Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:42:06 (36828): wrapper (7.7.26015): starting
00:42:06 (36828): wrapper: running run_atlas (--nthreads 4)
[2024-04-25 00:42:06] Arguments: --nthreads 4
[2024-04-25 00:42:06] Threads: 4
[2024-04-25 00:42:06] Checking for CVMFS
[2024-04-25 00:42:06] No cvmfs_config command found, will try listing directly
[2024-04-25 00:42:06] CVMFS is ok
[2024-04-25 00:42:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-25 00:42:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-25 00:42:06] Further information can be found at the LHC@home message board.
[2024-04-25 00:42:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-25 00:42:06] Checking for apptainer binary...
[2024-04-25 00:42:06] which: no apptainer in ((null))
[2024-04-25 00:42:06] apptainer is not installed, using version from CVMFS
[2024-04-25 00:42:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-25 00:42:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-04-25 00:42:07] apptainer works
[2024-04-25 00:42:07] Set ATHENA_PROC_NUMBER=4
[2024-04-25 00:42:07] Set ATHENA_CORE_NUMBER=4
[2024-04-25 00:42:07] Starting ATLAS job with PandaID=6180948350
[2024-04-25 00:42:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-25 03:31:06]  *** The last 200 lines of the pilot log: ***
[2024-04-25 03:31:06]  filesize=280968
[2024-04-25 03:31:06]  filetype=log
[2024-04-25 03:31:06]  guid=ff0472f0-cf5a-4de0-8097-7b4660f8a541
[2024-04-25 03:31:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-04-25 03:31:06]  is_tar=False
[2024-04-25 03:31:06]  lfn=log.38204279._010887.job.log.tgz.1
[2024-04-25 03:31:06]  mtime=0
[2024-04-25 03:31:06]  protocol_id=None
[2024-04-25 03:31:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-04-25 03:31:06]  replicas=None
[2024-04-25 03:31:06]  scope=mc23_13p6TeV
[2024-04-25 03:31:06]  status=None
[2024-04-25 03:31:06]  status_code=0
[2024-04-25 03:31:06]  storage_token=
[2024-04-25 03:31:06]  surl=/scratch/boinc/var/slot88/slots/0/PanDA_Pilot-6180948350/log.38204279._010887.job.log.tgz.1
[2024-04-25 03:31:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1e/7d/log.38204279._010887.job.log.tgz.1
[2024-04-25 03:31:06]  workdir=None
[2024-04-25 03:31:06] ]
[2024-04-25 03:31:06] 2024-04-25 01:30:41,497 | INFO     | transferring file log.38204279._010887.job.log.tgz.1 from /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-6180948350/log.38204279._010887.job.log.tgz.1 to /scratch/b
[2024-04-25 03:31:06] 2024-04-25 01:30:41,497 | INFO     | executing command: /usr/bin/env mv /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-6180948350/log.38204279._010887.job.log.tgz.1 /scratch/boinc/var/slot88/slots/0/lo
[2024-04-25 03:31:06] 2024-04-25 01:30:41,520 | INFO     | adding to output.list: log.38204279._010887.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1e/7d/log.38204279._010887.job.log.tg
[2024-04-25 03:31:06] 2024-04-25 01:30:41,521 | INFO     | summary of transferred files:
[2024-04-25 03:31:06] 2024-04-25 01:30:41,521 | INFO     |  -- lfn=log.38204279._010887.job.log.tgz.1, status_code=0, status=transferred
[2024-04-25 03:31:06] 2024-04-25 01:30:41,522 | INFO     | stage-out finished correctly
[2024-04-25 03:31:06] 2024-04-25 01:30:41,736 | INFO     | monitor loop #764: job 0:6180948350 is in state 'finished'
[2024-04-25 03:31:06] 2024-04-25 01:30:41,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-25 03:31:06] 2024-04-25 01:30:43,480 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-04-25 03:31:06] 2024-04-25 01:30:44,239 | INFO     | monitor loop #765: job 0:6180948350 is in state 'finished'
[2024-04-25 03:31:06] 2024-04-25 01:30:44,239 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-25 03:31:06] 2024-04-25 01:30:45,462 | INFO     | job 6180948350 has state=finished
[2024-04-25 03:31:06] 2024-04-25 01:30:45,462 | INFO     | preparing for final server update for job 6180948350 in state='finished'
[2024-04-25 03:31:06] 2024-04-25 01:30:45,463 | INFO     | this job has now completed (state=finished)
[2024-04-25 03:31:06] 2024-04-25 01:30:45,463 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-04-25 03:31:06] 2024-04-25 01:30:45,463 | INFO     | job 6180948350 has finished - writing final server update
[2024-04-25 03:31:06] 2024-04-25 01:30:45,464 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3266429/.job.ad'
[2024-04-25 03:31:06] 2024-04-25 01:30:45,464 | INFO     | total number of processed events: 400 (read)
[2024-04-25 03:31:06] 2024-04-25 01:30:45,471 | INFO     | executing command: lscpu
[2024-04-25 03:31:06] 2024-04-25 01:30:45,518 | INFO     | found 64 cores (32 cores per socket, 2 sockets)
[2024-04-25 03:31:06] 2024-04-25 01:30:45,518 | INFO     | executing command: grep -o 'avx2[^ ]*\|AVX2[^ ]*' /proc/cpuinfo
[2024-04-25 03:31:06] 2024-04-25 01:30:45,569 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-04-25 03:31:06] 2024-04-25 01:30:46,742 | INFO     | monitor loop #766: job 0:6180948350 is in state 'finished'
[2024-04-25 03:31:06] 2024-04-25 01:30:46,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-25 03:31:06] 2024-04-25 01:30:49,248 | INFO     | monitor loop #767: job 0:6180948350 is in state 'finished'
[2024-04-25 03:31:06] 2024-04-25 01:30:49,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,062 | INFO     | CPU arch script returned: x86-64-v3
[2024-04-25 03:31:06] 2024-04-25 01:30:51,062 | INFO     | using path: /scratch/boinc/var/slot88/slots/0/PanDA_Pilot-6180948350/memory_monitor_summary.json (trf name=prmon)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,063 | INFO     | extracted standard info from prmon json
[2024-04-25 03:31:06] 2024-04-25 01:30:51,063 | INFO     | extracted standard memory fields from prmon json
[2024-04-25 03:31:06] 2024-04-25 01:30:51,064 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-04-25 03:31:06] 2024-04-25 01:30:51,064 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-04-25 03:31:06] 2024-04-25 01:30:51,067 | INFO     | fitting pss+swap vs Time
[2024-04-25 03:31:06] 2024-04-25 01:30:51,069 | INFO     | current chi2=1.3066673425793645 (change=38.532206288810436 %)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,071 | INFO     | current chi2=1.3075868963745552 (change=-0.07037397853500395 %)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,071 | INFO     | right removable region: 155
[2024-04-25 03:31:06] 2024-04-25 01:30:51,072 | INFO     | current chi2=0.8439609632543614 (change=60.29867993240594 %)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,073 | INFO     | current chi2=0.8442995343390166 (change=-0.04011691291379546 %)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,073 | INFO     | left removable region: 20
[2024-04-25 03:31:06] 2024-04-25 01:30:51,074 | INFO     | current memory leak: 0.52 B/s (using 135 data points, chi2=0.00)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,074 | INFO     | ..............................
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . Timing measurements:
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . get job = 0 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . initial setup = 1 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . payload setup = 6 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . stage-in = 0 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . payload execution = 10077 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . stage-out = 0 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | . log creation = 0 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,075 | INFO     | ..............................
[2024-04-25 03:31:06] 2024-04-25 01:30:51,158 | INFO     | 
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | job summary report
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | --------------------------------------------------
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | PanDA job id: 6180948350
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | task id: 38204279
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | errors: (none)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | status: LOG_TRANSFER = DONE 
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | pilot state: finished 
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | transexitcode: 0
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | exeerrorcode: 0
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | exeerrordiag: 
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | exitcode: 0
[2024-04-25 03:31:06] 2024-04-25 01:30:51,159 | INFO     | exitmsg: OK
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | cpuconsumptiontime: 39417 s
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | nevents: 400
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | neventsw: 0
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | pid: 51457
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | pgrp: 51457
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | corecount: 4
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | event service: False
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | sizes: {0: 2374022, 1: 2375569, 6: 2375775, 12: 2375803, 10087: 2404388, 10088: 2413370, 10089: 2413554, 10097: 2413724}
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | --------------------------------------------------
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | 
[2024-04-25 03:31:06] 2024-04-25 01:30:51,160 | INFO     | executing command: ls -lF /scratch/boinc/var/slot88/slots/0
[2024-04-25 03:31:06] 2024-04-25 01:30:51,186 | INFO     | queue jobs had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue payloads had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue data_in had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue data_out had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue completed_jobids has 1 job(s)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | queue messages had 0 job(s) [purged]
[2024-04-25 03:31:06] 2024-04-25 01:30:51,188 | INFO     | job 6180948350 has completed (purged errors)
[2024-04-25 03:31:06] 2024-04-25 01:30:51,189 | INFO     | overall cleanup function is called
[2024-04-25 03:31:06] 2024-04-25 01:30:52,196 | INFO     | --- collectZombieJob: --- 10, [51457]
[2024-04-25 03:31:06] 2024-04-25 01:30:52,196 | INFO     | zombie collector waiting for pid 51457
[2024-04-25 03:31:06] 2024-04-25 01:30:52,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-04-25 03:31:06] 2024-04-25 01:30:52,396 | INFO     | 10115s have passed since pilot start
[2024-04-25 03:31:06] 2024-04-25 01:30:53,201 | INFO     | collected zombie processes
[2024-04-25 03:31:06] 2024-04-25 01:30:53,201 | INFO     | will now attempt to kill all subprocesses of pid=51457
[2024-04-25 03:31:06] 2024-04-25 01:30:53,511 | INFO     | process IDs to be killed: [51457] (in reverse order)
[2024-04-25 03:31:06] 2024-04-25 01:30:53,721 | WARNING  | found no corresponding commands to process id(s)
[2024-04-25 03:31:06] 2024-04-25 01:30:53,721 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-04-25 03:31:06] 2024-04-25 01:30:53,740 | INFO     | did not find any defunct processes belonging to 51457
[2024-04-25 03:31:06] 2024-04-25 01:30:53,751 | INFO     | did not find any defunct processes belonging to 51457
[2024-04-25 03:31:06] 2024-04-25 01:30:53,751 | INFO     | ready for new job
[2024-04-25 03:31:06] 2024-04-25 01:30:53,751 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-04-25 03:31:06] 2024-04-25 01:30:53,753 | INFO     | *************************************
[2024-04-25 03:31:06] 2024-04-25 01:30:53,753 | INFO     | ***  PanDA Pilot version 3.7.2.4  ***
[2024-04-25 03:31:06] 2024-04-25 01:30:53,753 | INFO     | *************************************
[2024-04-25 03:31:06] 2024-04-25 01:30:53,753 | INFO     | 
[2024-04-25 03:31:06] 2024-04-25 01:30:53,758 | INFO     | architecture information:
[2024-04-25 03:31:06] 2024-04-25 01:30:53,758 | INFO     | executing command: cat /etc/os-release
[2024-04-25 03:31:06] 2024-04-25 01:30:53,777 | INFO     | cat /etc/os-release:
[2024-04-25 03:31:06] NAME="CentOS Linux"
[2024-04-25 03:31:06] VERSION="7 (Core)"
[2024-04-25 03:31:06] ID="centos"
[2024-04-25 03:31:06] ID_LIKE="rhel fedora"
[2024-04-25 03:31:06] VERSION_ID="7"
[2024-04-25 03:31:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-04-25 03:31:06] ANSI_COLOR="0;31"
[2024-04-25 03:31:06] CPE_NAME="cpe:/o:centos:centos:7"
[2024-04-25 03:31:06] HOME_URL="https://www.centos.org/"
[2024-04-25 03:31:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-04-25 03:31:06] 
[2024-04-25 03:31:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-04-25 03:31:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-04-25 03:31:06] REDHAT_SUPPORT_PRODUCT="centos"
[2024-04-25 03:31:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-04-25 03:31:06] 
[2024-04-25 03:31:06] 2024-04-25 01:30:53,778 | INFO     | *************************************
[2024-04-25 03:31:06] 2024-04-25 01:30:54,280 | INFO     | executing command: df -mP /scratch/boinc/var/slot88/slots/0
[2024-04-25 03:31:06] 2024-04-25 01:30:54,303 | INFO     | sufficient remaining disk space (3166479319040 B)
[2024-04-25 03:31:06] 2024-04-25 01:30:54,303 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-04-25 03:31:06] 2024-04-25 01:30:54,303 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-04-25 03:31:06] 2024-04-25 01:30:54,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-25 03:31:06] 2024-04-25 01:30:54,304 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-25 03:31:06] 2024-04-25 01:30:54,305 | INFO     | found 0 job(s) in 20 queues
[2024-04-25 03:31:06] 2024-04-25 01:30:54,305 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-25 03:31:06] 2024-04-25 01:30:54,305 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-04-25 03:31:06] 2024-04-25 01:30:54,429 | INFO     | all job control threads have been joined
[2024-04-25 03:31:06] 2024-04-25 01:30:54,572 | INFO     | all payload control threads have been joined
[2024-04-25 03:31:06] 2024-04-25 01:30:54,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-04-25 03:31:06] 2024-04-25 01:30:54,660 | INFO     | all data control threads have been joined
[2024-04-25 03:31:06] 2024-04-25 01:30:55,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-25 03:31:06] 2024-04-25 01:30:55,263 | INFO     | aborting loop
[2024-04-25 03:31:06] 2024-04-25 01:30:55,309 | INFO     | [job] retrieve thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:55,434 | INFO     | [job] control thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:55,485 | INFO     | [payload] run_realtimelog thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:55,559 | INFO     | [job] validate thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:55,578 | INFO     | [payload] control thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:55,665 | INFO     | [data] control thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:55,957 | INFO     | [job] create_data_payload thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:56,033 | INFO     | [payload] validate_pre thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:56,166 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-25 03:31:06] 2024-04-25 01:30:56,225 | INFO     | [payload] validate_post thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:56,268 | INFO     | [job] job monitor thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:56,618 | INFO     | [data] copytool_out thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:56,713 | INFO     | [payload] execute_payloads thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:56,757 | INFO     | [data] copytool_in thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:56,870 | INFO     | [payload] failed_post thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:57,171 | INFO     | [job] queue monitor thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:30:58,311 | INFO     | [data] queue_monitor thread has finished
[2024-04-25 03:31:06] 2024-04-25 01:31:00,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 46937689703488)>', '<ExcThread(monitor, started 46937867241216)>']
[2024-04-25 03:31:06] 2024-04-25 01:31:00,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-04-25 03:31:06] 2024-04-25 01:31:00,336 | INFO     | [monitor] control thread has ended
[2024-04-25 03:31:06] 2024-04-25 01:31:05,151 | INFO     | all workflow threads have been joined
[2024-04-25 03:31:06] 2024-04-25 01:31:05,151 | INFO     | end of generic workflow (traces error code: 0)
[2024-04-25 03:31:06] 2024-04-25 01:31:05,151 | INFO     | traces error code: 0
[2024-04-25 03:31:06] 2024-04-25 01:31:05,152 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-04-25 03:31:06] 2024-04-25 01:31:05,230 [wrapper] ==== pilot stdout END ====
[2024-04-25 03:31:06] 2024-04-25 01:31:05,233 [wrapper] ==== wrapper stdout RESUME ====
[2024-04-25 03:31:06] 2024-04-25 01:31:05,235 [wrapper] pilotpid: 41493
[2024-04-25 03:31:06] 2024-04-25 01:31:05,237 [wrapper] Pilot exit status: 0
[2024-04-25 03:31:06] 2024-04-25 01:31:05,245 [wrapper] pandaids: 6180948350
[2024-04-25 03:31:06] 2024-04-25 01:31:05,335 [wrapper] cleanup: SIGTERM to supervisor_pilot 1144804 41494
[2024-04-25 03:31:06] 2024-04-25 01:31:05,337 [wrapper] Test setup, not cleaning
[2024-04-25 03:31:06] 2024-04-25 01:31:05,339 [wrapper] ==== wrapper stdout END ====
[2024-04-25 03:31:06] 2024-04-25 01:31:05,341 [wrapper] ==== wrapper stderr END ====
[2024-04-25 03:31:06] 2024-04-25 01:31:05,344 [wrapper] apfmon messages muted
[2024-04-25 03:31:06]  *** Error codes and diagnostics ***
[2024-04-25 03:31:06]     "exeErrorCode": 0,
[2024-04-25 03:31:06]     "exeErrorDiag": "",
[2024-04-25 03:31:06]     "pilotErrorCode": 0,
[2024-04-25 03:31:06]     "pilotErrorDiag": "",
[2024-04-25 03:31:06]  *** Listing of results directory ***
[2024-04-25 03:31:06] total 616624
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc    462745 Apr 20 02:22 pilot3.tar.gz
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc      6720 Apr 20 02:27 queuedata.json
[2024-04-25 03:31:06] -rwx------ 1 boinc boinc     32211 Apr 20 02:28 runpilot2-wrapper.sh
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc       100 Apr 25 00:41 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-25 03:31:06] -rwxr-xr-x 1 boinc boinc      7986 Apr 25 00:41 run_atlas
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc       105 Apr 25 00:41 job.xml
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc      6644 Apr 25 00:42 init_data.xml
[2024-04-25 03:31:06] -rw-r--r-- 2 boinc boinc 452562240 Apr 25 00:42 EVNT.38204277._000434.pool.root.1
[2024-04-25 03:31:06] drwxrwx--x 2 boinc boinc      4096 Apr 25 00:42 shared
[2024-04-25 03:31:06] -rw-r--r-- 2 boinc boinc    474800 Apr 25 00:42 input.tar.gz
[2024-04-25 03:31:06] -rw-r--r-- 2 boinc boinc     17537 Apr 25 00:42 start_atlas.sh
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc         0 Apr 25 00:42 boinc_lockfile
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc      2584 Apr 25 00:42 pandaJob.out
[2024-04-25 03:31:06] -rw------- 1 boinc boinc       424 Apr 25 00:42 setup.sh.local
[2024-04-25 03:31:06] -rw------- 1 boinc boinc    990260 Apr 25 00:42 agis_schedconf.cvmfs.json
[2024-04-25 03:31:06] -rw------- 1 boinc boinc         0 Apr 25 00:42 agis_ddmendpoints.agis.ALL.json
[2024-04-25 03:31:06] -rw------- 1 boinc boinc   1315027 Apr 25 00:42 cric_ddmendpoints.json
[2024-04-25 03:31:06] drwx------ 4 boinc boinc      4096 Apr 25 00:42 pilot3
[2024-04-25 03:31:06] -rw------- 1 boinc boinc 172921162 Apr 25 03:30 HITS.38204279._010887.pool.root.1
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc       531 Apr 25 03:30 boinc_task_state.xml
[2024-04-25 03:31:06] -rw------- 1 boinc boinc      1039 Apr 25 03:30 memory_monitor_summary.json
[2024-04-25 03:31:06] -rw------- 1 boinc boinc    280968 Apr 25 03:30 log.38204279._010887.job.log.tgz.1
[2024-04-25 03:31:06] -rw------- 1 boinc boinc      7702 Apr 25 03:30 heartbeat.json
[2024-04-25 03:31:06] -rw------- 1 boinc boinc        95 Apr 25 03:30 pilot_heartbeat.json
[2024-04-25 03:31:06] -rw------- 1 boinc boinc      4345 Apr 25 03:31 pilotlog.txt
[2024-04-25 03:31:06] -rw------- 1 boinc boinc    947650 Apr 25 03:31 log.38204279._010887.job.log.1
[2024-04-25 03:31:06] -rw------- 1 boinc boinc       357 Apr 25 03:31 output.list
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc       620 Apr 25 03:31 runtime_log
[2024-04-25 03:31:06] -rw------- 1 boinc boinc   1249280 Apr 25 03:31 result.tar.gz
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc     11410 Apr 25 03:31 runtime_log.err
[2024-04-25 03:31:06] -rw------- 1 boinc boinc       656 Apr 25 03:31 fhNLDm5lDI5nsSi4apGgGQJmABFKDmABFKDmRLXKDmPFKKDmeAyCVm.diag
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc      8192 Apr 25 03:31 boinc_mmap_file
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc        28 Apr 25 03:31 wrapper_checkpoint.txt
[2024-04-25 03:31:06] -rw-r--r-- 1 boinc boinc     21315 Apr 25 03:31 stderr.txt
[2024-04-25 03:31:06] HITS file was successfully produced:
[2024-04-25 03:31:06] -rw------- 1 boinc boinc 172921162 Apr 25 03:30 shared/HITS.pool.root.1
[2024-04-25 03:31:06]  *** Contents of shared directory: ***
[2024-04-25 03:31:06] total 612540
[2024-04-25 03:31:06] -rw-r--r-- 2 boinc boinc 452562240 Apr 25 00:42 ATLAS.root_0
[2024-04-25 03:31:06] -rw-r--r-- 2 boinc boinc    474800 Apr 25 00:42 input.tar.gz
[2024-04-25 03:31:06] -rw-r--r-- 2 boinc boinc     17537 Apr 25 00:42 start_atlas.sh
[2024-04-25 03:31:06] -rw------- 1 boinc boinc 172921162 Apr 25 03:30 HITS.pool.root.1
[2024-04-25 03:31:06] -rw------- 1 boinc boinc   1249280 Apr 25 03:31 result.tar.gz
03:31:07 (36828): run_atlas exited; CPU time 39163.835347
03:31:07 (36828): called boinc_finish(0)

</stderr_txt>
]]>

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