Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:29:16 (98130): wrapper (7.7.26015): starting
15:29:16 (98130): wrapper: running run_atlas (--nthreads 4)
[2024-04-26 15:29:16] Arguments: --nthreads 4
[2024-04-26 15:29:16] Threads: 4
[2024-04-26 15:29:16] Checking for CVMFS
[2024-04-26 15:29:16] No cvmfs_config command found, will try listing directly
[2024-04-26 15:29:16] CVMFS is ok
[2024-04-26 15:29:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-26 15:29:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-26 15:29:16] Further information can be found at the LHC@home message board.
[2024-04-26 15:29:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-26 15:29:16] Checking for apptainer binary...
[2024-04-26 15:29:16] which: no apptainer in ((null))
[2024-04-26 15:29:16] apptainer is not installed, using version from CVMFS
[2024-04-26 15:29:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-26 15:29:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2024-04-26 15:29:17] apptainer works
[2024-04-26 15:29:17] Set ATHENA_PROC_NUMBER=4
[2024-04-26 15:29:17] Set ATHENA_CORE_NUMBER=4
[2024-04-26 15:29:17] Starting ATLAS job with PandaID=6182090789
[2024-04-26 15:29:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-26 19:18:10]  *** The last 200 lines of the pilot log: ***
[2024-04-26 19:18:10]  checkinputsize=True
[2024-04-26 19:18:10]  checksum={'adler32': '1c906e5e'}
[2024-04-26 19:18:10]  dataset=mc23_13p6TeV.603425.PhPy8EG_NNPDF23_A14_VBFH125_tautaul13l7.simul.log.e8559_e8528_s4162_tid38204375_00
[2024-04-26 19:18:10]  ddm_activity=['write_lan', 'write_wan']
[2024-04-26 19:18:10]  ddmendpoint=NDGF-T1_DATADISK
[2024-04-26 19:18:10]  direct_access_lan=False
[2024-04-26 19:18:10]  direct_access_wan=False
[2024-04-26 19:18:10]  domain=
[2024-04-26 19:18:10]  filesize=330303
[2024-04-26 19:18:10]  filetype=log
[2024-04-26 19:18:10]  guid=42cb2963-543c-4eaa-b6a6-b969d49ed8ef
[2024-04-26 19:18:10]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-26 19:18:10]  is_tar=False
[2024-04-26 19:18:10]  lfn=log.38204375._000639.job.log.tgz.1
[2024-04-26 19:18:10]  mtime=0
[2024-04-26 19:18:10]  protocol_id=None
[2024-04-26 19:18:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-26 19:18:10]  replicas=None
[2024-04-26 19:18:10]  scope=mc23_13p6TeV
[2024-04-26 19:18:10]  status=None
[2024-04-26 19:18:10]  status_code=0
[2024-04-26 19:18:10]  storage_token=
[2024-04-26 19:18:10]  surl=/scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182090789/log.38204375._000639.job.log.tgz.1
[2024-04-26 19:18:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/ff/log.38204375._000639.job.log.tgz.1
[2024-04-26 19:18:10]  workdir=None
[2024-04-26 19:18:10] ]
[2024-04-26 19:18:10] 2024-04-26 17:17:52,594 | INFO     | transferring file log.38204375._000639.job.log.tgz.1 from /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182090789/log.38204375._000639.job.log.tgz.1 to /scratch/b
[2024-04-26 19:18:10] 2024-04-26 17:17:52,594 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182090789/log.38204375._000639.job.log.tgz.1 /scratch/boinc/var/slot20/slots/0/lo
[2024-04-26 19:18:10] 2024-04-26 17:17:52,612 | INFO     | adding to output.list: log.38204375._000639.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/ff/log.38204375._000639.job.log.tg
[2024-04-26 19:18:10] 2024-04-26 17:17:52,612 | INFO     | summary of transferred files:
[2024-04-26 19:18:10] 2024-04-26 17:17:52,612 | INFO     |  -- lfn=log.38204375._000639.job.log.tgz.1, status_code=0, status=transferred
[2024-04-26 19:18:10] 2024-04-26 17:17:52,612 | INFO     | stage-out finished correctly
[2024-04-26 19:18:10] 2024-04-26 17:17:53,808 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-26 19:18:10] 2024-04-26 17:17:54,251 | INFO     | job 6182090789 has state=finished
[2024-04-26 19:18:10] 2024-04-26 17:17:54,251 | INFO     | preparing for final server update for job 6182090789 in state='finished'
[2024-04-26 19:18:10] 2024-04-26 17:17:54,252 | INFO     | this job has now completed (state=finished)
[2024-04-26 19:18:10] 2024-04-26 17:17:54,252 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-26 19:18:10] 2024-04-26 17:17:54,252 | INFO     | job 6182090789 has finished - writing final server update
[2024-04-26 19:18:10] 2024-04-26 17:17:54,252 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3296696/.job.ad'
[2024-04-26 19:18:10] 2024-04-26 17:17:54,253 | INFO     | total number of processed events: 400 (read)
[2024-04-26 19:18:10] 2024-04-26 17:17:54,255 | INFO     | executing command: lscpu
[2024-04-26 19:18:10] 2024-04-26 17:17:54,281 | INFO     | found 20 cores (10 cores per socket, 2 sockets)
[2024-04-26 19:18:10] 2024-04-26 17:17:54,281 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-26 19:18:10] 2024-04-26 17:17:54,301 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-26 19:18:10] 2024-04-26 17:17:57,090 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-26 19:18:10] 2024-04-26 17:17:57,091 | INFO     | using path: /scratch/boinc/var/slot20/slots/0/PanDA_Pilot-6182090789/memory_monitor_summary.json (trf name=prmon)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,092 | INFO     | extracted standard info from prmon json
[2024-04-26 19:18:10] 2024-04-26 17:17:57,095 | INFO     | extracted standard memory fields from prmon json
[2024-04-26 19:18:10] 2024-04-26 17:17:57,096 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-26 19:18:10] 2024-04-26 17:17:57,097 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-26 19:18:10] 2024-04-26 17:17:57,102 | INFO     | fitting pss+swap vs Time
[2024-04-26 19:18:10] 2024-04-26 17:17:57,106 | INFO     | current chi2=3.488430876687423 (change=18.61441461413791 %)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,106 | INFO     | right removable region: 219
[2024-04-26 19:18:10] 2024-04-26 17:17:57,108 | INFO     | current chi2=2.0929004623022385 (change=51.172336417181796 %)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,110 | INFO     | current chi2=0.9070073585706953 (change=56.66266146393956 %)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,112 | INFO     | current chi2=0.8459485296719698 (change=6.731900058114728 %)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,112 | INFO     | left removable region: 30
[2024-04-26 19:18:10] 2024-04-26 17:17:57,114 | INFO     | current memory leak: -0.09 B/s (using 189 data points, chi2=0.00)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,114 | INFO     | ..............................
[2024-04-26 19:18:10] 2024-04-26 17:17:57,114 | INFO     | . Timing measurements:
[2024-04-26 19:18:10] 2024-04-26 17:17:57,115 | INFO     | . get job = 0 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,115 | INFO     | . initial setup = 1 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,115 | INFO     | . payload setup = 4 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,115 | INFO     | . stage-in = 0 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,115 | INFO     | . payload execution = 13681 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,115 | INFO     | . stage-out = 0 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,115 | INFO     | . log creation = 0 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,116 | INFO     | ..............................
[2024-04-26 19:18:10] 2024-04-26 17:17:57,184 | INFO     | 
[2024-04-26 19:18:10] 2024-04-26 17:17:57,185 | INFO     | job summary report
[2024-04-26 19:18:10] 2024-04-26 17:17:57,188 | WARNING  | process 109665 is no longer using CPU - aborting
[2024-04-26 19:18:10] 2024-04-26 17:17:57,188 | INFO     | --------------------------------------------------
[2024-04-26 19:18:10] 2024-04-26 17:17:57,188 | INFO     | aborting job monitoring since job object (job id=6182090789) has expired
[2024-04-26 19:18:10] 2024-04-26 17:17:57,188 | INFO     | PanDA job id: 6182090789
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | task id: 38204375
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | errors: (none)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | pilot state: finished 
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | transexitcode: 0
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | exeerrorcode: 0
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | exeerrordiag: 
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | exitcode: 0
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | exitmsg: OK
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | cpuconsumptiontime: 51604 s
[2024-04-26 19:18:10] 2024-04-26 17:17:57,189 | INFO     | nevents: 400
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | neventsw: 0
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | pid: 109665
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | pgrp: 109665
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | corecount: 4
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | event service: False
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | sizes: {0: 2375461, 1: 2375660, 4: 2375866, 11: 2375894, 13689: 2406364, 13690: 2406363, 13692: 2415529, 13693: 2415585, 13696: 2415755}
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | --------------------------------------------------
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | 
[2024-04-26 19:18:10] 2024-04-26 17:17:57,190 | INFO     | executing command: ls -lF /scratch/boinc/var/slot20/slots/0
[2024-04-26 19:18:10] 2024-04-26 17:17:57,202 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,202 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,202 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,202 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,203 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,204 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-26 19:18:10] 2024-04-26 17:17:57,204 | INFO     | job 6182090789 has completed (purged errors)
[2024-04-26 19:18:10] 2024-04-26 17:17:57,204 | INFO     | overall cleanup function is called
[2024-04-26 19:18:10] 2024-04-26 17:17:58,210 | INFO     | --- collectZombieJob: --- 10, [109665]
[2024-04-26 19:18:10] 2024-04-26 17:17:58,210 | INFO     | zombie collector waiting for pid 109665
[2024-04-26 19:18:10] 2024-04-26 17:17:58,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-26 19:18:10] 2024-04-26 17:17:59,215 | INFO     | collected zombie processes
[2024-04-26 19:18:10] 2024-04-26 17:17:59,215 | INFO     | will now attempt to kill all subprocesses of pid=109665
[2024-04-26 19:18:10] 2024-04-26 17:17:59,319 | INFO     | process IDs to be killed: [109665] (in reverse order)
[2024-04-26 19:18:10] 2024-04-26 17:17:59,401 | WARNING  | found no corresponding commands to process id(s)
[2024-04-26 19:18:10] 2024-04-26 17:17:59,401 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-26 19:18:10] 2024-04-26 17:17:59,405 | INFO     | did not find any defunct processes belonging to 109665
[2024-04-26 19:18:10] 2024-04-26 17:17:59,408 | INFO     | did not find any defunct processes belonging to 109665
[2024-04-26 19:18:10] 2024-04-26 17:17:59,408 | INFO     | ready for new job
[2024-04-26 19:18:10] 2024-04-26 17:17:59,408 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-26 19:18:10] 2024-04-26 17:17:59,409 | INFO     | *************************************
[2024-04-26 19:18:10] 2024-04-26 17:17:59,409 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-26 19:18:10] 2024-04-26 17:17:59,410 | INFO     | *************************************
[2024-04-26 19:18:10] 2024-04-26 17:17:59,410 | INFO     | 
[2024-04-26 19:18:10] 2024-04-26 17:17:59,411 | INFO     | architecture information:
[2024-04-26 19:18:10] 2024-04-26 17:17:59,411 | INFO     | executing command: cat /etc/os-release
[2024-04-26 19:18:10] 2024-04-26 17:17:59,421 | INFO     | cat /etc/os-release:
[2024-04-26 19:18:10] NAME="CentOS Linux"
[2024-04-26 19:18:10] VERSION="7 (Core)"
[2024-04-26 19:18:10] ID="centos"
[2024-04-26 19:18:10] ID_LIKE="rhel fedora"
[2024-04-26 19:18:10] VERSION_ID="7"
[2024-04-26 19:18:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-26 19:18:10] ANSI_COLOR="0;31"
[2024-04-26 19:18:10] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-26 19:18:10] HOME_URL="https://www.centos.org/"
[2024-04-26 19:18:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-26 19:18:10] 
[2024-04-26 19:18:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-26 19:18:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-26 19:18:10] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-26 19:18:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-26 19:18:10] 
[2024-04-26 19:18:10] 2024-04-26 17:17:59,422 | INFO     | *************************************
[2024-04-26 19:18:10] 2024-04-26 17:17:59,925 | INFO     | executing command: df -mP /scratch/boinc/var/slot20/slots/0
[2024-04-26 19:18:10] 2024-04-26 17:17:59,941 | INFO     | sufficient remaining disk space (1642885808128 B)
[2024-04-26 19:18:10] 2024-04-26 17:17:59,942 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-26 19:18:10] 2024-04-26 17:17:59,942 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-26 19:18:10] 2024-04-26 17:17:59,943 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-26 19:18:10] 2024-04-26 17:18:00,158 | INFO     | all job control threads have been joined
[2024-04-26 19:18:10] 2024-04-26 17:18:00,296 | INFO     | all data control threads have been joined
[2024-04-26 19:18:10] 2024-04-26 17:18:00,676 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-26 19:18:10] 2024-04-26 17:18:00,696 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-26 19:18:10] 2024-04-26 17:18:00,696 | INFO     | aborting loop
[2024-04-26 19:18:10] 2024-04-26 17:18:00,825 | INFO     | found 0 job(s) in 20 queues
[2024-04-26 19:18:10] 2024-04-26 17:18:00,826 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-26 19:18:10] 2024-04-26 17:18:00,826 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-26 19:18:10] 2024-04-26 17:18:00,947 | INFO     | [job] retrieve thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,164 | INFO     | [job] control thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,222 | INFO     | [payload] failed_post thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,301 | INFO     | [data] control thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,308 | INFO     | [job] create_data_payload thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,379 | INFO     | [job] validate thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,385 | INFO     | [payload] validate_post thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,411 | INFO     | all payload control threads have been joined
[2024-04-26 19:18:10] 2024-04-26 17:18:01,675 | INFO     | [payload] execute_payloads thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,701 | INFO     | [job] job monitor thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,878 | INFO     | [data] copytool_in thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:01,896 | INFO     | [payload] validate_pre thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:02,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-26 19:18:10] 2024-04-26 17:18:02,359 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:02,416 | INFO     | [payload] control thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:02,681 | INFO     | [data] copytool_out thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:03,198 | INFO     | [job] queue monitor thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:03,948 | INFO     | [data] queue_monitor thread has finished
[2024-04-26 19:18:10] 2024-04-26 17:18:04,708 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 47757736719424)>', '<ExcThread(monitor, started 47757905852160)>']
[2024-04-26 19:18:10] 2024-04-26 17:18:04,846 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-26 19:18:10] 2024-04-26 17:18:04,846 | INFO     | [monitor] control thread has ended
[2024-04-26 19:18:10] 2024-04-26 17:18:09,733 | INFO     | all workflow threads have been joined
[2024-04-26 19:18:10] 2024-04-26 17:18:09,733 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-26 19:18:10] 2024-04-26 17:18:09,734 | INFO     | traces error code: 0
[2024-04-26 19:18:10] 2024-04-26 17:18:09,734 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-26 19:18:10] 2024-04-26 17:18:09,811 [wrapper] ==== pilot stdout END ====
[2024-04-26 19:18:10] 2024-04-26 17:18:09,813 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-26 19:18:10] 2024-04-26 17:18:09,815 [wrapper] pilotpid: 102750
[2024-04-26 19:18:10] 2024-04-26 17:18:09,817 [wrapper] Pilot exit status: 0
[2024-04-26 19:18:10] 2024-04-26 17:18:09,826 [wrapper] pandaids: 6182090789
[2024-04-26 19:18:10] 2024-04-26 17:18:09,881 [wrapper] cleanup: SIGTERM to supervisor_pilot  537052 102751
[2024-04-26 19:18:10] 2024-04-26 17:18:09,883 [wrapper] Test setup, not cleaning
[2024-04-26 19:18:10] 2024-04-26 17:18:09,885 [wrapper] ==== wrapper stdout END ====
[2024-04-26 19:18:10] 2024-04-26 17:18:09,887 [wrapper] ==== wrapper stderr END ====
[2024-04-26 19:18:10] 2024-04-26 17:18:09,890 [wrapper] apfmon messages muted
[2024-04-26 19:18:10]  *** Error codes and diagnostics ***
[2024-04-26 19:18:10]     "exeErrorCode": 0,
[2024-04-26 19:18:10]     "exeErrorDiag": "",
[2024-04-26 19:18:10]     "pilotErrorCode": 0,
[2024-04-26 19:18:10]     "pilotErrorDiag": "",
[2024-04-26 19:18:10]  *** Listing of results directory ***
[2024-04-26 19:18:10] total 604232
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc    462745 Apr 21 09:14 pilot3.tar.gz
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc      6720 Apr 21 09:21 queuedata.json
[2024-04-26 19:18:10] -rwx------ 1 boinc boinc     32211 Apr 21 09:22 runpilot2-wrapper.sh
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc       100 Apr 26 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-26 19:18:10] -rwxr-xr-x 1 boinc boinc      7986 Apr 26 15:29 run_atlas
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc       105 Apr 26 15:29 job.xml
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc      6457 Apr 26 15:29 init_data.xml
[2024-04-26 19:18:10] -rw-r--r-- 2 boinc boinc 449674549 Apr 26 15:29 EVNT.38204373._000026.pool.root.1
[2024-04-26 19:18:10] drwxrwx--x 2 boinc boinc      4096 Apr 26 15:29 shared
[2024-04-26 19:18:10] -rw-r--r-- 2 boinc boinc    474786 Apr 26 15:29 input.tar.gz
[2024-04-26 19:18:10] -rw-r--r-- 2 boinc boinc     17537 Apr 26 15:29 start_atlas.sh
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc         0 Apr 26 15:29 boinc_lockfile
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc      2582 Apr 26 15:29 pandaJob.out
[2024-04-26 19:18:10] -rw------- 1 boinc boinc       424 Apr 26 15:29 setup.sh.local
[2024-04-26 19:18:10] -rw------- 1 boinc boinc    997829 Apr 26 15:29 agis_schedconf.cvmfs.json
[2024-04-26 19:18:10] -rw------- 1 boinc boinc   1315307 Apr 26 15:29 cric_ddmendpoints.json
[2024-04-26 19:18:10] drwx------ 4 boinc boinc      4096 Apr 26 15:29 pilot3
[2024-04-26 19:18:10] -rw------- 1 boinc boinc        95 Apr 26 19:17 pilot_heartbeat.json
[2024-04-26 19:18:10] -rw------- 1 boinc boinc 162329614 Apr 26 19:17 HITS.38204375._000639.pool.root.1
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc       531 Apr 26 19:17 boinc_task_state.xml
[2024-04-26 19:18:10] -rw------- 1 boinc boinc      1049 Apr 26 19:17 memory_monitor_summary.json
[2024-04-26 19:18:10] -rw------- 1 boinc boinc         0 Apr 26 19:17 agis_ddmendpoints.agis.ALL.json
[2024-04-26 19:18:10] -rw------- 1 boinc boinc    330303 Apr 26 19:17 log.38204375._000639.job.log.tgz.1
[2024-04-26 19:18:10] -rw------- 1 boinc boinc      7736 Apr 26 19:17 heartbeat.json
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc      8192 Apr 26 19:18 boinc_mmap_file
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc        28 Apr 26 19:18 wrapper_checkpoint.txt
[2024-04-26 19:18:10] -rw------- 1 boinc boinc      4222 Apr 26 19:18 pilotlog.txt
[2024-04-26 19:18:10] -rw------- 1 boinc boinc   1293396 Apr 26 19:18 log.38204375._000639.job.log.1
[2024-04-26 19:18:10] -rw------- 1 boinc boinc       357 Apr 26 19:18 output.list
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc       620 Apr 26 19:18 runtime_log
[2024-04-26 19:18:10] -rw------- 1 boinc boinc   1638400 Apr 26 19:18 result.tar.gz
[2024-04-26 19:18:10] -rw------- 1 boinc boinc       658 Apr 26 19:18 wRcKDmchgI5nsSi4apGgGQJmABFKDmABFKDmRLXKDm6IMKDmTp64Nm.diag
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc     11410 Apr 26 19:18 runtime_log.err
[2024-04-26 19:18:10] -rw-r--r-- 1 boinc boinc     20779 Apr 26 19:18 stderr.txt
[2024-04-26 19:18:10] HITS file was successfully produced:
[2024-04-26 19:18:10] -rw------- 1 boinc boinc 162329614 Apr 26 19:17 shared/HITS.pool.root.1
[2024-04-26 19:18:10]  *** Contents of shared directory: ***
[2024-04-26 19:18:10] total 599756
[2024-04-26 19:18:10] -rw-r--r-- 2 boinc boinc 449674549 Apr 26 15:29 ATLAS.root_0
[2024-04-26 19:18:10] -rw-r--r-- 2 boinc boinc    474786 Apr 26 15:29 input.tar.gz
[2024-04-26 19:18:10] -rw-r--r-- 2 boinc boinc     17537 Apr 26 15:29 start_atlas.sh
[2024-04-26 19:18:10] -rw------- 1 boinc boinc 162329614 Apr 26 19:17 HITS.pool.root.1
[2024-04-26 19:18:10] -rw------- 1 boinc boinc   1638400 Apr 26 19:18 result.tar.gz
19:18:12 (98130): run_atlas exited; CPU time 51380.766667
19:18:12 (98130): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN