Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:18:26 (548090): wrapper (7.7.26015): starting
19:18:26 (548090): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 19:18:26] Arguments: --nthreads 4
[2024-04-26 19:18:26] Threads: 4
[2024-04-26 19:18:26] Checking for CVMFS
[2024-04-26 19:18:26] No cvmfs_config command found, will try listing directly
[2024-04-26 19:18:26] CVMFS is ok
[2024-04-26 19:18:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 19:18:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 19:18:26] Further information can be found at the LHC@home message board.
[2024-04-26 19:18:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 19:18:26] Checking for apptainer binary...
[2024-04-26 19:18:26] which: no apptainer in ((null))
[2024-04-26 19:18:26] apptainer is not installed, using version from CVMFS
[2024-04-26 19:18:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 19:18:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-04-26 19:18:27] apptainer works
[2024-04-26 19:18:27] Set ATHENA_PROC_NUMBER=4
[2024-04-26 19:18:27] Set ATHENA_CORE_NUMBER=4
[2024-04-26 19:18:27] Starting ATLAS job with PandaID=6182268179
[2024-04-26 19:18:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-26 23:04:02]  *** The last 200 lines of the pilot log: ***
[2024-04-26 23:04:02]  ddmendpoint=NDGF-T1_DATADISK
[2024-04-26 23:04:02]  direct_access_lan=False
[2024-04-26 23:04:02]  direct_access_wan=False
[2024-04-26 23:04:02]  domain=
[2024-04-26 23:04:02]  filesize=331435
[2024-04-26 23:04:02]  filetype=log
[2024-04-26 23:04:02]  guid=01c19211-b801-405e-bf29-5891fcff6e03
[2024-04-26 23:04:02]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-26 23:04:02]  is_tar=False
[2024-04-26 23:04:02]  lfn=log.38204263._001041.job.log.tgz.1
[2024-04-26 23:04:02]  mtime=0
[2024-04-26 23:04:02]  protocol_id=None
[2024-04-26 23:04:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-26 23:04:02]  replicas=None
[2024-04-26 23:04:02]  scope=mc23_13p6TeV
[2024-04-26 23:04:02]  status=None
[2024-04-26 23:04:02]  status_code=0
[2024-04-26 23:04:02]  storage_token=
[2024-04-26 23:04:02]  surl=/scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182268179/log.38204263._001041.job.log.tgz.1
[2024-04-26 23:04:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/a8/log.38204263._001041.job.log.tgz.1
[2024-04-26 23:04:02]  workdir=None
[2024-04-26 23:04:02] ]
[2024-04-26 23:04:02] 2024-04-26 21:03:40,858 | INFO     | transferring file log.38204263._001041.job.log.tgz.1 from /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182268179/log.38204263._001041.job.log.tgz.1 to /scratch/b
[2024-04-26 23:04:02] 2024-04-26 21:03:40,858 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182268179/log.38204263._001041.job.log.tgz.1 /scratch/boinc/var/slot20/slots/0/lo
[2024-04-26 23:04:02] 2024-04-26 21:03:40,873 | INFO     | adding to output.list: log.38204263._001041.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/a8/log.38204263._001041.job.log.tg
[2024-04-26 23:04:02] 2024-04-26 21:03:40,874 | INFO     | summary of transferred files:
[2024-04-26 23:04:02] 2024-04-26 21:03:40,874 | INFO     |  -- lfn=log.38204263._001041.job.log.tgz.1, status_code=0, status=transferred
[2024-04-26 23:04:02] 2024-04-26 21:03:40,875 | INFO     | stage-out finished correctly
[2024-04-26 23:04:02] 2024-04-26 21:03:40,959 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-26 23:04:02] 2024-04-26 21:03:42,142 | INFO     | monitor loop #1045: job 0:6182268179 is in state 'finished'
[2024-04-26 23:04:02] 2024-04-26 21:03:42,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-26 23:04:02] 2024-04-26 21:03:42,692 | INFO     | job 6182268179 has state=finished
[2024-04-26 23:04:02] 2024-04-26 21:03:42,692 | INFO     | preparing for final server update for job 6182268179 in state='finished'
[2024-04-26 23:04:02] 2024-04-26 21:03:42,693 | INFO     | this job has now completed (state=finished)
[2024-04-26 23:04:02] 2024-04-26 21:03:42,693 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-26 23:04:02] 2024-04-26 21:03:42,693 | INFO     | job 6182268179 has finished - writing final server update
[2024-04-26 23:04:02] 2024-04-26 21:03:42,694 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3296696/.job.ad'
[2024-04-26 23:04:02] 2024-04-26 21:03:42,694 | INFO     | total number of processed events: 400 (read)
[2024-04-26 23:04:02] 2024-04-26 21:03:42,697 | INFO     | executing command: lscpu
[2024-04-26 23:04:02] 2024-04-26 21:03:42,723 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-04-26 23:04:02] 2024-04-26 21:03:42,724 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-26 23:04:02] 2024-04-26 21:03:42,744 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-26 23:04:02] 2024-04-26 21:03:44,645 | INFO     | monitor loop #1046: job 0:6182268179 is in state 'finished'
[2024-04-26 23:04:02] 2024-04-26 21:03:44,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,468 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-26 23:04:02] 2024-04-26 21:03:45,468 | INFO     | using path: /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182268179/memory_monitor_summary.json (trf name=prmon)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,469 | INFO     | extracted standard info from prmon json
[2024-04-26 23:04:02] 2024-04-26 21:03:45,469 | INFO     | extracted standard memory fields from prmon json
[2024-04-26 23:04:02] 2024-04-26 21:03:45,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-26 23:04:02] 2024-04-26 21:03:45,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-26 23:04:02] 2024-04-26 21:03:45,472 | INFO     | fitting pss+swap vs Time
[2024-04-26 23:04:02] 2024-04-26 21:03:45,474 | INFO     | current chi2=4.21253545424393 (change=-0.017989213673428844 %)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,474 | INFO     | right removable region: 215
[2024-04-26 23:04:02] 2024-04-26 21:03:45,475 | INFO     | current chi2=1.6359342242590091 (change=61.15810694688053 %)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,476 | INFO     | current chi2=0.08403055900159796 (change=94.86345124666248 %)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,477 | INFO     | current chi2=0.002374648199244163 (change=97.17406592618406 %)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,478 | INFO     | current chi2=0.0020964928488569046 (change=11.713539313983164 %)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,478 | INFO     | left removable region: 40
[2024-04-26 23:04:02] 2024-04-26 21:03:45,479 | INFO     | current memory leak: 1.34 B/s (using 175 data points, chi2=0.00)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,479 | INFO     | ..............................
[2024-04-26 23:04:02] 2024-04-26 21:03:45,479 | INFO     | . Timing measurements:
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | . get job = 0 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | . initial setup = 2 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | . payload setup = 4 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | . stage-in = 0 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | . payload execution = 13481 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | . stage-out = 0 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | . log creation = 0 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,480 | INFO     | ..............................
[2024-04-26 23:04:02] 2024-04-26 21:03:45,538 | INFO     | 
[2024-04-26 23:04:02] 2024-04-26 21:03:45,538 | INFO     | job summary report
[2024-04-26 23:04:02] 2024-04-26 21:03:45,538 | INFO     | --------------------------------------------------
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | PanDA job id: 6182268179
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | task id: 38204263
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | errors: (none)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | pilot state: finished 
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | transexitcode: 0
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | exeerrorcode: 0
[2024-04-26 23:04:02] 2024-04-26 21:03:45,539 | INFO     | exeerrordiag: 
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | exitcode: 0
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | exitmsg: OK
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | cpuconsumptiontime: 51027 s
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | nevents: 400
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | neventsw: 0
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | pid: 559303
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | pgrp: 559303
[2024-04-26 23:04:02] 2024-04-26 21:03:45,540 | INFO     | corecount: 4
[2024-04-26 23:04:02] 2024-04-26 21:03:45,541 | INFO     | event service: False
[2024-04-26 23:04:02] 2024-04-26 21:03:45,541 | INFO     | sizes: {0: 2374809, 1: 2375744, 4: 2375950, 11: 2375978, 13488: 2406400, 13489: 2415566, 13494: 2415680}
[2024-04-26 23:04:02] 2024-04-26 21:03:45,541 | INFO     | --------------------------------------------------
[2024-04-26 23:04:02] 2024-04-26 21:03:45,541 | INFO     | 
[2024-04-26 23:04:02] 2024-04-26 21:03:45,541 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/0
[2024-04-26 23:04:02] 2024-04-26 21:03:45,558 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,558 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,558 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,558 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,558 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,558 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,559 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,560 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,560 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,560 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,560 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,560 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-26 23:04:02] 2024-04-26 21:03:45,560 | INFO     | job 6182268179 has completed (purged errors)
[2024-04-26 23:04:02] 2024-04-26 21:03:45,561 | INFO     | overall cleanup function is called
[2024-04-26 23:04:02] 2024-04-26 21:03:46,568 | INFO     | --- collectZombieJob: --- 10, [559303]
[2024-04-26 23:04:02] 2024-04-26 21:03:46,569 | INFO     | zombie collector waiting for pid 559303
[2024-04-26 23:04:02] 2024-04-26 21:03:46,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-26 23:04:02] 2024-04-26 21:03:47,571 | INFO     | collected zombie processes
[2024-04-26 23:04:02] 2024-04-26 21:03:47,571 | INFO     | will now attempt to kill all subprocesses of pid=559303
[2024-04-26 23:04:02] 2024-04-26 21:03:47,680 | INFO     | process IDs to be killed: [559303] (in reverse order)
[2024-04-26 23:04:02] 2024-04-26 21:03:47,747 | WARNING  | found no corresponding commands to process id(s)
[2024-04-26 23:04:02] 2024-04-26 21:03:47,747 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-26 23:04:02] 2024-04-26 21:03:47,751 | INFO     | did not find any defunct processes belonging to 559303
[2024-04-26 23:04:02] 2024-04-26 21:03:47,755 | INFO     | did not find any defunct processes belonging to 559303
[2024-04-26 23:04:02] 2024-04-26 21:03:47,755 | INFO     | ready for new job
[2024-04-26 23:04:02] 2024-04-26 21:03:47,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-26 23:04:02] 2024-04-26 21:03:47,756 | INFO     | *************************************
[2024-04-26 23:04:02] 2024-04-26 21:03:47,756 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-26 23:04:02] 2024-04-26 21:03:47,757 | INFO     | *************************************
[2024-04-26 23:04:02] 2024-04-26 21:03:47,757 | INFO     | 
[2024-04-26 23:04:02] 2024-04-26 21:03:47,758 | INFO     | architecture information:
[2024-04-26 23:04:02] 2024-04-26 21:03:47,758 | INFO     | executing command: cat /etc/os-release
[2024-04-26 23:04:02] 2024-04-26 21:03:47,769 | INFO     | cat /etc/os-release:
[2024-04-26 23:04:02] NAME="CentOS Linux"
[2024-04-26 23:04:02] VERSION="7 (Core)"
[2024-04-26 23:04:02] ID="centos"
[2024-04-26 23:04:02] ID_LIKE="rhel fedora"
[2024-04-26 23:04:02] VERSION_ID="7"
[2024-04-26 23:04:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-26 23:04:02] ANSI_COLOR="0;31"
[2024-04-26 23:04:02] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-26 23:04:02] HOME_URL="https://www.centos.org/"
[2024-04-26 23:04:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-26 23:04:02] 
[2024-04-26 23:04:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-26 23:04:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-26 23:04:02] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-26 23:04:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-26 23:04:02] 
[2024-04-26 23:04:02] 2024-04-26 21:03:47,770 | INFO     | *************************************
[2024-04-26 23:04:02] 2024-04-26 21:03:48,272 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/0
[2024-04-26 23:04:02] 2024-04-26 21:03:48,287 | INFO     | sufficient remaining disk space (1643056726016 B)
[2024-04-26 23:04:02] 2024-04-26 21:03:48,288 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-26 23:04:02] 2024-04-26 21:03:48,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-26 23:04:02] 2024-04-26 21:03:48,288 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-26 23:04:02] 2024-04-26 21:03:48,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-26 23:04:02] 2024-04-26 21:03:48,288 | INFO     | found 0 job(s) in 20 queues
[2024-04-26 23:04:02] 2024-04-26 21:03:48,289 | INFO     | aborting loop
[2024-04-26 23:04:02] 2024-04-26 21:03:48,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-26 23:04:02] 2024-04-26 21:03:48,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-26 23:04:02] 2024-04-26 21:03:48,584 | INFO     | all job control threads have been joined
[2024-04-26 23:04:02] 2024-04-26 21:03:48,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-26 23:04:02] 2024-04-26 21:03:49,153 | INFO     | all payload control threads have been joined
[2024-04-26 23:04:02] 2024-04-26 21:03:49,293 | INFO     | [job] retrieve thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:49,294 | INFO     | [job] job monitor thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:49,331 | INFO     | all data control threads have been joined
[2024-04-26 23:04:02] 2024-04-26 21:03:49,407 | INFO     | [payload] failed_post thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:49,581 | INFO     | [job] validate thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:49,589 | INFO     | [job] control thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:49,629 | INFO     | [job] create_data_payload thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:49,785 | INFO     | [payload] validate_pre thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:50,020 | INFO     | [payload] execute_payloads thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:50,053 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:50,158 | INFO     | [payload] control thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:50,180 | INFO     | [data] copytool_in thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:50,336 | INFO     | [data] control thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:50,547 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-26 23:04:02] 2024-04-26 21:03:50,685 | INFO     | [payload] validate_post thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:50,974 | INFO     | [data] copytool_out thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:51,522 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-26 23:04:02] 2024-04-26 21:03:51,552 | INFO     | [job] queue monitor thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:55,527 | INFO     | [data] queue_monitor thread has finished
[2024-04-26 23:04:02] 2024-04-26 21:03:56,563 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47998454359104)>', '<ExcThread(monitor, started 47998629795584)>']
[2024-04-26 23:04:02] 2024-04-26 21:03:57,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-26 23:04:02] 2024-04-26 21:03:57,331 | INFO     | [monitor] control thread has ended
[2024-04-26 23:04:02] 2024-04-26 21:04:01,588 | INFO     | all workflow threads have been joined
[2024-04-26 23:04:02] 2024-04-26 21:04:01,588 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-26 23:04:02] 2024-04-26 21:04:01,589 | INFO     | traces error code: 0
[2024-04-26 23:04:02] 2024-04-26 21:04:01,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-26 23:04:02] 2024-04-26 21:04:01,657 [wrapper] ==== pilot stdout END ====
[2024-04-26 23:04:02] 2024-04-26 21:04:01,660 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-26 23:04:02] 2024-04-26 21:04:01,663 [wrapper] pilotpid: 552341
[2024-04-26 23:04:02] 2024-04-26 21:04:01,665 [wrapper] Pilot exit status: 0
[2024-04-26 23:04:02] 2024-04-26 21:04:01,674 [wrapper] pandaids: 6182268179
[2024-04-26 23:04:02] 2024-04-26 21:04:01,724 [wrapper] cleanup: SIGTERM to supervisor_pilot 1003759 552342
[2024-04-26 23:04:02] 2024-04-26 21:04:01,727 [wrapper] Test setup, not cleaning
[2024-04-26 23:04:02] 2024-04-26 21:04:01,728 [wrapper] ==== wrapper stdout END ====
[2024-04-26 23:04:02] 2024-04-26 21:04:01,730 [wrapper] ==== wrapper stderr END ====
[2024-04-26 23:04:02] 2024-04-26 21:04:01,734 [wrapper] apfmon messages muted
[2024-04-26 23:04:02]  *** Error codes and diagnostics ***
[2024-04-26 23:04:02]     "exeErrorCode": 0,
[2024-04-26 23:04:02]     "exeErrorDiag": "",
[2024-04-26 23:04:02]     "pilotErrorCode": 0,
[2024-04-26 23:04:02]     "pilotErrorDiag": "",
[2024-04-26 23:04:02]  *** Listing of results directory ***
[2024-04-26 23:04:02] total 712664
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc    462745 Apr 21 12:07 pilot3.tar.gz
[2024-04-26 23:04:02] -rwx------ 1 boinc boinc     32211 Apr 21 12:23 runpilot2-wrapper.sh
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc      6720 Apr 21 12:23 queuedata.json
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc       100 Apr 26 19:18 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-26 23:04:02] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 19:18 run_atlas
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc       105 Apr 26 19:18 job.xml
[2024-04-26 23:04:02] -rw-r--r-- 2 boinc boinc 522862712 Apr 26 19:18 EVNT.38204261._000042.pool.root.1
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc      6457 Apr 26 19:18 init_data.xml
[2024-04-26 23:04:02] drwxrwx--x 2 boinc boinc      4096 Apr 26 19:18 shared
[2024-04-26 23:04:02] -rw-r--r-- 2 boinc boinc    474813 Apr 26 19:18 input.tar.gz
[2024-04-26 23:04:02] -rw-r--r-- 2 boinc boinc     17537 Apr 26 19:18 start_atlas.sh
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc         0 Apr 26 19:18 boinc_lockfile
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc      2650 Apr 26 19:18 pandaJob.out
[2024-04-26 23:04:02] -rw------- 1 boinc boinc       424 Apr 26 19:18 setup.sh.local
[2024-04-26 23:04:02] -rw------- 1 boinc boinc    997397 Apr 26 19:18 agis_schedconf.cvmfs.json
[2024-04-26 23:04:02] -rw------- 1 boinc boinc   1315307 Apr 26 19:18 cric_ddmendpoints.json
[2024-04-26 23:04:02] drwx------ 4 boinc boinc      4096 Apr 26 19:18 pilot3
[2024-04-26 23:04:02] -rw------- 1 boinc boinc 200193877 Apr 26 23:03 HITS.38204263._001041.pool.root.1
[2024-04-26 23:04:02] -rw------- 1 boinc boinc        95 Apr 26 23:03 pilot_heartbeat.json
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc       531 Apr 26 23:03 boinc_task_state.xml
[2024-04-26 23:04:02] -rw------- 1 boinc boinc      1051 Apr 26 23:03 memory_monitor_summary.json
[2024-04-26 23:04:02] -rw------- 1 boinc boinc         0 Apr 26 23:03 agis_ddmendpoints.agis.ALL.json
[2024-04-26 23:04:02] -rw------- 1 boinc boinc    331435 Apr 26 23:03 log.38204263._001041.job.log.tgz.1
[2024-04-26 23:04:02] -rw------- 1 boinc boinc      7740 Apr 26 23:03 heartbeat.json
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc      8192 Apr 26 23:03 boinc_mmap_file
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc        28 Apr 26 23:03 wrapper_checkpoint.txt
[2024-04-26 23:04:02] -rw------- 1 boinc boinc      4345 Apr 26 23:04 pilotlog.txt
[2024-04-26 23:04:02] -rw------- 1 boinc boinc   1281544 Apr 26 23:04 log.38204263._001041.job.log.1
[2024-04-26 23:04:02] -rw------- 1 boinc boinc       357 Apr 26 23:04 output.list
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc       620 Apr 26 23:04 runtime_log
[2024-04-26 23:04:02] -rw------- 1 boinc boinc   1628160 Apr 26 23:04 result.tar.gz
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc     11410 Apr 26 23:04 runtime_log.err
[2024-04-26 23:04:02] -rw------- 1 boinc boinc       658 Apr 26 23:04 74nKDmQXjI5nsSi4apGgGQJmABFKDmABFKDmRLXKDmPVMKDmJ1SH7n.diag
[2024-04-26 23:04:02] -rw-r--r-- 1 boinc boinc     21002 Apr 26 23:04 stderr.txt
[2024-04-26 23:04:02] HITS file was successfully produced:
[2024-04-26 23:04:02] -rw------- 1 boinc boinc 200193877 Apr 26 23:03 shared/HITS.pool.root.1
[2024-04-26 23:04:02]  *** Contents of shared directory: ***
[2024-04-26 23:04:02] total 708200
[2024-04-26 23:04:02] -rw-r--r-- 2 boinc boinc 522862712 Apr 26 19:18 ATLAS.root_0
[2024-04-26 23:04:02] -rw-r--r-- 2 boinc boinc    474813 Apr 26 19:18 input.tar.gz
[2024-04-26 23:04:02] -rw-r--r-- 2 boinc boinc     17537 Apr 26 19:18 start_atlas.sh
[2024-04-26 23:04:02] -rw------- 1 boinc boinc 200193877 Apr 26 23:03 HITS.pool.root.1
[2024-04-26 23:04:02] -rw------- 1 boinc boinc   1628160 Apr 26 23:04 result.tar.gz
23:04:04 (548090): run_atlas exited; CPU time 50798.702643
23:04:04 (548090): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN