| Name | Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn_0 |
| Workunit | 222231793 |
| Created | 19 Apr 2024, 16:54:22 UTC |
| Sent | 19 Apr 2024, 20:27:13 UTC |
| Report deadline | 27 Apr 2024, 20:27:13 UTC |
| Received | 24 Apr 2024, 21:32:29 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 10689045 |
| Run time | 32 min 29 sec |
| CPU time | 9 hours 42 min 27 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 17.95 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.37 GB |
| Peak swap size | 2.91 GB |
| Peak disk usage | 1.27 GB |
Stderr output
<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
16:37:33 (488972): wrapper (7.7.26015): starting
16:37:33 (488972): wrapper: running run_atlas (--nthreads 4)
[2024-04-21 16:37:33] Arguments: --nthreads 4
[2024-04-21 16:37:33] Threads: 4
[2024-04-21 16:37:33] Checking for CVMFS
[2024-04-21 16:37:33] No cvmfs_config command found, will try listing directly
[2024-04-21 16:37:33] CVMFS is ok
[2024-04-21 16:37:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-21 16:37:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-21 16:37:33] Further information can be found at the LHC@home message board.
[2024-04-21 16:37:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-21 16:37:33] Checking for apptainer binary...
[2024-04-21 16:37:33] which: no apptainer in ((null))
[2024-04-21 16:37:33] apptainer is not installed, using version from CVMFS
[2024-04-21 16:37:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-21 16:37:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-04-21 16:37:34] apptainer works
[2024-04-21 16:37:34] Set ATHENA_PROC_NUMBER=4
[2024-04-21 16:37:34] Set ATHENA_CORE_NUMBER=4
[2024-04-21 16:37:34] Starting ATLAS job with PandaID=6180929259
[2024-04-21 16:37:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:55:39 (3366214): wrapper (7.7.26015): starting
12:55:39 (3366214): wrapper: running run_atlas (--nthreads 4)
[2024-04-22 12:55:39] Arguments: --nthreads 4
[2024-04-22 12:55:39] Threads: 4
[2024-04-22 12:55:39] This job has been restarted, cleaning up previous attempt
[2024-04-22 12:55:39] Checking for CVMFS
[2024-04-22 12:55:39] No cvmfs_config command found, will try listing directly
[2024-04-22 12:55:39] CVMFS is ok
[2024-04-22 12:55:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-22 12:55:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-22 12:55:39] Further information can be found at the LHC@home message board.
[2024-04-22 12:55:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-22 12:55:39] Checking for apptainer binary...
[2024-04-22 12:55:39] which: no apptainer in ((null))
[2024-04-22 12:55:39] apptainer is not installed, using version from CVMFS
[2024-04-22 12:55:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-22 12:55:40] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-04-22 12:55:40] apptainer works
[2024-04-22 12:55:40] Set ATHENA_PROC_NUMBER=4
[2024-04-22 12:55:40] Set ATHENA_CORE_NUMBER=4
[2024-04-22 12:55:40] Starting ATLAS job with PandaID=6180929259
[2024-04-22 12:55:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-22 13:02:42] Job failed
[2024-04-22 13:02:42] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2024-04-22 13:02:42] ++ pwd
[2024-04-22 13:02:42] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot88/slots/0/
[2024-04-22 13:02:42] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot88/slots/0/
[2024-04-22 13:02:42] + mv ATLAS.root_0 EVNT.38204341._000306.pool.root.1
[2024-04-22 13:02:42] mv: 'ATLAS.root_0' and 'EVNT.38204341._000306.pool.root.1' are the same file
[2024-04-22 13:02:42] + tar --strip-components=5 -xvf input.tar.gz
[2024-04-22 13:02:42] + umask 077
[2024-04-22 13:02:42] ++ date +%s
[2024-04-22 13:02:42] + ACCOUNTING_STARTTIME=1713783340
[2024-04-22 13:02:42] + echo 'Detecting resource accounting method available for the job.'
[2024-04-22 13:02:42] Detecting resource accounting method available for the job.
[2024-04-22 13:02:42] + JOB_ACCOUNTING=
[2024-04-22 13:02:42] + command -v arc-job-cgroup
[2024-04-22 13:02:42] + '[' -z '' ']'
[2024-04-22 13:02:42] + GNU_TIME=/usr/bin/time
[2024-04-22 13:02:42] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-04-22 13:02:42] Looking for /usr/bin/time tool for accounting measurements
[2024-04-22 13:02:42] + '[' '!' -z /usr/bin/time ']'
[2024-04-22 13:02:42] + /usr/bin/time --version
[2024-04-22 13:02:42] + echo 'GNU time found and will be used for job accounting.'
[2024-04-22 13:02:42] GNU time found and will be used for job accounting.
[2024-04-22 13:02:42] + JOB_ACCOUNTING=gnutime
[2024-04-22 13:02:42] + '[' -z gnutime ']'
[2024-04-22 13:02:42] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-04-22 13:02:42] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-04-22 13:02:42] + export GTAG=http://aipanda403.cern.ch/data/jobs/2024-04-19/BOINC_MCORE/6180929259.out
[2024-04-22 13:02:42] + GTAG=http://aipanda403.cern.ch/data/jobs/2024-04-19/BOINC_MCORE/6180929259.out
[2024-04-22 13:02:42] + export PILOT_NOKILL=YES
[2024-04-22 13:02:42] + PILOT_NOKILL=YES
[2024-04-22 13:02:42] + export GRID_GLOBAL_JOBID=Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-22 13:02:42] + GRID_GLOBAL_JOBID=Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-22 13:02:42] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-22 13:02:42] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-22 13:02:42] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-04-22 13:02:42] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-04-22 13:02:42] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-04-22 13:02:42] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-04-22 13:02:42] ++ pwd
[2024-04-22 13:02:42] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot88/slots/0
[2024-04-22 13:02:42] + RUNTIME_JOB_STDIN=/dev/null
[2024-04-22 13:02:42] ++ pwd
[2024-04-22 13:02:42] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot88/slots/0/log.38204343._007444.job.log.1
[2024-04-22 13:02:42] ++ pwd
[2024-04-22 13:02:42] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot88/slots/0/log.38204343._007444.job.log.1
[2024-04-22 13:02:42] ++ pwd
[2024-04-22 13:02:42] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot88/slots/0.diag
[2024-04-22 13:02:42] + '[' '!' -z '' ']'
[2024-04-22 13:02:42] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-04-22 13:02:42] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-04-22 13:02:42] + RUNTIME_FRONTEND_SEES_NODE=
[2024-04-22 13:02:42] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-04-22 13:02:42] + '[' '!' -z '' ']'
[2024-04-22 13:02:42] + '[' -z yes ']'
[2024-04-22 13:02:42] ++ pwd
[2024-04-22 13:02:42] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-22 13:02:42] + runtimeenvironments=
[2024-04-22 13:02:42] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-04-22 13:02:42] + RTE_function_0 1
[2024-04-22 13:02:42] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-22 13:02:42] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-22 13:02:42] + export BOINC_APP=ATLAS
[2024-04-22 13:02:42] + BOINC_APP=ATLAS
[2024-04-22 13:02:42] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-22 13:02:42] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-22 13:02:42] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-22 13:02:42] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-22 13:02:42] + '[' -z 1 ']'
[2024-04-22 13:02:42] + '[' 1 == 1 ']'
[2024-04-22 13:02:42] + shift
[2024-04-22 13:02:42] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-04-22 13:02:42] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-22 13:02:42] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-04-22 13:02:42] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot88/slots/0/
[2024-04-22 13:02:42] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot88/slots/0/
[2024-04-22 13:02:42] + '[' -e /scratch/boinc/var/slot88/slots/0/init_data.xml ']'
[2024-04-22 13:02:42] + grep '<use_http_proxy/>' /scratch/boinc/var/slot88/slots/0/init_data.xml
[2024-04-22 13:02:42] + '[' -e /scratch/boinc/var/slot88/slots/0/init_data.xml ']'
[2024-04-22 13:02:42] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot88/slots/0/init_data.xml
[2024-04-22 13:02:42] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-04-22 13:02:42] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-22 13:02:42] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-04-22 13:02:42] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-22 13:02:42] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-22 13:02:42] + '[' 0 -ne 0 ']'
[2024-04-22 13:02:42] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-04-22 13:02:42] + '[' -f /etc/os-release ']'
[2024-04-22 13:02:42] +++ cat /etc/os-release
[2024-04-22 13:02:42] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-04-22 13:02:42] +++ NAME='CentOS Linux'
[2024-04-22 13:02:42] +++ VERSION='7 (Core)'
[2024-04-22 13:02:42] +++ ID=centos
[2024-04-22 13:02:42] +++ ID_LIKE='rhel fedora'
[2024-04-22 13:02:42] +++ VERSION_ID=7
[2024-04-22 13:02:42] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-04-22 13:02:42] +++ ANSI_COLOR='0;31'
[2024-04-22 13:02:42] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-04-22 13:02:42] +++ HOME_URL=https://www.centos.org/
[2024-04-22 13:02:42] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-04-22 13:02:42] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-04-22 13:02:42] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-04-22 13:02:42] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-04-22 13:02:42] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-04-22 13:02:42] ++ echo 'CentOS Linux 7 (Core)'
[2024-04-22 13:02:42] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-04-22 13:02:42] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-04-22 13:02:42] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-04-22 13:02:42] + HOME=/scratch/boinc/var/slot88/slots/0
[2024-04-22 13:02:42] + export HOME
[2024-04-22 13:02:42] + cd /scratch/boinc/var/slot88/slots/0
[2024-04-22 13:02:42] + '[' '!' -z '' ']'
[2024-04-22 13:02:42] + '[' -z '' ']'
[2024-04-22 13:02:42] ++ /bin/hostname -f
[2024-04-22 13:02:42] + nodename=skurut14.grid.cesnet.cz
[2024-04-22 13:02:42] + echo nodename=skurut14.grid.cesnet.cz
[2024-04-22 13:02:42] + echo Processors=1
[2024-04-22 13:02:42] + echo Benchmark=HEPSPEC:1.0
[2024-04-22 13:02:42] + executable=./runpilot2-wrapper.sh
[2024-04-22 13:02:42] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-04-22 13:02:42] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-04-22 13:02:42] ++ tr -d '\0'
[2024-04-22 13:02:42] ++ head -n 1
[2024-04-22 13:02:42] + line1='#!/bin/bash'
[2024-04-22 13:02:42] ++ sed -n 's/^#! *//p'
[2024-04-22 13:02:42] ++ echo '#!/bin/bash'
[2024-04-22 13:02:42] + shebang=/bin/bash
[2024-04-22 13:02:42] ++ echo /bin/bash
[2024-04-22 13:02:42] ++ awk '{print $1}'
[2024-04-22 13:02:42] + interpreter=/bin/bash
[2024-04-22 13:02:42] + '[' /bin/bash = /usr/bin/env ']'
[2024-04-22 13:02:42] + '[' x/bin/bash = x ']'
[2024-04-22 13:02:42] + type /bin/bash
[2024-04-22 13:02:42] + '[' xgnutime = xgnutime ']'
[2024-04-22 13:02:42] + /usr/bin/time -o /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.2.4 -z -t --piloturl local --mute --container
[2024-04-22 13:02:42] + RESULT=2
[2024-04-22 13:02:42] + sed -i -e /nodename=/d /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-22 13:02:42] ++ grep domain_name init_data.xml
[2024-04-22 13:02:42] ++ awk -F '>' '{print $2}'
[2024-04-22 13:02:42] ++ awk -F '<' '{print $1}'
[2024-04-22 13:02:42] ++ sed -e 's# #_#g'
[2024-04-22 13:02:42] + hostname=skurut14.grid.cesnet.cz
[2024-04-22 13:02:42] ++ grep user_name init_data.xml
[2024-04-22 13:02:42] ++ awk -F '>' '{print $2}'
[2024-04-22 13:02:42] ++ awk -F '<' '{print $1}'
[2024-04-22 13:02:42] ++ sed -e 's# #_#g'
[2024-04-22 13:02:42] + username=praguelcg2
[2024-04-22 13:02:42] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2024-04-22 13:02:42] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2024-04-22 13:02:42] + '[' -n 4 ']'
[2024-04-22 13:02:42] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-22 13:02:42] + echo exitcode=2
[2024-04-22 13:02:42] + runtimeenvironments=
[2024-04-22 13:02:42] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-04-22 13:02:42] + RTE_function_0 2
[2024-04-22 13:02:42] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-22 13:02:42] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-22 13:02:42] + export BOINC_APP=ATLAS
[2024-04-22 13:02:42] + BOINC_APP=ATLAS
[2024-04-22 13:02:42] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-22 13:02:42] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-22 13:02:42] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-22 13:02:42] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-22 13:02:42] + '[' -z 2 ']'
[2024-04-22 13:02:42] + '[' 2 == 1 ']'
[2024-04-22 13:02:42] + '[' 0 -ne 0 ']'
[2024-04-22 13:02:42] + echo 'zip all output files'
[2024-04-22 13:02:42] + flist='*.diag '
[2024-04-22 13:02:42] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-22 13:02:42] + '[' -e ./heartbeat.json ']'
[2024-04-22 13:02:42] + flist='*.diag ./heartbeat.json'
[2024-04-22 13:02:42] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-22 13:02:42] + '[' -e ./output.list ']'
[2024-04-22 13:02:42] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-22 13:02:42] + '[' -e ./log.38204343._007444.job.log.1 ']'
[2024-04-22 13:02:42] + flist='*.diag ./heartbeat.json ./log.38204343._007444.job.log.1'
[2024-04-22 13:02:42] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-22 13:02:42] + '[' -e ./log.38204343._007444.job.log.1 ']'
[2024-04-22 13:02:42] + flist='*.diag ./heartbeat.json ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1'
[2024-04-22 13:02:42] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-22 13:02:42] + '[' -e ./gmlog/ ']'
[2024-04-22 13:02:42] + '[' -f output.list ']'
[2024-04-22 13:02:42] + tar cvf result.tar.gz Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag ./heartbeat.json ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1
[2024-04-22 13:02:42] + '[' xgnutime = xcgroup ']'
[2024-04-22 13:02:42] + '[' -n '' ']'
[2024-04-22 13:02:42] + '[' -n '' ']'
[2024-04-22 13:02:42] ++ date +%s
[2024-04-22 13:02:42] + ACCOUNTING_ENDTIME=1713783529
[2024-04-22 13:02:42] ++ date -d '1970-01-01 UTC 1713783340 seconds' +%Y%m%d%H%M%SZ
[2024-04-22 13:02:42] + echo LRMSStartTime=20240422125540Z
[2024-04-22 13:02:42] ++ date -d '1970-01-01 UTC 1713783529 seconds' +%Y%m%d%H%M%SZ
[2024-04-22 13:02:42] + echo LRMSEndTime=20240422125849Z
[2024-04-22 13:02:42] + echo walltime=189
[2024-04-22 13:02:42] + echo exitcode=2
[2024-04-22 13:02:42] + exit 2
[2024-04-22 13:02:42] ./runtime_log
[2024-04-22 13:02:42] ./PanDA_Pilot-6180929259/log.EVNTtoHITS
[2024-04-22 13:02:42] ./PanDA_Pilot-6180929259/prmon.log
[2024-04-22 13:02:42] ./PanDA_Pilot-6180929259/PoolFileCatalog.xml
[2024-04-22 13:02:42] ./PanDA_Pilot-6180929259/pilotlog.txt
[2024-04-22 13:02:42] ./runtime_log.err
[2024-04-22 13:02:42] ./log.38204343._007444.job.log.1
[2024-04-22 13:02:42] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-04-22 13:02:42] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-04-22 13:02:42] ./pilot3/pilot/util/realtimelogger.py
[2024-04-22 13:02:42] ./pilot3/pilot/util/loggingsupport.py
[2024-04-22 13:02:42] ./pilotlog.txt
12:23:35 (2266069): wrapper (7.7.26015): starting
12:23:35 (2266069): wrapper: running run_atlas (--nthreads 4)
[2024-04-23 12:23:35] Arguments: --nthreads 4
[2024-04-23 12:23:35] Threads: 4
[2024-04-23 12:23:35] This job has been restarted, cleaning up previous attempt
[2024-04-23 12:23:35] Checking for CVMFS
[2024-04-23 12:23:35] No cvmfs_config command found, will try listing directly
[2024-04-23 12:23:35] CVMFS is ok
[2024-04-23 12:23:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-23 12:23:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-23 12:23:35] Further information can be found at the LHC@home message board.
[2024-04-23 12:23:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-23 12:23:35] Checking for apptainer binary...
[2024-04-23 12:23:35] which: no apptainer in ((null))
[2024-04-23 12:23:35] apptainer is not installed, using version from CVMFS
[2024-04-23 12:23:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-23 12:23:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-04-23 12:23:36] apptainer works
[2024-04-23 12:23:36] Set ATHENA_PROC_NUMBER=4
[2024-04-23 12:23:36] Set ATHENA_CORE_NUMBER=4
[2024-04-23 12:23:36] Starting ATLAS job with PandaID=6180929259
[2024-04-23 12:23:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-23 12:29:07] Job failed
[2024-04-23 12:29:07] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2024-04-23 12:29:07] ++ pwd
[2024-04-23 12:29:07] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot88/slots/0/
[2024-04-23 12:29:07] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot88/slots/0/
[2024-04-23 12:29:07] + mv ATLAS.root_0 EVNT.38204341._000306.pool.root.1
[2024-04-23 12:29:07] mv: 'ATLAS.root_0' and 'EVNT.38204341._000306.pool.root.1' are the same file
[2024-04-23 12:29:07] + tar --strip-components=5 -xvf input.tar.gz
[2024-04-23 12:29:07] + umask 077
[2024-04-23 12:29:07] ++ date +%s
[2024-04-23 12:29:07] + ACCOUNTING_STARTTIME=1713867816
[2024-04-23 12:29:07] + echo 'Detecting resource accounting method available for the job.'
[2024-04-23 12:29:07] Detecting resource accounting method available for the job.
[2024-04-23 12:29:07] + JOB_ACCOUNTING=
[2024-04-23 12:29:07] + command -v arc-job-cgroup
[2024-04-23 12:29:07] + '[' -z '' ']'
[2024-04-23 12:29:07] + GNU_TIME=/usr/bin/time
[2024-04-23 12:29:07] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-04-23 12:29:07] Looking for /usr/bin/time tool for accounting measurements
[2024-04-23 12:29:07] + '[' '!' -z /usr/bin/time ']'
[2024-04-23 12:29:07] + /usr/bin/time --version
[2024-04-23 12:29:07] + echo 'GNU time found and will be used for job accounting.'
[2024-04-23 12:29:07] GNU time found and will be used for job accounting.
[2024-04-23 12:29:07] + JOB_ACCOUNTING=gnutime
[2024-04-23 12:29:07] + '[' -z gnutime ']'
[2024-04-23 12:29:07] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-04-23 12:29:07] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-04-23 12:29:07] + export GTAG=http://aipanda403.cern.ch/data/jobs/2024-04-19/BOINC_MCORE/6180929259.out
[2024-04-23 12:29:07] + GTAG=http://aipanda403.cern.ch/data/jobs/2024-04-19/BOINC_MCORE/6180929259.out
[2024-04-23 12:29:07] + export PILOT_NOKILL=YES
[2024-04-23 12:29:07] + PILOT_NOKILL=YES
[2024-04-23 12:29:07] + export GRID_GLOBAL_JOBID=Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-23 12:29:07] + GRID_GLOBAL_JOBID=Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-23 12:29:07] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-23 12:29:07] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-23 12:29:07] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-04-23 12:29:07] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-04-23 12:29:07] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-04-23 12:29:07] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-04-23 12:29:07] ++ pwd
[2024-04-23 12:29:07] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot88/slots/0
[2024-04-23 12:29:07] + RUNTIME_JOB_STDIN=/dev/null
[2024-04-23 12:29:07] ++ pwd
[2024-04-23 12:29:07] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot88/slots/0/log.38204343._007444.job.log.1
[2024-04-23 12:29:07] ++ pwd
[2024-04-23 12:29:07] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot88/slots/0/log.38204343._007444.job.log.1
[2024-04-23 12:29:07] ++ pwd
[2024-04-23 12:29:07] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot88/slots/0.diag
[2024-04-23 12:29:07] + '[' '!' -z '' ']'
[2024-04-23 12:29:07] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-04-23 12:29:07] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-04-23 12:29:07] + RUNTIME_FRONTEND_SEES_NODE=
[2024-04-23 12:29:07] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-04-23 12:29:07] + '[' '!' -z '' ']'
[2024-04-23 12:29:07] + '[' -z yes ']'
[2024-04-23 12:29:07] ++ pwd
[2024-04-23 12:29:07] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-23 12:29:07] + runtimeenvironments=
[2024-04-23 12:29:07] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-04-23 12:29:07] + RTE_function_0 1
[2024-04-23 12:29:07] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-23 12:29:07] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-23 12:29:07] + export BOINC_APP=ATLAS
[2024-04-23 12:29:07] + BOINC_APP=ATLAS
[2024-04-23 12:29:07] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-23 12:29:07] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-23 12:29:07] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-23 12:29:07] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-23 12:29:07] + '[' -z 1 ']'
[2024-04-23 12:29:07] + '[' 1 == 1 ']'
[2024-04-23 12:29:07] + shift
[2024-04-23 12:29:07] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-04-23 12:29:07] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-23 12:29:07] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-04-23 12:29:07] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot88/slots/0/
[2024-04-23 12:29:07] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot88/slots/0/
[2024-04-23 12:29:07] + '[' -e /scratch/boinc/var/slot88/slots/0/init_data.xml ']'
[2024-04-23 12:29:07] + grep '<use_http_proxy/>' /scratch/boinc/var/slot88/slots/0/init_data.xml
[2024-04-23 12:29:07] + '[' -e /scratch/boinc/var/slot88/slots/0/init_data.xml ']'
[2024-04-23 12:29:07] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot88/slots/0/init_data.xml
[2024-04-23 12:29:07] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-04-23 12:29:07] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-23 12:29:07] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-04-23 12:29:07] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-23 12:29:07] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-23 12:29:07] + '[' 0 -ne 0 ']'
[2024-04-23 12:29:07] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-04-23 12:29:07] + '[' -f /etc/os-release ']'
[2024-04-23 12:29:07] +++ cat /etc/os-release
[2024-04-23 12:29:07] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-04-23 12:29:07] +++ NAME='CentOS Linux'
[2024-04-23 12:29:07] +++ VERSION='7 (Core)'
[2024-04-23 12:29:07] +++ ID=centos
[2024-04-23 12:29:07] +++ ID_LIKE='rhel fedora'
[2024-04-23 12:29:07] +++ VERSION_ID=7
[2024-04-23 12:29:07] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-04-23 12:29:07] +++ ANSI_COLOR='0;31'
[2024-04-23 12:29:07] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-04-23 12:29:07] +++ HOME_URL=https://www.centos.org/
[2024-04-23 12:29:07] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-04-23 12:29:07] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-04-23 12:29:07] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-04-23 12:29:07] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-04-23 12:29:07] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-04-23 12:29:07] ++ echo 'CentOS Linux 7 (Core)'
[2024-04-23 12:29:07] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-04-23 12:29:07] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-04-23 12:29:07] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-04-23 12:29:07] + HOME=/scratch/boinc/var/slot88/slots/0
[2024-04-23 12:29:07] + export HOME
[2024-04-23 12:29:07] + cd /scratch/boinc/var/slot88/slots/0
[2024-04-23 12:29:07] + '[' '!' -z '' ']'
[2024-04-23 12:29:07] + '[' -z '' ']'
[2024-04-23 12:29:07] ++ /bin/hostname -f
[2024-04-23 12:29:07] + nodename=skurut14.grid.cesnet.cz
[2024-04-23 12:29:07] + echo nodename=skurut14.grid.cesnet.cz
[2024-04-23 12:29:07] + echo Processors=1
[2024-04-23 12:29:07] + echo Benchmark=HEPSPEC:1.0
[2024-04-23 12:29:07] + executable=./runpilot2-wrapper.sh
[2024-04-23 12:29:07] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-04-23 12:29:07] ++ tr -d '\0'
[2024-04-23 12:29:07] ++ head -n 1
[2024-04-23 12:29:07] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-04-23 12:29:07] + line1='#!/bin/bash'
[2024-04-23 12:29:07] ++ echo '#!/bin/bash'
[2024-04-23 12:29:07] ++ sed -n 's/^#! *//p'
[2024-04-23 12:29:07] + shebang=/bin/bash
[2024-04-23 12:29:07] ++ echo /bin/bash
[2024-04-23 12:29:07] ++ awk '{print $1}'
[2024-04-23 12:29:07] + interpreter=/bin/bash
[2024-04-23 12:29:07] + '[' /bin/bash = /usr/bin/env ']'
[2024-04-23 12:29:07] + '[' x/bin/bash = x ']'
[2024-04-23 12:29:07] + type /bin/bash
[2024-04-23 12:29:07] + '[' xgnutime = xgnutime ']'
[2024-04-23 12:29:07] + /usr/bin/time -o /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.2.4 -z -t --piloturl local --mute --container
[2024-04-23 12:29:07] + RESULT=2
[2024-04-23 12:29:07] + sed -i -e /nodename=/d /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-23 12:29:07] ++ grep domain_name init_data.xml
[2024-04-23 12:29:07] ++ awk -F '>' '{print $2}'
[2024-04-23 12:29:07] ++ awk -F '<' '{print $1}'
[2024-04-23 12:29:07] ++ sed -e 's# #_#g'
[2024-04-23 12:29:07] + hostname=skurut14.grid.cesnet.cz
[2024-04-23 12:29:07] ++ grep user_name init_data.xml
[2024-04-23 12:29:07] ++ awk -F '>' '{print $2}'
[2024-04-23 12:29:07] ++ awk -F '<' '{print $1}'
[2024-04-23 12:29:07] ++ sed -e 's# #_#g'
[2024-04-23 12:29:07] + username=praguelcg2
[2024-04-23 12:29:07] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2024-04-23 12:29:07] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2024-04-23 12:29:07] + '[' -n 4 ']'
[2024-04-23 12:29:07] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-23 12:29:07] + echo exitcode=2
[2024-04-23 12:29:07] + runtimeenvironments=
[2024-04-23 12:29:07] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-04-23 12:29:07] + RTE_function_0 2
[2024-04-23 12:29:07] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-23 12:29:07] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-23 12:29:07] + export BOINC_APP=ATLAS
[2024-04-23 12:29:07] + BOINC_APP=ATLAS
[2024-04-23 12:29:07] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-23 12:29:07] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-23 12:29:07] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-23 12:29:07] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-23 12:29:07] + '[' -z 2 ']'
[2024-04-23 12:29:07] + '[' 2 == 1 ']'
[2024-04-23 12:29:07] + '[' 0 -ne 0 ']'
[2024-04-23 12:29:07] + echo 'zip all output files'
[2024-04-23 12:29:07] + flist='*.diag '
[2024-04-23 12:29:07] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-23 12:29:07] + '[' -e ./heartbeat.json ']'
[2024-04-23 12:29:07] + flist='*.diag ./heartbeat.json'
[2024-04-23 12:29:07] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-23 12:29:07] + '[' -e ./output.list ']'
[2024-04-23 12:29:07] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-23 12:29:07] + '[' -e ./log.38204343._007444.job.log.1 ']'
[2024-04-23 12:29:07] + flist='*.diag ./heartbeat.json ./log.38204343._007444.job.log.1'
[2024-04-23 12:29:07] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-23 12:29:07] + '[' -e ./log.38204343._007444.job.log.1 ']'
[2024-04-23 12:29:07] + flist='*.diag ./heartbeat.json ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1'
[2024-04-23 12:29:07] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-23 12:29:07] + '[' -e ./gmlog/ ']'
[2024-04-23 12:29:07] + '[' -f output.list ']'
[2024-04-23 12:29:07] + tar cvf result.tar.gz Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag ./heartbeat.json ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1
[2024-04-23 12:29:07] + '[' xgnutime = xcgroup ']'
[2024-04-23 12:29:07] + '[' -n '' ']'
[2024-04-23 12:29:07] + '[' -n '' ']'
[2024-04-23 12:29:07] ++ date +%s
[2024-04-23 12:29:07] + ACCOUNTING_ENDTIME=1713868009
[2024-04-23 12:29:07] ++ date -d '1970-01-01 UTC 1713867816 seconds' +%Y%m%d%H%M%SZ
[2024-04-23 12:29:07] + echo LRMSStartTime=20240423122336Z
[2024-04-23 12:29:07] ++ date -d '1970-01-01 UTC 1713868009 seconds' +%Y%m%d%H%M%SZ
[2024-04-23 12:29:07] + echo LRMSEndTime=20240423122649Z
[2024-04-23 12:29:07] + echo walltime=193
[2024-04-23 12:29:07] + echo exitcode=2
[2024-04-23 12:29:07] + exit 2
[2024-04-23 12:29:07] ./runtime_log
[2024-04-23 12:29:07] ./PanDA_Pilot-6180929259/log.EVNTtoHITS
[2024-04-23 12:29:07] ./PanDA_Pilot-6180929259/prmon.log
[2024-04-23 12:29:07] ./PanDA_Pilot-6180929259/PoolFileCatalog.xml
[2024-04-23 12:29:07] ./PanDA_Pilot-6180929259/pilotlog.txt
[2024-04-23 12:29:07] ./runtime_log.err
[2024-04-23 12:29:07] ./log.38204343._007444.job.log.1
[2024-04-23 12:29:07] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-04-23 12:29:07] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-04-23 12:29:07] ./pilot3/pilot/util/realtimelogger.py
[2024-04-23 12:29:07] ./pilot3/pilot/util/loggingsupport.py
[2024-04-23 12:29:07] ./pilotlog.txt
22:18:27 (3289061): wrapper (7.7.26015): starting
22:18:27 (3289061): wrapper: running run_atlas (--nthreads 4)
[2024-04-24 22:18:27] Arguments: --nthreads 4
[2024-04-24 22:18:27] Threads: 4
[2024-04-24 22:18:27] This job has been restarted, cleaning up previous attempt
[2024-04-24 22:18:27] Checking for CVMFS
[2024-04-24 22:18:27] No cvmfs_config command found, will try listing directly
[2024-04-24 22:18:27] CVMFS is ok
[2024-04-24 22:18:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-24 22:18:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-24 22:18:27] Further information can be found at the LHC@home message board.
[2024-04-24 22:18:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-24 22:18:27] Checking for apptainer binary...
[2024-04-24 22:18:27] which: no apptainer in ((null))
[2024-04-24 22:18:27] apptainer is not installed, using version from CVMFS
[2024-04-24 22:18:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-24 22:18:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2024-04-24 22:18:28] apptainer works
[2024-04-24 22:18:28] Set ATHENA_PROC_NUMBER=4
[2024-04-24 22:18:28] Set ATHENA_CORE_NUMBER=4
[2024-04-24 22:18:28] Starting ATLAS job with PandaID=6180929259
[2024-04-24 22:18:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-24 22:21:36] Job failed
[2024-04-24 22:21:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2024-04-24 22:21:36] ++ pwd
[2024-04-24 22:21:36] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot88/slots/0/
[2024-04-24 22:21:36] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot88/slots/0/
[2024-04-24 22:21:36] + mv ATLAS.root_0 EVNT.38204341._000306.pool.root.1
[2024-04-24 22:21:36] mv: 'ATLAS.root_0' and 'EVNT.38204341._000306.pool.root.1' are the same file
[2024-04-24 22:21:36] + tar --strip-components=5 -xvf input.tar.gz
[2024-04-24 22:21:36] + umask 077
[2024-04-24 22:21:36] ++ date +%s
[2024-04-24 22:21:36] + ACCOUNTING_STARTTIME=1713989908
[2024-04-24 22:21:36] + echo 'Detecting resource accounting method available for the job.'
[2024-04-24 22:21:36] Detecting resource accounting method available for the job.
[2024-04-24 22:21:36] + JOB_ACCOUNTING=
[2024-04-24 22:21:36] + command -v arc-job-cgroup
[2024-04-24 22:21:36] + '[' -z '' ']'
[2024-04-24 22:21:36] + GNU_TIME=/usr/bin/time
[2024-04-24 22:21:36] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2024-04-24 22:21:36] Looking for /usr/bin/time tool for accounting measurements
[2024-04-24 22:21:36] + '[' '!' -z /usr/bin/time ']'
[2024-04-24 22:21:36] + /usr/bin/time --version
[2024-04-24 22:21:36] + echo 'GNU time found and will be used for job accounting.'
[2024-04-24 22:21:36] GNU time found and will be used for job accounting.
[2024-04-24 22:21:36] + JOB_ACCOUNTING=gnutime
[2024-04-24 22:21:36] + '[' -z gnutime ']'
[2024-04-24 22:21:36] + export PANDA_JSID=harvester-CERN_central_ACTA
[2024-04-24 22:21:36] + PANDA_JSID=harvester-CERN_central_ACTA
[2024-04-24 22:21:36] + export GTAG=http://aipanda403.cern.ch/data/jobs/2024-04-19/BOINC_MCORE/6180929259.out
[2024-04-24 22:21:36] + GTAG=http://aipanda403.cern.ch/data/jobs/2024-04-19/BOINC_MCORE/6180929259.out
[2024-04-24 22:21:36] + export PILOT_NOKILL=YES
[2024-04-24 22:21:36] + PILOT_NOKILL=YES
[2024-04-24 22:21:36] + export GRID_GLOBAL_JOBID=Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-24 22:21:36] + GRID_GLOBAL_JOBID=Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-24 22:21:36] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-24 22:21:36] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn
[2024-04-24 22:21:36] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-04-24 22:21:36] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2024-04-24 22:21:36] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-04-24 22:21:36] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2024-04-24 22:21:36] ++ pwd
[2024-04-24 22:21:36] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot88/slots/0
[2024-04-24 22:21:36] + RUNTIME_JOB_STDIN=/dev/null
[2024-04-24 22:21:36] ++ pwd
[2024-04-24 22:21:36] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot88/slots/0/log.38204343._007444.job.log.1
[2024-04-24 22:21:36] ++ pwd
[2024-04-24 22:21:36] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot88/slots/0/log.38204343._007444.job.log.1
[2024-04-24 22:21:36] ++ pwd
[2024-04-24 22:21:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot88/slots/0.diag
[2024-04-24 22:21:36] + '[' '!' -z '' ']'
[2024-04-24 22:21:36] + RUNTIME_LOCAL_SCRATCH_DIR=
[2024-04-24 22:21:36] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2024-04-24 22:21:36] + RUNTIME_FRONTEND_SEES_NODE=
[2024-04-24 22:21:36] + RUNTIME_NODE_SEES_FRONTEND=yes
[2024-04-24 22:21:36] + '[' '!' -z '' ']'
[2024-04-24 22:21:36] + '[' -z yes ']'
[2024-04-24 22:21:36] ++ pwd
[2024-04-24 22:21:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-24 22:21:36] + runtimeenvironments=
[2024-04-24 22:21:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-04-24 22:21:36] + RTE_function_0 1
[2024-04-24 22:21:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-24 22:21:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-24 22:21:36] + export BOINC_APP=ATLAS
[2024-04-24 22:21:36] + BOINC_APP=ATLAS
[2024-04-24 22:21:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-24 22:21:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-24 22:21:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-24 22:21:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-24 22:21:36] + '[' -z 1 ']'
[2024-04-24 22:21:36] + '[' 1 == 1 ']'
[2024-04-24 22:21:36] + shift
[2024-04-24 22:21:36] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)'
[2024-04-24 22:21:36] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-24 22:21:36] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)'
[2024-04-24 22:21:36] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot88/slots/0/
[2024-04-24 22:21:36] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot88/slots/0/
[2024-04-24 22:21:36] + '[' -e /scratch/boinc/var/slot88/slots/0/init_data.xml ']'
[2024-04-24 22:21:36] + grep '<use_http_proxy/>' /scratch/boinc/var/slot88/slots/0/init_data.xml
[2024-04-24 22:21:36] + '[' -e /scratch/boinc/var/slot88/slots/0/init_data.xml ']'
[2024-04-24 22:21:36] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot88/slots/0/init_data.xml
[2024-04-24 22:21:36] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)'
[2024-04-24 22:21:36] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-24 22:21:36] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"'
[2024-04-24 22:21:36] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-24 22:21:36] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)'
[2024-04-24 22:21:36] + '[' 0 -ne 0 ']'
[2024-04-24 22:21:36] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2024-04-24 22:21:36] + '[' -f /etc/os-release ']'
[2024-04-24 22:21:36] +++ cat /etc/os-release
[2024-04-24 22:21:36] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2024-04-24 22:21:36] +++ NAME='CentOS Linux'
[2024-04-24 22:21:36] +++ VERSION='7 (Core)'
[2024-04-24 22:21:36] +++ ID=centos
[2024-04-24 22:21:36] +++ ID_LIKE='rhel fedora'
[2024-04-24 22:21:36] +++ VERSION_ID=7
[2024-04-24 22:21:36] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2024-04-24 22:21:36] +++ ANSI_COLOR='0;31'
[2024-04-24 22:21:36] +++ CPE_NAME=cpe:/o:centos:centos:7
[2024-04-24 22:21:36] +++ HOME_URL=https://www.centos.org/
[2024-04-24 22:21:36] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2024-04-24 22:21:36] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2024-04-24 22:21:36] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2024-04-24 22:21:36] +++ REDHAT_SUPPORT_PRODUCT=centos
[2024-04-24 22:21:36] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2024-04-24 22:21:36] ++ echo 'CentOS Linux 7 (Core)'
[2024-04-24 22:21:36] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2024-04-24 22:21:36] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2024-04-24 22:21:36] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2024-04-24 22:21:36] + HOME=/scratch/boinc/var/slot88/slots/0
[2024-04-24 22:21:36] + export HOME
[2024-04-24 22:21:36] + cd /scratch/boinc/var/slot88/slots/0
[2024-04-24 22:21:36] + '[' '!' -z '' ']'
[2024-04-24 22:21:36] + '[' -z '' ']'
[2024-04-24 22:21:36] ++ /bin/hostname -f
[2024-04-24 22:21:36] + nodename=skurut14.grid.cesnet.cz
[2024-04-24 22:21:36] + echo nodename=skurut14.grid.cesnet.cz
[2024-04-24 22:21:36] + echo Processors=1
[2024-04-24 22:21:36] + echo Benchmark=HEPSPEC:1.0
[2024-04-24 22:21:36] + executable=./runpilot2-wrapper.sh
[2024-04-24 22:21:36] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2024-04-24 22:21:36] ++ dd if=./runpilot2-wrapper.sh count=1
[2024-04-24 22:21:36] ++ head -n 1
[2024-04-24 22:21:36] ++ tr -d '\0'
[2024-04-24 22:21:36] + line1='#!/bin/bash'
[2024-04-24 22:21:36] ++ echo '#!/bin/bash'
[2024-04-24 22:21:36] ++ sed -n 's/^#! *//p'
[2024-04-24 22:21:36] + shebang=/bin/bash
[2024-04-24 22:21:36] ++ echo /bin/bash
[2024-04-24 22:21:36] ++ awk '{print $1}'
[2024-04-24 22:21:36] + interpreter=/bin/bash
[2024-04-24 22:21:36] + '[' /bin/bash = /usr/bin/env ']'
[2024-04-24 22:21:36] + '[' x/bin/bash = x ']'
[2024-04-24 22:21:36] + type /bin/bash
[2024-04-24 22:21:36] + '[' xgnutime = xgnutime ']'
[2024-04-24 22:21:36] + /usr/bin/time -o /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.2.4 -z -t --piloturl local --mute --container
[2024-04-24 22:21:36] + RESULT=2
[2024-04-24 22:21:36] + sed -i -e /nodename=/d /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-24 22:21:36] ++ grep domain_name init_data.xml
[2024-04-24 22:21:36] ++ awk -F '>' '{print $2}'
[2024-04-24 22:21:36] ++ awk -F '<' '{print $1}'
[2024-04-24 22:21:36] ++ sed -e 's# #_#g'
[2024-04-24 22:21:36] + hostname=skurut14.grid.cesnet.cz
[2024-04-24 22:21:36] ++ grep user_name init_data.xml
[2024-04-24 22:21:36] ++ awk -F '>' '{print $2}'
[2024-04-24 22:21:36] ++ awk -F '<' '{print $1}'
[2024-04-24 22:21:36] ++ sed -e 's# #_#g'
[2024-04-24 22:21:36] + username=praguelcg2
[2024-04-24 22:21:36] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2024-04-24 22:21:36] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2024-04-24 22:21:36] + '[' -n 4 ']'
[2024-04-24 22:21:36] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot88/slots/0/Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag
[2024-04-24 22:21:36] + echo exitcode=2
[2024-04-24 22:21:36] + runtimeenvironments=
[2024-04-24 22:21:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2024-04-24 22:21:36] + RTE_function_0 2
[2024-04-24 22:21:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-24 22:21:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2024-04-24 22:21:36] + export BOINC_APP=ATLAS
[2024-04-24 22:21:36] + BOINC_APP=ATLAS
[2024-04-24 22:21:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-24 22:21:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2024-04-24 22:21:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-24 22:21:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2024-04-24 22:21:36] + '[' -z 2 ']'
[2024-04-24 22:21:36] + '[' 2 == 1 ']'
[2024-04-24 22:21:36] + '[' 0 -ne 0 ']'
[2024-04-24 22:21:36] + echo 'zip all output files'
[2024-04-24 22:21:36] + flist='*.diag '
[2024-04-24 22:21:36] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-24 22:21:36] + '[' -e ./heartbeat.json ']'
[2024-04-24 22:21:36] + flist='*.diag ./heartbeat.json'
[2024-04-24 22:21:36] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-24 22:21:36] + '[' -e ./output.list ']'
[2024-04-24 22:21:36] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-24 22:21:36] + '[' -e ./log.38204343._007444.job.log.1 ']'
[2024-04-24 22:21:36] + flist='*.diag ./heartbeat.json ./log.38204343._007444.job.log.1'
[2024-04-24 22:21:36] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-24 22:21:36] + '[' -e ./log.38204343._007444.job.log.1 ']'
[2024-04-24 22:21:36] + flist='*.diag ./heartbeat.json ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1'
[2024-04-24 22:21:36] + for f in ./heartbeat.json ./output.list ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1 ./gmlog/
[2024-04-24 22:21:36] + '[' -e ./gmlog/ ']'
[2024-04-24 22:21:36] + '[' -f output.list ']'
[2024-04-24 22:21:36] + tar cvf result.tar.gz Vn5KDmif6H5nsSi4apGgGQJmABFKDmABFKDmRLXKDmKpJKDmRzbnFn.diag ./heartbeat.json ./log.38204343._007444.job.log.1 ./log.38204343._007444.job.log.1
[2024-04-24 22:21:36] + '[' xgnutime = xcgroup ']'
[2024-04-24 22:21:36] + '[' -n '' ']'
[2024-04-24 22:21:36] + '[' -n '' ']'
[2024-04-24 22:21:36] ++ date +%s
[2024-04-24 22:21:36] + ACCOUNTING_ENDTIME=1713990096
[2024-04-24 22:21:36] ++ date -d '1970-01-01 UTC 1713989908 seconds' +%Y%m%d%H%M%SZ
[2024-04-24 22:21:36] + echo LRMSStartTime=20240424221828Z
[2024-04-24 22:21:36] ++ date -d '1970-01-01 UTC 1713990096 seconds' +%Y%m%d%H%M%SZ
[2024-04-24 22:21:36] + echo LRMSEndTime=20240424222136Z
[2024-04-24 22:21:36] + echo walltime=188
[2024-04-24 22:21:36] + echo exitcode=2
[2024-04-24 22:21:36] + exit 2
[2024-04-24 22:21:36] ./runtime_log
[2024-04-24 22:21:36] ./PanDA_Pilot-6180929259/log.EVNTtoHITS
[2024-04-24 22:21:36] ./PanDA_Pilot-6180929259/prmon.log
[2024-04-24 22:21:36] ./PanDA_Pilot-6180929259/PoolFileCatalog.xml
[2024-04-24 22:21:36] ./PanDA_Pilot-6180929259/pilotlog.txt
[2024-04-24 22:21:36] ./runtime_log.err
[2024-04-24 22:21:36] ./log.38204343._007444.job.log.1
[2024-04-24 22:21:36] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2024-04-24 22:21:36] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2024-04-24 22:21:36] ./pilot3/pilot/util/realtimelogger.py
[2024-04-24 22:21:36] ./pilot3/pilot/util/loggingsupport.py
[2024-04-24 22:21:36] ./pilotlog.txt
22:31:37 (3289061): run_atlas exited; CPU time 13.358996
22:31:37 (3289061): app exit status: 0x1
22:31:37 (3289061): called boinc_finish(195)
</stderr_txt>
]]>
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