Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:02:03 (1000454): wrapper (7.7.26015): starting
11:02:03 (1000454): wrapper: running run_atlas (--nthreads 4)
[2024-04-28 11:02:03] Arguments: --nthreads 4
[2024-04-28 11:02:03] Threads: 4
[2024-04-28 11:02:03] Checking for CVMFS
[2024-04-28 11:02:03] No cvmfs_config command found, will try listing directly
[2024-04-28 11:02:03] CVMFS is ok
[2024-04-28 11:02:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-28 11:02:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-28 11:02:03] Further information can be found at the LHC@home message board.
[2024-04-28 11:02:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-28 11:02:03] Checking for apptainer binary...
[2024-04-28 11:02:03] which: no apptainer in ((null))
[2024-04-28 11:02:03] apptainer is not installed, using version from CVMFS
[2024-04-28 11:02:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-28 11:02:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2024-04-28 11:02:04] apptainer works
[2024-04-28 11:02:04] Set ATHENA_PROC_NUMBER=4
[2024-04-28 11:02:04] Set ATHENA_CORE_NUMBER=4
[2024-04-28 11:02:04] Starting ATLAS job with PandaID=6182135283
[2024-04-28 11:02:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-28 14:05:50]  *** The last 200 lines of the pilot log: ***
[2024-04-28 14:05:50]  filesize=311901
[2024-04-28 14:05:50]  filetype=log
[2024-04-28 14:05:50]  guid=a5e6f0c1-c10a-4561-aa20-fe9f1836c100
[2024-04-28 14:05:50]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-28 14:05:50]  is_tar=False
[2024-04-28 14:05:50]  lfn=log.38204279._020898.job.log.tgz.1
[2024-04-28 14:05:50]  mtime=0
[2024-04-28 14:05:50]  protocol_id=None
[2024-04-28 14:05:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-28 14:05:50]  replicas=None
[2024-04-28 14:05:50]  scope=mc23_13p6TeV
[2024-04-28 14:05:50]  status=None
[2024-04-28 14:05:50]  status_code=0
[2024-04-28 14:05:50]  storage_token=
[2024-04-28 14:05:50]  surl=/scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6182135283/log.38204279._020898.job.log.tgz.1
[2024-04-28 14:05:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/af/log.38204279._020898.job.log.tgz.1
[2024-04-28 14:05:50]  workdir=None
[2024-04-28 14:05:50] ]
[2024-04-28 14:05:50] 2024-04-28 12:05:27,095 | INFO     | transferring file log.38204279._020898.job.log.tgz.1 from /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6182135283/log.38204279._020898.job.log.tgz.1 to /scratch/b
[2024-04-28 14:05:50] 2024-04-28 12:05:27,095 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6182135283/log.38204279._020898.job.log.tgz.1 /scratch/boinc/var/slot28/slots/0/lo
[2024-04-28 14:05:50] 2024-04-28 12:05:27,113 | INFO     | adding to output.list: log.38204279._020898.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/af/log.38204279._020898.job.log.tg
[2024-04-28 14:05:50] 2024-04-28 12:05:27,114 | INFO     | summary of transferred files:
[2024-04-28 14:05:50] 2024-04-28 12:05:27,114 | INFO     |  -- lfn=log.38204279._020898.job.log.tgz.1, status_code=0, status=transferred
[2024-04-28 14:05:50] 2024-04-28 12:05:27,114 | INFO     | stage-out finished correctly
[2024-04-28 14:05:50] 2024-04-28 12:05:27,914 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-28 14:05:50] 2024-04-28 12:05:28,525 | INFO     | monitor loop #850: job 0:6182135283 is in state 'finished'
[2024-04-28 14:05:50] 2024-04-28 12:05:28,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-28 14:05:50] 2024-04-28 12:05:30,659 | INFO     | job 6182135283 has state=finished
[2024-04-28 14:05:50] 2024-04-28 12:05:30,659 | INFO     | preparing for final server update for job 6182135283 in state='finished'
[2024-04-28 14:05:50] 2024-04-28 12:05:30,660 | INFO     | this job has now completed (state=finished)
[2024-04-28 14:05:50] 2024-04-28 12:05:30,660 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-28 14:05:50] 2024-04-28 12:05:30,660 | INFO     | job 6182135283 has finished - writing final server update
[2024-04-28 14:05:50] 2024-04-28 12:05:30,661 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_654768/.job.ad'
[2024-04-28 14:05:50] 2024-04-28 12:05:30,661 | INFO     | total number of processed events: 400 (read)
[2024-04-28 14:05:50] 2024-04-28 12:05:30,665 | INFO     | executing command: lscpu
[2024-04-28 14:05:50] 2024-04-28 12:05:30,712 | INFO     | found 32 cores (16 cores per socket, 2 sockets)
[2024-04-28 14:05:50] 2024-04-28 12:05:30,713 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-28 14:05:50] 2024-04-28 12:05:30,743 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-28 14:05:50] 2024-04-28 12:05:31,029 | INFO     | monitor loop #851: job 0:6182135283 is in state 'finished'
[2024-04-28 14:05:50] 2024-04-28 12:05:31,029 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,532 | INFO     | monitor loop #852: job 0:6182135283 is in state 'finished'
[2024-04-28 14:05:50] 2024-04-28 12:05:33,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,629 | INFO     | CPU arch script returned: x86-64-v4
[2024-04-28 14:05:50] 2024-04-28 12:05:33,630 | INFO     | using path: /scratch/boinc/var/slot28/slots/0/PanDA_Pilot-6182135283/memory_monitor_summary.json (trf name=prmon)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,631 | INFO     | extracted standard info from prmon json
[2024-04-28 14:05:50] 2024-04-28 12:05:33,631 | INFO     | extracted standard memory fields from prmon json
[2024-04-28 14:05:50] 2024-04-28 12:05:33,631 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-28 14:05:50] 2024-04-28 12:05:33,631 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-28 14:05:50] 2024-04-28 12:05:33,633 | INFO     | fitting pss+swap vs Time
[2024-04-28 14:05:50] 2024-04-28 12:05:33,635 | INFO     | current chi2=4.090045928368695 (change=0.06071926329222276 %)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,635 | INFO     | right removable region: 174
[2024-04-28 14:05:50] 2024-04-28 12:05:33,636 | INFO     | current chi2=1.5628029591244494 (change=61.813288553854896 %)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,636 | INFO     | current chi2=0.058917650062606006 (change=96.23000137550198 %)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,637 | INFO     | current chi2=0.0006663036295172764 (change=98.86909333822842 %)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,637 | INFO     | current chi2=0.0001491900371446681 (change=77.60930144523553 %)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,638 | INFO     | current chi2=6.550209011823399e-05 (change=56.094863053946916 %)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,639 | INFO     | current chi2=5.263536061556685e-05 (change=19.64323501653483 %)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,639 | INFO     | left removable region: 60
[2024-04-28 14:05:50] 2024-04-28 12:05:33,639 | INFO     | current memory leak: 1.05 B/s (using 114 data points, chi2=0.00)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,639 | INFO     | ..............................
[2024-04-28 14:05:50] 2024-04-28 12:05:33,639 | INFO     | . Timing measurements:
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | . get job = 0 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | . initial setup = 1 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | . payload setup = 4 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | . stage-in = 0 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | . payload execution = 10970 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | . stage-out = 0 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | . log creation = 0 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,640 | INFO     | ..............................
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | 
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | job summary report
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | --------------------------------------------------
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | PanDA job id: 6182135283
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | task id: 38204279
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | errors: (none)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | pilot state: finished 
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | transexitcode: 0
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | exeerrorcode: 0
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | exeerrordiag: 
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | exitcode: 0
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | exitmsg: OK
[2024-04-28 14:05:50] 2024-04-28 12:05:33,691 | INFO     | cpuconsumptiontime: 41028 s
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | nevents: 400
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | neventsw: 0
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | pid: 1011781
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | pgrp: 1011781
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | corecount: 4
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | event service: False
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | sizes: {0: 2375640, 3: 2375846, 11: 2375874, 10978: 2404980, 10980: 2413962, 10981: 2414018, 10987: 2414316}
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | --------------------------------------------------
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | 
[2024-04-28 14:05:50] 2024-04-28 12:05:33,692 | INFO     | executing command: ls -lF /scratch/boinc/var/slot28/slots/0
[2024-04-28 14:05:50] 2024-04-28 12:05:33,714 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,715 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,716 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,716 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-28 14:05:50] 2024-04-28 12:05:33,716 | INFO     | job 6182135283 has completed (purged errors)
[2024-04-28 14:05:50] 2024-04-28 12:05:33,716 | INFO     | overall cleanup function is called
[2024-04-28 14:05:50] 2024-04-28 12:05:34,723 | INFO     | --- collectZombieJob: --- 10, [1011781]
[2024-04-28 14:05:50] 2024-04-28 12:05:34,723 | INFO     | zombie collector waiting for pid 1011781
[2024-04-28 14:05:50] 2024-04-28 12:05:34,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-28 14:05:50] 2024-04-28 12:05:35,725 | INFO     | collected zombie processes
[2024-04-28 14:05:50] 2024-04-28 12:05:35,725 | INFO     | will now attempt to kill all subprocesses of pid=1011781
[2024-04-28 14:05:50] 2024-04-28 12:05:35,859 | INFO     | process IDs to be killed: [1011781] (in reverse order)
[2024-04-28 14:05:50] 2024-04-28 12:05:35,944 | WARNING  | found no corresponding commands to process id(s)
[2024-04-28 14:05:50] 2024-04-28 12:05:35,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-28 14:05:50] 2024-04-28 12:05:35,955 | INFO     | did not find any defunct processes belonging to 1011781
[2024-04-28 14:05:50] 2024-04-28 12:05:35,964 | INFO     | did not find any defunct processes belonging to 1011781
[2024-04-28 14:05:50] 2024-04-28 12:05:35,965 | INFO     | ready for new job
[2024-04-28 14:05:50] 2024-04-28 12:05:35,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-28 14:05:50] 2024-04-28 12:05:35,968 | INFO     | *************************************
[2024-04-28 14:05:50] 2024-04-28 12:05:35,968 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-28 14:05:50] 2024-04-28 12:05:35,968 | INFO     | *************************************
[2024-04-28 14:05:50] 2024-04-28 12:05:35,968 | INFO     | 
[2024-04-28 14:05:50] 2024-04-28 12:05:35,973 | INFO     | architecture information:
[2024-04-28 14:05:50] 2024-04-28 12:05:35,974 | INFO     | executing command: cat /etc/os-release
[2024-04-28 14:05:50] 2024-04-28 12:05:35,992 | INFO     | cat /etc/os-release:
[2024-04-28 14:05:50] NAME="CentOS Linux"
[2024-04-28 14:05:50] VERSION="7 (Core)"
[2024-04-28 14:05:50] ID="centos"
[2024-04-28 14:05:50] ID_LIKE="rhel fedora"
[2024-04-28 14:05:50] VERSION_ID="7"
[2024-04-28 14:05:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-28 14:05:50] ANSI_COLOR="0;31"
[2024-04-28 14:05:50] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-28 14:05:50] HOME_URL="https://www.centos.org/"
[2024-04-28 14:05:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-28 14:05:50] 
[2024-04-28 14:05:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-28 14:05:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-28 14:05:50] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-28 14:05:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-28 14:05:50] 
[2024-04-28 14:05:50] 2024-04-28 12:05:35,992 | INFO     | *************************************
[2024-04-28 14:05:50] 2024-04-28 12:05:36,495 | INFO     | executing command: df -mP /scratch/boinc/var/slot28/slots/0
[2024-04-28 14:05:50] 2024-04-28 12:05:36,512 | INFO     | sufficient remaining disk space (612254089216 B)
[2024-04-28 14:05:50] 2024-04-28 12:05:36,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-28 14:05:50] 2024-04-28 12:05:36,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-28 14:05:50] 2024-04-28 12:05:36,513 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-28 14:05:50] 2024-04-28 12:05:36,513 | INFO     | found 0 job(s) in 20 queues
[2024-04-28 14:05:50] 2024-04-28 12:05:36,513 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-28 14:05:50] 2024-04-28 12:05:36,513 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-28 14:05:50] 2024-04-28 12:05:36,977 | INFO     | all job control threads have been joined
[2024-04-28 14:05:50] 2024-04-28 12:05:37,041 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-28 14:05:50] 2024-04-28 12:05:37,041 | INFO     | aborting loop
[2024-04-28 14:05:50] 2024-04-28 12:05:37,331 | INFO     | all data control threads have been joined
[2024-04-28 14:05:50] 2024-04-28 12:05:37,513 | INFO     | all payload control threads have been joined
[2024-04-28 14:05:50] 2024-04-28 12:05:37,518 | INFO     | [job] retrieve thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:37,615 | INFO     | [payload] validate_pre thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:37,639 | INFO     | [data] copytool_in thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:37,692 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-28 14:05:50] 2024-04-28 12:05:37,882 | INFO     | [payload] execute_payloads thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:37,982 | INFO     | [job] control thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:38,046 | INFO     | [job] job monitor thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:38,337 | INFO     | [data] control thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:38,499 | INFO     | [payload] failed_post thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:38,518 | INFO     | [payload] control thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:38,520 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-28 14:05:50] 2024-04-28 12:05:38,543 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:38,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-28 14:05:50] 2024-04-28 12:05:38,737 | INFO     | [job] validate thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:39,016 | INFO     | [job] create_data_payload thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:39,070 | INFO     | [payload] validate_post thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:39,697 | INFO     | [data] copytool_out thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:39,707 | INFO     | [job] queue monitor thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:42,526 | INFO     | [data] queue_monitor thread has finished
[2024-04-28 14:05:50] 2024-04-28 12:05:44,468 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47576579949632)>', '<ExcThread(monitor, started 47576753284864)>']
[2024-04-28 14:05:50] 2024-04-28 12:05:44,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-28 14:05:50] 2024-04-28 12:05:44,550 | INFO     | [monitor] control thread has ended
[2024-04-28 14:05:50] 2024-04-28 12:05:49,493 | INFO     | all workflow threads have been joined
[2024-04-28 14:05:50] 2024-04-28 12:05:49,493 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-28 14:05:50] 2024-04-28 12:05:49,493 | INFO     | traces error code: 0
[2024-04-28 14:05:50] 2024-04-28 12:05:49,493 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-28 14:05:50] 2024-04-28 12:05:49,572 [wrapper] ==== pilot stdout END ====
[2024-04-28 14:05:50] 2024-04-28 12:05:49,574 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-28 14:05:50] 2024-04-28 12:05:49,576 [wrapper] pilotpid: 1004760
[2024-04-28 14:05:50] 2024-04-28 12:05:49,578 [wrapper] Pilot exit status: 0
[2024-04-28 14:05:50] 2024-04-28 12:05:49,584 [wrapper] pandaids: 6182135283
[2024-04-28 14:05:50] 2024-04-28 12:05:49,651 [wrapper] cleanup: SIGTERM to supervisor_pilot 1501248 1004761
[2024-04-28 14:05:50] 2024-04-28 12:05:49,653 [wrapper] Test setup, not cleaning
[2024-04-28 14:05:50] 2024-04-28 12:05:49,655 [wrapper] ==== wrapper stdout END ====
[2024-04-28 14:05:50] 2024-04-28 12:05:49,656 [wrapper] ==== wrapper stderr END ====
[2024-04-28 14:05:50] 2024-04-28 12:05:49,661 [wrapper] apfmon messages muted
[2024-04-28 14:05:50]  *** Error codes and diagnostics ***
[2024-04-28 14:05:50]     "exeErrorCode": 0,
[2024-04-28 14:05:50]     "exeErrorDiag": "",
[2024-04-28 14:05:50]     "pilotErrorCode": 0,
[2024-04-28 14:05:50]     "pilotErrorDiag": "",
[2024-04-28 14:05:50]  *** Listing of results directory ***
[2024-04-28 14:05:50] total 615648
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc    462745 Apr 21 09:58 pilot3.tar.gz
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc      6720 Apr 21 10:14 queuedata.json
[2024-04-28 14:05:50] -rwx------ 1 boinc boinc     32211 Apr 21 10:14 runpilot2-wrapper.sh
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc       100 Apr 28 11:01 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-28 14:05:50] -rwxr-xr-x 1 boinc boinc      7986 Apr 28 11:01 run_atlas
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc       105 Apr 28 11:01 job.xml
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc      6662 Apr 28 11:02 init_data.xml
[2024-04-28 14:05:50] -rw-r--r-- 2 boinc boinc 450985219 Apr 28 11:02 EVNT.38204277._000791.pool.root.1
[2024-04-28 14:05:50] -rw-r--r-- 2 boinc boinc     17537 Apr 28 11:02 start_atlas.sh
[2024-04-28 14:05:50] drwxrwx--x 2 boinc boinc      4096 Apr 28 11:02 shared
[2024-04-28 14:05:50] -rw-r--r-- 2 boinc boinc    474793 Apr 28 11:02 input.tar.gz
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc         0 Apr 28 11:02 boinc_lockfile
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc      2583 Apr 28 11:02 pandaJob.out
[2024-04-28 14:05:50] -rw------- 1 boinc boinc       424 Apr 28 11:02 setup.sh.local
[2024-04-28 14:05:50] -rw------- 1 boinc boinc    997146 Apr 28 11:02 agis_schedconf.cvmfs.json
[2024-04-28 14:05:50] -rw------- 1 boinc boinc   1315307 Apr 28 11:02 cric_ddmendpoints.json
[2024-04-28 14:05:50] drwx------ 4 boinc boinc      4096 Apr 28 11:02 pilot3
[2024-04-28 14:05:50] -rw------- 1 boinc boinc        95 Apr 28 14:04 pilot_heartbeat.json
[2024-04-28 14:05:50] -rw------- 1 boinc boinc 173216718 Apr 28 14:04 HITS.38204279._020898.pool.root.1
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc       532 Apr 28 14:05 boinc_task_state.xml
[2024-04-28 14:05:50] -rw------- 1 boinc boinc      1058 Apr 28 14:05 memory_monitor_summary.json
[2024-04-28 14:05:50] -rw------- 1 boinc boinc         0 Apr 28 14:05 agis_ddmendpoints.agis.ALL.json
[2024-04-28 14:05:50] -rw------- 1 boinc boinc    311901 Apr 28 14:05 log.38204279._020898.job.log.tgz.1
[2024-04-28 14:05:50] -rw------- 1 boinc boinc      7736 Apr 28 14:05 heartbeat.json
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc        28 Apr 28 14:05 wrapper_checkpoint.txt
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc      8192 Apr 28 14:05 boinc_mmap_file
[2024-04-28 14:05:50] -rw------- 1 boinc boinc      4344 Apr 28 14:05 pilotlog.txt
[2024-04-28 14:05:50] -rw------- 1 boinc boinc   1055299 Apr 28 14:05 log.38204279._020898.job.log.1
[2024-04-28 14:05:50] -rw------- 1 boinc boinc       357 Apr 28 14:05 output.list
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc       620 Apr 28 14:05 runtime_log
[2024-04-28 14:05:50] -rw------- 1 boinc boinc   1382400 Apr 28 14:05 result.tar.gz
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc     11410 Apr 28 14:05 runtime_log.err
[2024-04-28 14:05:50] -rw------- 1 boinc boinc       656 Apr 28 14:05 VMmLDmyVhI5n7Olcko1bjSoqABFKDmABFKDm2mFKDmRlGKDm1c4DVo.diag
[2024-04-28 14:05:50] -rw-r--r-- 1 boinc boinc     21342 Apr 28 14:05 stderr.txt
[2024-04-28 14:05:50] HITS file was successfully produced:
[2024-04-28 14:05:50] -rw------- 1 boinc boinc 173216718 Apr 28 14:04 shared/HITS.pool.root.1
[2024-04-28 14:05:50]  *** Contents of shared directory: ***
[2024-04-28 14:05:50] total 611420
[2024-04-28 14:05:50] -rw-r--r-- 2 boinc boinc 450985219 Apr 28 11:02 ATLAS.root_0
[2024-04-28 14:05:50] -rw-r--r-- 2 boinc boinc     17537 Apr 28 11:02 start_atlas.sh
[2024-04-28 14:05:50] -rw-r--r-- 2 boinc boinc    474793 Apr 28 11:02 input.tar.gz
[2024-04-28 14:05:50] -rw------- 1 boinc boinc 173216718 Apr 28 14:04 HITS.pool.root.1
[2024-04-28 14:05:50] -rw------- 1 boinc boinc   1382400 Apr 28 14:05 result.tar.gz
14:05:52 (1000454): run_atlas exited; CPU time 40805.298938
14:05:52 (1000454): called boinc_finish(0)

</stderr_txt>
]]>

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