Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:59:37 (787039): wrapper (7.7.26015): starting
03:59:37 (787039): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 03:59:37] Arguments: --nthreads 4
[2024-04-26 03:59:37] Threads: 4
[2024-04-26 03:59:37] Checking for CVMFS
[2024-04-26 03:59:37] No cvmfs_config command found, will try listing directly
[2024-04-26 03:59:37] CVMFS is ok
[2024-04-26 03:59:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 03:59:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 03:59:37] Further information can be found at the LHC@home message board.
[2024-04-26 03:59:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 03:59:37] Checking for apptainer binary...
[2024-04-26 03:59:37] which: no apptainer in ((null))
[2024-04-26 03:59:37] apptainer is not installed, using version from CVMFS
[2024-04-26 03:59:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 03:59:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2024-04-26 03:59:38] apptainer works
[2024-04-26 03:59:38] Set ATHENA_PROC_NUMBER=4
[2024-04-26 03:59:38] Set ATHENA_CORE_NUMBER=4
[2024-04-26 03:59:38] Starting ATLAS job with PandaID=6180967754
[2024-04-26 03:59:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-26 07:19:39]  *** The last 200 lines of the pilot log: ***
[2024-04-26 07:19:39]  filetype=log
[2024-04-26 07:19:39]  guid=147b21a7-a54a-495b-9bac-6632d0132b56
[2024-04-26 07:19:39]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-26 07:19:39]  is_tar=False
[2024-04-26 07:19:39]  lfn=log.38204279._014388.job.log.tgz.1
[2024-04-26 07:19:39]  mtime=0
[2024-04-26 07:19:39]  protocol_id=None
[2024-04-26 07:19:39]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-26 07:19:39]  replicas=None
[2024-04-26 07:19:39]  scope=mc23_13p6TeV
[2024-04-26 07:19:39]  status=None
[2024-04-26 07:19:39]  status_code=0
[2024-04-26 07:19:39]  storage_token=
[2024-04-26 07:19:39]  surl=/scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6180967754/log.38204279._014388.job.log.tgz.1
[2024-04-26 07:19:39]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/e5/log.38204279._014388.job.log.tgz.1
[2024-04-26 07:19:39]  workdir=None
[2024-04-26 07:19:39] ]
[2024-04-26 07:19:39] 2024-04-26 05:19:16,865 | INFO     | transferring file log.38204279._014388.job.log.tgz.1 from /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6180967754/log.38204279._014388.job.log.tgz.1 to /scratch/b
[2024-04-26 07:19:39] 2024-04-26 05:19:16,865 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6180967754/log.38204279._014388.job.log.tgz.1 /scratch/boinc/var/slot52/slots/0/lo
[2024-04-26 07:19:39] 2024-04-26 05:19:16,887 | INFO     | adding to output.list: log.38204279._014388.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b2/e5/log.38204279._014388.job.log.tg
[2024-04-26 07:19:39] 2024-04-26 05:19:16,888 | INFO     | summary of transferred files:
[2024-04-26 07:19:39] 2024-04-26 05:19:16,888 | INFO     |  -- lfn=log.38204279._014388.job.log.tgz.1, status_code=0, status=transferred
[2024-04-26 07:19:39] 2024-04-26 05:19:16,888 | INFO     | stage-out finished correctly
[2024-04-26 07:19:39] 2024-04-26 05:19:17,101 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-26 07:19:39] 2024-04-26 05:19:17,180 | INFO     | job 6180967754 has state=finished
[2024-04-26 07:19:39] 2024-04-26 05:19:17,181 | INFO     | preparing for final server update for job 6180967754 in state='finished'
[2024-04-26 07:19:39] 2024-04-26 05:19:17,181 | INFO     | this job has now completed (state=finished)
[2024-04-26 07:19:39] 2024-04-26 05:19:17,181 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-26 07:19:39] 2024-04-26 05:19:17,181 | INFO     | job 6180967754 has finished - writing final server update
[2024-04-26 07:19:39] 2024-04-26 05:19:17,182 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3371690/.job.ad'
[2024-04-26 07:19:39] 2024-04-26 05:19:17,182 | INFO     | total number of processed events: 400 (read)
[2024-04-26 07:19:39] 2024-04-26 05:19:17,186 | INFO     | executing command: lscpu
[2024-04-26 07:19:39] 2024-04-26 05:19:17,236 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-04-26 07:19:39] 2024-04-26 05:19:17,237 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-26 07:19:39] 2024-04-26 05:19:17,281 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-26 07:19:39] 2024-04-26 05:19:21,990 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-26 07:19:39] 2024-04-26 05:19:21,991 | INFO     | using path: /scratch/boinc/var/slot52/slots/0/PanDA_Pilot-6180967754/memory_monitor_summary.json (trf name=prmon)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,000 | INFO     | extracted standard info from prmon json
[2024-04-26 07:19:39] 2024-04-26 05:19:22,000 | INFO     | extracted standard memory fields from prmon json
[2024-04-26 07:19:39] 2024-04-26 05:19:22,001 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-26 07:19:39] 2024-04-26 05:19:22,001 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-26 07:19:39] 2024-04-26 05:19:22,006 | INFO     | fitting pss+swap vs Time
[2024-04-26 07:19:39] 2024-04-26 05:19:22,009 | INFO     | current chi2=4.130951160014231 (change=0.04511458031042229 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,009 | INFO     | right removable region: 190
[2024-04-26 07:19:39] 2024-04-26 05:19:22,011 | INFO     | current chi2=1.650790425167217 (change=60.05651933223501 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,012 | INFO     | current chi2=0.07077003340130535 (change=95.71296075368643 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,014 | INFO     | current chi2=0.0015789848800128235 (change=97.7688510176912 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,015 | INFO     | current chi2=0.0007845299310291332 (change=50.31428476865708 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,017 | INFO     | current chi2=0.0003621653349182176 (change=53.83664528348394 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,018 | INFO     | current chi2=0.00016958127906183655 (change=53.175728676481256 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,019 | INFO     | current chi2=9.33692984958464e-05 (change=44.94127004325756 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,020 | INFO     | current chi2=5.6154116628306e-05 (change=39.85805020179727 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,022 | INFO     | current chi2=1.5600894982814062e-05 (change=72.21771809522151 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,023 | INFO     | current chi2=8.292148624731577e-06 (change=46.84825047623099 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,024 | INFO     | current chi2=7.967151307110694e-06 (change=3.919337825802703 %)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,024 | INFO     | left removable region: 110
[2024-04-26 07:19:39] 2024-04-26 05:19:22,024 | INFO     | current memory leak: 0.54 B/s (using 80 data points, chi2=0.00)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | ..............................
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | . Timing measurements:
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | . get job = 0 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | . initial setup = 1 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | . payload setup = 4 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | . stage-in = 0 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | . payload execution = 11944 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,025 | INFO     | . stage-out = 1 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,026 | INFO     | . log creation = 0 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,026 | INFO     | ..............................
[2024-04-26 07:19:39] 2024-04-26 05:19:22,108 | INFO     | 
[2024-04-26 07:19:39] 2024-04-26 05:19:22,108 | INFO     | job summary report
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | --------------------------------------------------
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | PanDA job id: 6180967754
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | task id: 38204279
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | errors: (none)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | pilot state: finished 
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | transexitcode: 0
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | exeerrorcode: 0
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | exeerrordiag: 
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | exitcode: 0
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | exitmsg: OK
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | cpuconsumptiontime: 44947 s
[2024-04-26 07:19:39] 2024-04-26 05:19:22,109 | INFO     | nevents: 400
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | neventsw: 0
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | pid: 798658
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | pgrp: 798658
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | corecount: 4
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | event service: False
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | sizes: {0: 2374122, 1: 2375555, 5: 2375875, 12: 2375931, 11952: 2405565, 11953: 2405564, 11955: 2414786, 11960: 2414900}
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | --------------------------------------------------
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | 
[2024-04-26 07:19:39] 2024-04-26 05:19:22,110 | INFO     | executing command: ls -lF /scratch/boinc/var/slot52/slots/0
[2024-04-26 07:19:39] 2024-04-26 05:19:22,179 | WARNING  | process 798658 is no longer using CPU - aborting
[2024-04-26 07:19:39] 2024-04-26 05:19:22,179 | INFO     | aborting job monitoring since job object (job id=6180967754) has expired
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,225 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,226 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-26 07:19:39] 2024-04-26 05:19:22,227 | INFO     | job 6180967754 has completed (purged errors)
[2024-04-26 07:19:39] 2024-04-26 05:19:22,227 | INFO     | overall cleanup function is called
[2024-04-26 07:19:39] 2024-04-26 05:19:23,234 | INFO     | --- collectZombieJob: --- 10, [798658]
[2024-04-26 07:19:39] 2024-04-26 05:19:23,234 | INFO     | zombie collector waiting for pid 798658
[2024-04-26 07:19:39] 2024-04-26 05:19:23,234 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-26 07:19:39] 2024-04-26 05:19:24,239 | INFO     | collected zombie processes
[2024-04-26 07:19:39] 2024-04-26 05:19:24,239 | INFO     | will now attempt to kill all subprocesses of pid=798658
[2024-04-26 07:19:39] 2024-04-26 05:19:24,473 | INFO     | process IDs to be killed: [798658] (in reverse order)
[2024-04-26 07:19:39] 2024-04-26 05:19:24,594 | WARNING  | found no corresponding commands to process id(s)
[2024-04-26 07:19:39] 2024-04-26 05:19:24,595 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-26 07:19:39] 2024-04-26 05:19:24,604 | INFO     | did not find any defunct processes belonging to 798658
[2024-04-26 07:19:39] 2024-04-26 05:19:24,613 | INFO     | did not find any defunct processes belonging to 798658
[2024-04-26 07:19:39] 2024-04-26 05:19:24,613 | INFO     | ready for new job
[2024-04-26 07:19:39] 2024-04-26 05:19:24,614 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-26 07:19:39] 2024-04-26 05:19:24,615 | INFO     | *************************************
[2024-04-26 07:19:39] 2024-04-26 05:19:24,616 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-26 07:19:39] 2024-04-26 05:19:24,616 | INFO     | *************************************
[2024-04-26 07:19:39] 2024-04-26 05:19:24,616 | INFO     | 
[2024-04-26 07:19:39] 2024-04-26 05:19:24,620 | INFO     | architecture information:
[2024-04-26 07:19:39] 2024-04-26 05:19:24,620 | INFO     | executing command: cat /etc/os-release
[2024-04-26 07:19:39] 2024-04-26 05:19:24,636 | INFO     | cat /etc/os-release:
[2024-04-26 07:19:39] NAME="CentOS Linux"
[2024-04-26 07:19:39] VERSION="7 (Core)"
[2024-04-26 07:19:39] ID="centos"
[2024-04-26 07:19:39] ID_LIKE="rhel fedora"
[2024-04-26 07:19:39] VERSION_ID="7"
[2024-04-26 07:19:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-26 07:19:39] ANSI_COLOR="0;31"
[2024-04-26 07:19:39] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-26 07:19:39] HOME_URL="https://www.centos.org/"
[2024-04-26 07:19:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-26 07:19:39] 
[2024-04-26 07:19:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-26 07:19:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-26 07:19:39] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-26 07:19:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-26 07:19:39] 
[2024-04-26 07:19:39] 2024-04-26 05:19:24,636 | INFO     | *************************************
[2024-04-26 07:19:39] 2024-04-26 05:19:25,139 | INFO     | executing command: df -mP /scratch/boinc/var/slot52/slots/0
[2024-04-26 07:19:39] 2024-04-26 05:19:25,159 | INFO     | sufficient remaining disk space (616249163776 B)
[2024-04-26 07:19:39] 2024-04-26 05:19:25,159 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-26 07:19:39] 2024-04-26 05:19:25,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-26 07:19:39] 2024-04-26 05:19:25,160 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-26 07:19:39] 2024-04-26 05:19:25,162 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-26 07:19:39] 2024-04-26 05:19:25,162 | INFO     | found 0 job(s) in 20 queues
[2024-04-26 07:19:39] 2024-04-26 05:19:25,163 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-26 07:19:39] 2024-04-26 05:19:25,163 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-26 07:19:39] 2024-04-26 05:19:25,204 | INFO     | all data control threads have been joined
[2024-04-26 07:19:39] 2024-04-26 05:19:25,687 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-26 07:19:39] 2024-04-26 05:19:25,687 | INFO     | aborting loop
[2024-04-26 07:19:39] 2024-04-26 05:19:25,934 | INFO     | all payload control threads have been joined
[2024-04-26 07:19:39] 2024-04-26 05:19:26,162 | INFO     | [job] retrieve thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:26,209 | INFO     | [data] control thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:26,239 | INFO     | [job] create_data_payload thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:26,694 | INFO     | [job] job monitor thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:26,703 | INFO     | [payload] failed_post thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:26,821 | INFO     | all job control threads have been joined
[2024-04-26 07:19:39] 2024-04-26 05:19:26,935 | INFO     | [payload] control thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:26,980 | INFO     | [data] copytool_in thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:27,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-26 07:19:39] 2024-04-26 05:19:27,165 | INFO     | [data] copytool_out thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:27,240 | INFO     | [job] validate thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:27,257 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:27,350 | INFO     | [payload] validate_post thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:27,472 | INFO     | [payload] execute_payloads thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:27,620 | INFO     | [payload] validate_pre thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:27,692 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-26 07:19:39] 2024-04-26 05:19:27,826 | INFO     | [job] control thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:28,123 | INFO     | [job] queue monitor thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:31,697 | INFO     | [data] queue_monitor thread has finished
[2024-04-26 07:19:39] 2024-04-26 05:19:33,719 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47403386442816)>', '<ExcThread(monitor, started 47403553474304)>']
[2024-04-26 07:19:39] 2024-04-26 05:19:34,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-26 07:19:39] 2024-04-26 05:19:34,200 | INFO     | [monitor] control thread has ended
[2024-04-26 07:19:39] 2024-04-26 05:19:38,744 | INFO     | all workflow threads have been joined
[2024-04-26 07:19:39] 2024-04-26 05:19:38,744 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-26 07:19:39] 2024-04-26 05:19:38,745 | INFO     | traces error code: 0
[2024-04-26 07:19:39] 2024-04-26 05:19:38,745 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-26 07:19:39] 2024-04-26 05:19:38,834 [wrapper] ==== pilot stdout END ====
[2024-04-26 07:19:39] 2024-04-26 05:19:38,837 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-26 07:19:39] 2024-04-26 05:19:38,839 [wrapper] pilotpid: 791341
[2024-04-26 07:19:39] 2024-04-26 05:19:38,843 [wrapper] Pilot exit status: 0
[2024-04-26 07:19:39] 2024-04-26 05:19:38,853 [wrapper] pandaids: 6180967754
[2024-04-26 07:19:39] 2024-04-26 05:19:38,934 [wrapper] cleanup: SIGTERM to supervisor_pilot 1400597 791342
[2024-04-26 07:19:39] 2024-04-26 05:19:38,937 [wrapper] Test setup, not cleaning
[2024-04-26 07:19:39] 2024-04-26 05:19:38,939 [wrapper] ==== wrapper stdout END ====
[2024-04-26 07:19:39] 2024-04-26 05:19:38,942 [wrapper] ==== wrapper stderr END ====
[2024-04-26 07:19:39] 2024-04-26 05:19:38,947 [wrapper] apfmon messages muted
[2024-04-26 07:19:39]  *** Error codes and diagnostics ***
[2024-04-26 07:19:39]     "exeErrorCode": 0,
[2024-04-26 07:19:39]     "exeErrorDiag": "",
[2024-04-26 07:19:39]     "pilotErrorCode": 0,
[2024-04-26 07:19:39]     "pilotErrorDiag": "",
[2024-04-26 07:19:39]  *** Listing of results directory ***
[2024-04-26 07:19:39] total 620128
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc    462745 Apr 20 09:27 pilot3.tar.gz
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc      6720 Apr 20 09:56 queuedata.json
[2024-04-26 07:19:39] -rwx------ 1 boinc boinc     32211 Apr 20 09:56 runpilot2-wrapper.sh
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc       100 Apr 26 03:59 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-26 07:19:39] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 03:59 run_atlas
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc       105 Apr 26 03:59 job.xml
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc      6663 Apr 26 03:59 init_data.xml
[2024-04-26 07:19:39] -rw-r--r-- 2 boinc boinc 452756399 Apr 26 03:59 EVNT.38204277._000573.pool.root.1
[2024-04-26 07:19:39] drwxrwx--x 2 boinc boinc      4096 Apr 26 03:59 shared
[2024-04-26 07:19:39] -rw-r--r-- 2 boinc boinc    474802 Apr 26 03:59 input.tar.gz
[2024-04-26 07:19:39] -rw-r--r-- 2 boinc boinc     17537 Apr 26 03:59 start_atlas.sh
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc         0 Apr 26 03:59 boinc_lockfile
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc      2584 Apr 26 03:59 pandaJob.out
[2024-04-26 07:19:39] -rw------- 1 boinc boinc       424 Apr 26 03:59 setup.sh.local
[2024-04-26 07:19:39] -rw------- 1 boinc boinc    993582 Apr 26 03:59 agis_schedconf.cvmfs.json
[2024-04-26 07:19:39] -rw------- 1 boinc boinc   1315307 Apr 26 03:59 cric_ddmendpoints.json
[2024-04-26 07:19:39] drwx------ 4 boinc boinc      4096 Apr 26 03:59 pilot3
[2024-04-26 07:19:39] -rw------- 1 boinc boinc 175876230 Apr 26 07:18 HITS.38204279._014388.pool.root.1
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc       532 Apr 26 07:19 boinc_task_state.xml
[2024-04-26 07:19:39] -rw------- 1 boinc boinc      1047 Apr 26 07:19 memory_monitor_summary.json
[2024-04-26 07:19:39] -rw------- 1 boinc boinc         0 Apr 26 07:19 agis_ddmendpoints.agis.ALL.json
[2024-04-26 07:19:39] -rw------- 1 boinc boinc    310533 Apr 26 07:19 log.38204279._014388.job.log.tgz.1
[2024-04-26 07:19:39] -rw------- 1 boinc boinc        95 Apr 26 07:19 pilot_heartbeat.json
[2024-04-26 07:19:39] -rw------- 1 boinc boinc      7738 Apr 26 07:19 heartbeat.json
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc        28 Apr 26 07:19 wrapper_checkpoint.txt
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc      8192 Apr 26 07:19 boinc_mmap_file
[2024-04-26 07:19:39] -rw------- 1 boinc boinc      4344 Apr 26 07:19 pilotlog.txt
[2024-04-26 07:19:39] -rw------- 1 boinc boinc   1138311 Apr 26 07:19 log.38204279._014388.job.log.1
[2024-04-26 07:19:39] -rw------- 1 boinc boinc       357 Apr 26 07:19 output.list
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc       620 Apr 26 07:19 runtime_log
[2024-04-26 07:19:39] -rw------- 1 boinc boinc   1464320 Apr 26 07:19 result.tar.gz
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc     11410 Apr 26 07:19 runtime_log.err
[2024-04-26 07:19:39] -rw------- 1 boinc boinc       658 Apr 26 07:19 rrEMDmclKI5nsSi4apGgGQJmABFKDmABFKDmRLXKDmbcKKDmxBLyXo.diag
[2024-04-26 07:19:39] -rw-r--r-- 1 boinc boinc     21383 Apr 26 07:19 stderr.txt
[2024-04-26 07:19:39] HITS file was successfully produced:
[2024-04-26 07:19:39] -rw------- 1 boinc boinc 175876230 Apr 26 07:18 shared/HITS.pool.root.1
[2024-04-26 07:19:39]  *** Contents of shared directory: ***
[2024-04-26 07:19:39] total 615828
[2024-04-26 07:19:39] -rw-r--r-- 2 boinc boinc 452756399 Apr 26 03:59 ATLAS.root_0
[2024-04-26 07:19:39] -rw-r--r-- 2 boinc boinc    474802 Apr 26 03:59 input.tar.gz
[2024-04-26 07:19:39] -rw-r--r-- 2 boinc boinc     17537 Apr 26 03:59 start_atlas.sh
[2024-04-26 07:19:39] -rw------- 1 boinc boinc 175876230 Apr 26 07:18 HITS.pool.root.1
[2024-04-26 07:19:39] -rw------- 1 boinc boinc   1464320 Apr 26 07:19 result.tar.gz
07:19:41 (787039): run_atlas exited; CPU time 44702.702800
07:19:41 (787039): called boinc_finish(0)

</stderr_txt>
]]>

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