate thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:10,894 | INFO     | [job] create_data_payload thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-26 13:53:28] 2024-04-26 11:53:11,205 | INFO     | [payload] validate_pre thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,295 | INFO     | [data] control thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,335 | INFO     | [job] job monitor thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,518 | INFO     | [payload] validate_post thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,596 | INFO     | [payload] control thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,640 | INFO     | [job] control thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,772 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-26 13:53:28] 2024-04-26 11:53:11,818 | INFO     | [payload] execute_payloads thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:11,970 | INFO     | [payload] failed_post thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:12,626 | INFO     | [data] copytool_out thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:12,774 | INFO     | [job] queue monitor thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:15,108 | INFO     | [data] queue_monitor thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:19,831 | INFO     | job.realtimelogging is not enabled
[2024-04-26 13:53:28] 2024-04-26 11:53:20,836 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-26 13:53:28] 2024-04-26 11:53:22,190 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47800945632320)>', '<ExcThread(monitor, started 47801316685568)>']
[2024-04-26 13:53:28] 2024-04-26 11:53:22,709 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-26 13:53:28] 2024-04-26 11:53:22,710 | INFO     | [monitor] control thread has ended
[2024-04-26 13:53:28] 2024-04-26 11:53:27,215 | INFO     | all workflow threads have been joined
[2024-04-26 13:53:28] 2024-04-26 11:53:27,216 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-26 13:53:28] 2024-04-26 11:53:27,216 | INFO     | traces error code: 0
[2024-04-26 13:53:28] 2024-04-26 11:53:27,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-26 13:53:28] 2024-04-26 11:53:27,281 [wrapper] ==== pilot stdout END ====
[2024-04-26 13:53:28] 2024-04-26 11:53:27,283 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-26 13:53:28] 2024-04-26 11:53:27,285 [wrapper] pilotpid: 3470812
[2024-04-26 13:53:28] 2024-04-26 11:53:27,288 [wrapper] Pilot exit status: 0
[2024-04-26 13:53:28] 2024-04-26 11:53:27,296 [wrapper] pandaids: 6182292125
[2024-04-26 13:53:28] 2024-04-26 11:53:27,351 [wrapper] cleanup: SIGTERM to supervisor_pilot   28689 3470813
[2024-04-26 13:53:28] 2024-04-26 11:53:27,353 [wrapper] Test setup, not cleaning
[2024-04-26 13:53:28] 2024-04-26 11:53:27,355 [wrapper] ==== wrapper stdout END ====
[2024-04-26 13:53:28] 2024-04-26 11:53:27,357 [wrapper] ==== wrapper stderr END ====
[2024-04-26 13:53:28] 2024-04-26 11:53:27,360 [wrapper] apfmon messages muted
[2024-04-26 13:53:28]  *** Error codes and diagnostics ***
[2024-04-26 13:53:28]     "exeErrorCode": 0,
[2024-04-26 13:53:28]     "exeErrorDiag": "",
[2024-04-26 13:53:28]     "pilotErrorCode": 0,
[2024-04-26 13:53:28]     "pilotErrorDiag": "",
[2024-04-26 13:53:28]  *** Listing of results directory ***
[2024-04-26 13:53:28] total 716156
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc    462745 Apr 21 12:37 pilot3.tar.gz
[2024-04-26 13:53:28] -rwx------ 1 boinc boinc     32211 Apr 21 12:40 runpilot2-wrapper.sh
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc      6720 Apr 21 12:40 queuedata.json
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc       100 Apr 26 10:04 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-26 13:53:28] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 10:04 run_atlas
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc       105 Apr 26 10:04 job.xml
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc      6662 Apr 26 10:04 init_data.xml
[2024-04-26 13:53:28] -rw-r--r-- 2 boinc boinc 521994007 Apr 26 10:04 EVNT.38203149._000322.pool.root.1
[2024-04-26 13:53:28] drwxrwx--x 2 boinc boinc      4096 Apr 26 10:04 shared
[2024-04-26 13:53:28] -rw-r--r-- 2 boinc boinc    474784 Apr 26 10:04 input.tar.gz
[2024-04-26 13:53:28] -rw-r--r-- 2 boinc boinc     17537 Apr 26 10:04 start_atlas.sh
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc         0 Apr 26 10:04 boinc_lockfile
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc      2554 Apr 26 10:04 pandaJob.out
[2024-04-26 13:53:28] -rw------- 1 boinc boinc       424 Apr 26 10:04 setup.sh.local
[2024-04-26 13:53:28] -rw------- 1 boinc boinc    993582 Apr 26 10:04 agis_schedconf.cvmfs.json
[2024-04-26 13:53:28] -rw------- 1 boinc boinc   1315307 Apr 26 10:04 cric_ddmendpoints.json
[2024-04-26 13:53:28] drwx------ 4 boinc boinc      4096 Apr 26 10:04 pilot3
[2024-04-26 13:53:28] -rw------- 1 boinc boinc 204640294 Apr 26 13:52 HITS.38203151._008227.pool.root.1
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc       532 Apr 26 13:52 boinc_task_state.xml
[2024-04-26 13:53:28] -rw------- 1 boinc boinc      1050 Apr 26 13:52 memory_monitor_summary.json
[2024-04-26 13:53:28] -rw------- 1 boinc boinc         0 Apr 26 13:52 agis_ddmendpoints.agis.ALL.json
[2024-04-26 13:53:28] -rw------- 1 boinc boinc    322276 Apr 26 13:52 log.38203151._008227.job.log.tgz.1
[2024-04-26 13:53:28] -rw------- 1 boinc boinc        95 Apr 26 13:53 pilot_heartbeat.json
[2024-04-26 13:53:28] -rw------- 1 boinc boinc      7734 Apr 26 13:53 heartbeat.json
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc      8192 Apr 26 13:53 boinc_mmap_file
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc        28 Apr 26 13:53 wrapper_checkpoint.txt
[2024-04-26 13:53:28] -rw------- 1 boinc boinc      4416 Apr 26 13:53 pilotlog.txt
[2024-04-26 13:53:28] -rw------- 1 boinc boinc   1291105 Apr 26 13:53 log.38203151._008227.job.log.1
[2024-04-26 13:53:28] -rw------- 1 boinc boinc       357 Apr 26 13:53 output.list
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc       620 Apr 26 13:53 runtime_log
[2024-04-26 13:53:28] -rw------- 1 boinc boinc   1628160 Apr 26 13:53 result.tar.gz
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc     11410 Apr 26 13:53 runtime_log.err
[2024-04-26 13:53:28] -rw------- 1 boinc boinc       657 Apr 26 13:53 JUZKDmQnjI5n9Rq4apoT9bVoABFKDmABFKDmtztZDm3OKKDmxvM5Om.diag
[2024-04-26 13:53:28] -rw-r--r-- 1 boinc boinc     20865 Apr 26 13:53 stderr.txt
[2024-04-26 13:53:28] HITS file was successfully produced:
[2024-04-26 13:53:28] -rw------- 1 boinc boinc 204640294 Apr 26 13:52 shared/HITS.pool.root.1
[2024-04-26 13:53:28]  *** Contents of shared directory: ***
[2024-04-26 13:53:28] total 711692
[2024-04-26 13:53:28] -rw-r--r-- 2 boinc boinc 521994007 Apr 26 10:04 ATLAS.root_0
[2024-04-26 13:53:28] -rw-r--r-- 2 boinc boinc    474784 Apr 26 10:04 input.tar.gz
[2024-04-26 13:53:28] -rw-r--r-- 2 boinc boinc     17537 Apr 26 10:04 start_atlas.sh
[2024-04-26 13:53:28] -rw------- 1 boinc boinc 204640294 Apr 26 13:52 HITS.pool.root.1
[2024-04-26 13:53:28] -rw------- 1 boinc boinc   1628160 Apr 26 13:53 result.tar.gz
13:53:30 (3466374): run_atlas exited; CPU time 51563.122704
13:53:30 (3466374): called boinc_finish(0)

</stderr_txt>
]]>

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