| Name | 2R0KDmmmiH5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmCxGKDmqwjKfn_0 |
| Workunit | 222197698 |
| Created | 18 Apr 2024, 15:23:32 UTC |
| Sent | 18 Apr 2024, 18:48:04 UTC |
| Report deadline | 26 Apr 2024, 18:48:04 UTC |
| Received | 18 Apr 2024, 23:03:37 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10686811 |
| Run time | 4 hours 12 min 11 sec |
| CPU time | 11 hours 51 min 20 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 31.28 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.54 GB |
| Peak swap size | 31.65 GB |
| Peak disk usage | 1.15 GB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:48:50 (84348): wrapper (7.7.26015): starting
14:48:50 (84348): wrapper: running run_atlas (--nthreads 8)
[2024-04-18 14:48:50] Arguments: --nthreads 8
[2024-04-18 14:48:50] Threads: 8
[2024-04-18 14:48:50] Checking for CVMFS
[2024-04-18 14:48:50] Probing /cvmfs/atlas.cern.ch... OK
[2024-04-18 14:48:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-04-18 14:48:51] Running cvmfs_config stat atlas.cern.ch
[2024-04-18 14:48:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-04-18 14:48:51] 2.11.2.0 67155 57 143100 131765 3 861 13872414 18432001 21129 130560 0 2231154 97.575 15719324 37172 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-04-18 14:48:51] CVMFS is ok
[2024-04-18 14:48:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-04-18 14:48:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-04-18 14:48:51] Further information can be found at the LHC@home message board.
[2024-04-18 14:48:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-04-18 14:48:51] Checking for apptainer binary...
[2024-04-18 14:48:51] Using apptainer found in PATH at /usr/bin/apptainer
[2024-04-18 14:48:51] Running /usr/bin/apptainer --version
[2024-04-18 14:48:51] apptainer version 1.3.0-1.el7
[2024-04-18 14:48:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-04-18 14:48:56] c6-8-25-2.aglt2.org
[2024-04-18 14:48:56] apptainer works
[2024-04-18 14:48:56] Set ATHENA_PROC_NUMBER=8
[2024-04-18 14:48:56] Set ATHENA_CORE_NUMBER=8
[2024-04-18 14:48:56] Starting ATLAS job with PandaID=6180783601
[2024-04-18 14:48:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-04-18 19:00:59] *** The last 200 lines of the pilot log: ***
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-04-18 19:00:59] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/processes.py", line 571, in get_current_cpu_consumption_time
[2024-04-18 19:00:59] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-18 19:00:59] process = subprocess.Popen(exe,
[2024-04-18 19:00:59] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-18 19:00:59] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-18 19:00:59] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-18 19:00:59] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-18 19:00:59] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-18 19:00:59]
[2024-04-18 19:00:59] 2024-04-18 22:58:17,397 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-18 19:00:59] 2024-04-18 22:58:17,397 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-04-18 19:00:59] 2024-04-18 22:58:17,397 | INFO | job 6180783601 has state 'running' - writing heartbeat
[2024-04-18 19:00:59] 2024-04-18 22:58:17,397 | INFO | payload/TRF did not report the number of read events
[2024-04-18 19:00:59] 2024-04-18 22:58:17,401 | INFO | executing command: lscpu
[2024-04-18 19:00:59] 2024-04-18 22:58:17,409 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-18 19:00:59] 2024-04-18 22:58:19,912 | INFO | monitor loop #977: job 0:6180783601 is in state 'failed'
[2024-04-18 19:00:59] 2024-04-18 22:58:19,912 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-18 19:00:59] 2024-04-18 22:58:22,415 | INFO | monitor loop #978: job 0:6180783601 is in state 'failed'
[2024-04-18 19:00:59] 2024-04-18 22:58:22,415 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-04-18 19:00:59] 2024-04-18 22:58:23,924 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-04-18 19:00:59] 2024-04-18 22:58:23,924 | INFO | aborting loop
[2024-04-18 19:00:59] 2024-04-18 22:58:23,924 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-04-18 19:00:59] 2024-04-18 22:58:23,925 | INFO | found 1 job(s) in 20 queues
[2024-04-18 19:00:59] 2024-04-18 22:58:23,925 | INFO | aborting job 6180783601
[2024-04-18 19:00:59] 2024-04-18 22:58:24,019 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-04-18 19:00:59] 2024-04-18 22:58:24,019 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-04-18 19:00:59] 2024-04-18 22:58:24,279 | INFO | all data control threads have been joined
[2024-04-18 19:00:59] 2024-04-18 22:58:24,297 | WARNING | job:queue_monitor:received graceful stop - abort after this iteration
[2024-04-18 19:00:59] 2024-04-18 22:58:24,297 | WARNING | since job:queue_monitor is responsible for sending job updates, we sleep for 20 s
[2024-04-18 19:00:59] 2024-04-18 22:58:24,483 | INFO | all payload control threads have been joined
[2024-04-18 19:00:59] 2024-04-18 22:58:24,804 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-04-18 19:00:59] 2024-04-18 22:58:24,929 | INFO | [job] job monitor thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,075 | INFO | [payload] validate_post thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,284 | INFO | [data] control thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,381 | INFO | [job] create_data_payload thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,453 | INFO | [data] copytool_in thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,488 | INFO | [payload] control thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,541 | INFO | all job control threads have been joined
[2024-04-18 19:00:59] 2024-04-18 22:58:25,676 | INFO | [payload] run_realtimelog thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,871 | INFO | [job] validate thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,875 | INFO | [payload] validate_pre thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:25,995 | INFO | [job] retrieve thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:26,086 | INFO | [payload] failed_post thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:26,546 | INFO | [job] control thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:28,812 | INFO | [data] queue_monitor thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:29,852 | INFO | [payload] execute_payloads thread has finished
[2024-04-18 19:00:59] 2024-04-18 22:58:45,398 | INFO | job 6180783601 has state=failed
[2024-04-18 19:00:59] 2024-04-18 22:58:45,398 | INFO | preparing for final server update for job 6180783601 in state='failed'
[2024-04-18 19:00:59] 2024-04-18 22:58:46,128 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-04-18 19:00:59] 2024-04-18 22:58:46,128 | INFO | [monitor] control thread has ended
[2024-04-18 19:00:59] 2024-04-18 22:58:46,191 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:58:48,201 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:58:50,211 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:58:52,221 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:58:54,231 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:58:56,241 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:58:58,251 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:00,261 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:02,272 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:04,282 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:06,294 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:08,305 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:10,316 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:12,326 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:14,335 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:16,346 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:18,356 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:20,367 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:22,379 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:24,389 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:26,399 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:28,409 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:30,419 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:32,431 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:34,441 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:36,451 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:38,461 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:40,471 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:42,481 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:44,491 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:46,504 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:48,510 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:50,520 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:52,530 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:54,541 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:56,552 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 22:59:58,562 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:00,572 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:02,582 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:04,593 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:06,604 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:08,614 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:10,624 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:12,634 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:14,645 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:16,656 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:18,666 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:20,678 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:22,691 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:24,702 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:26,712 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:28,722 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:30,733 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:32,743 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:34,755 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:36,767 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:38,777 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:40,787 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:40,896 | INFO | proceeding with final server update
[2024-04-18 19:00:59] 2024-04-18 23:00:40,896 | INFO | this job has now completed (state=failed)
[2024-04-18 19:00:59] 2024-04-18 23:00:40,896 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-04-18 19:00:59] 2024-04-18 23:00:40,897 | INFO | job 6180783601 has failed - writing final server update
[2024-04-18 19:00:59] 2024-04-18 23:00:40,897 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2024-04-18 19:00:59] 2024-04-18 23:00:40,897 | INFO | payload/TRF did not report the number of read events
[2024-04-18 19:00:59] 2024-04-18 23:00:40,900 | INFO | executing command: lscpu
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-18 19:00:59] self.target(**self.kwargs)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-18 19:00:59] update_server(job, args)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-18 19:00:59] send_state(job, args, job.state, metadata=metadata)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-18 19:00:59] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-18 19:00:59] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-18 19:00:59] ec, stdout = lscpu()
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-18 19:00:59] ec, stdout, _ = execute(cmd)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-18 19:00:59] process = subprocess.Popen(exe,
[2024-04-18 19:00:59] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-18 19:00:59] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-18 19:00:59] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-18 19:00:59] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-18 19:00:59] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7f00470f9200>)
[2024-04-18 19:00:59] Traceback (most recent call last):
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/common/exception.py", line 450, in run
[2024-04-18 19:00:59] self.target(**self.kwargs)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2529, in queue_monitor
[2024-04-18 19:00:59] update_server(job, args)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 2578, in update_server
[2024-04-18 19:00:59] send_state(job, args, job.state, metadata=metadata)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 420, in send_state
[2024-04-18 19:00:59] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/control/job.py", line 744, in get_data_structure
[2024-04-18 19:00:59] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-04-18 19:00:59] ec, stdout = lscpu()
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-04-18 19:00:59] ec, stdout, _ = execute(cmd)
[2024-04-18 19:00:59] File "/tmp/boinchome/slots/2/pilot3/pilot/util/container.py", line 94, in execute
[2024-04-18 19:00:59] process = subprocess.Popen(exe,
[2024-04-18 19:00:59] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-04-18 19:00:59] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-04-18 19:00:59] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-04-18 19:00:59] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-04-18 19:00:59] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-04-18 19:00:59]
[2024-04-18 19:00:59] None
[2024-04-18 19:00:59] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-04-18 19:00:59] setting graceful stop in 10 s since there is no point in continuing
[2024-04-18 19:00:59] 2024-04-18 23:00:42,797 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:44,807 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:46,818 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:48,829 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:50,839 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 139639315662656)>', '<ExcThread(queue_monitor, started 139638379378432)>']
[2024-04-18 19:00:59] 2024-04-18 23:00:52,849 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 139639315662656)>'])
[2024-04-18 19:00:59] 2024-04-18 23:00:57,875 | INFO | all workflow threads have been joined
[2024-04-18 19:00:59] 2024-04-18 23:00:57,875 | INFO | end of generic workflow (traces error code: 0)
[2024-04-18 19:00:59] 2024-04-18 23:00:57,876 | INFO | traces error code: 0
[2024-04-18 19:00:59] 2024-04-18 23:00:57,876 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] ==== pilot stdout END ====
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] ==== wrapper stdout RESUME ====
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] pilotpid: 117802
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] Pilot exit status: 139
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] pandaids:
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] No supervise_pilot CHILD process found
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] Test setup, not cleaning
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] ==== wrapper stdout END ====
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] ==== wrapper stderr END ====
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-04-18 19:00:59] apfmon messages muted
[2024-04-18 19:00:59] *** Error codes and diagnostics ***
[2024-04-18 19:00:59] *** Listing of results directory ***
[2024-04-18 19:00:59] total 511860
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 462745 Apr 18 11:19 pilot3.tar.gz
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 6185 Apr 18 11:21 queuedata.json
[2024-04-18 19:00:59] -rwx------ 1 boincer umatlas 32211 Apr 18 11:23 runpilot2-wrapper.sh
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 100 Apr 18 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2024-04-18 19:00:59] -rwxr-xr-x 1 boincer umatlas 7986 Apr 18 14:48 run_atlas
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 105 Apr 18 14:48 job.xml
[2024-04-18 19:00:59] -rw-r--r-- 2 boincer umatlas 518274887 Apr 18 14:48 EVNT.38204325._000011.pool.root.1
[2024-04-18 19:00:59] drwxrwx--x 2 boincer umatlas 4096 Apr 18 14:48 shared
[2024-04-18 19:00:59] -rw-r--r-- 2 boincer umatlas 474773 Apr 18 14:48 input.tar.gz
[2024-04-18 19:00:59] -rw-r--r-- 2 boincer umatlas 17537 Apr 18 14:48 start_atlas.sh
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 0 Apr 18 14:48 boinc_lockfile
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 2633 Apr 18 14:48 pandaJob.out
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 467 Apr 18 14:48 setup.sh.local
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 989960 Apr 18 14:49 agis_schedconf.cvmfs.json
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 0 Apr 18 14:49 agis_ddmendpoints.agis.ALL.json
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 1319980 Apr 18 14:49 cric_ddmendpoints.json
[2024-04-18 19:00:59] drwx------ 4 boincer umatlas 4096 Apr 18 14:49 pilot3
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 909 Apr 18 18:26 heartbeat.json
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 6384 Apr 18 18:57 init_data.xml
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 95 Apr 18 18:57 pilot_heartbeat.json
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 1070 Apr 18 18:58 memory_monitor_summary.json
[2024-04-18 19:00:59] drwxrwx--- 2 boincer umatlas 4096 Apr 18 18:58 PanDA_Pilot-6180783601
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 532 Apr 18 18:58 boinc_task_state.xml
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 28 Apr 18 19:00 wrapper_checkpoint.txt
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 8192 Apr 18 19:00 boinc_mmap_file
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 1198039 Apr 18 19:00 pilotlog.txt
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 1220249 Apr 18 19:00 log.38204327._000268.job.log.1
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 428 Apr 18 19:00 runtime_log
[2024-04-18 19:00:59] -rw------- 1 boincer umatlas 631 Apr 18 19:00 2R0KDmmmiH5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmCxGKDmqwjKfn.diag
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 11692 Apr 18 19:00 runtime_log.err
[2024-04-18 19:00:59] -rw-r--r-- 1 boincer umatlas 28381 Apr 18 19:00 stderr.txt
[2024-04-18 19:00:59] No HITS result produced
[2024-04-18 19:00:59] *** Contents of shared directory: ***
[2024-04-18 19:00:59] total 506616
[2024-04-18 19:00:59] -rw-r--r-- 2 boincer umatlas 518274887 Apr 18 14:48 ATLAS.root_0
[2024-04-18 19:00:59] -rw-r--r-- 2 boincer umatlas 474773 Apr 18 14:48 input.tar.gz
[2024-04-18 19:00:59] -rw-r--r-- 2 boincer umatlas 17537 Apr 18 14:48 start_atlas.sh
19:01:00 (84348): run_atlas exited; CPU time 42591.195959
19:01:00 (84348): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>2R0KDmmmiH5nfZGDcpSWOuwoABFKDmABFKDmtxRSDmCxGKDmqwjKfn_0_r921964523_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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