Name | tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m_1 |
Workunit | 221650937 |
Created | 14 Apr 2024, 10:00:27 UTC |
Sent | 14 Apr 2024, 12:54:00 UTC |
Report deadline | 22 Apr 2024, 12:54:00 UTC |
Received | 19 Apr 2024, 3:46:35 UTC |
Server state | Over |
Outcome | Computation error |
Client state | Compute error |
Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
Computer ID | 10690640 |
Run time | 1 hours 58 min 22 sec |
CPU time | 6 hours 18 min 53 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 13.98 GFLOPS |
Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 2.37 GB |
Peak swap size | 2.91 GB |
Peak disk usage | 1.48 GB |
<core_client_version>7.20.2</core_client_version> <![CDATA[ <message> process exited with code 195 (0xc3, -61)</message> <stderr_txt> 03:42:01 (1342330): wrapper (7.7.26015): starting 03:42:01 (1342330): wrapper: running run_atlas (--nthreads 4) [2024-04-16 03:42:01] Arguments: --nthreads 4 [2024-04-16 03:42:01] Threads: 4 [2024-04-16 03:42:01] Checking for CVMFS [2024-04-16 03:42:01] No cvmfs_config command found, will try listing directly [2024-04-16 03:42:01] CVMFS is ok [2024-04-16 03:42:01] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-04-16 03:42:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-04-16 03:42:01] Further information can be found at the LHC@home message board. [2024-04-16 03:42:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-04-16 03:42:01] Checking for apptainer binary... [2024-04-16 03:42:01] which: no apptainer in ((null)) [2024-04-16 03:42:01] apptainer is not installed, using version from CVMFS [2024-04-16 03:42:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-04-16 03:42:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz [2024-04-16 03:42:02] apptainer works [2024-04-16 03:42:02] Set ATHENA_PROC_NUMBER=4 [2024-04-16 03:42:02] Set ATHENA_CORE_NUMBER=4 [2024-04-16 03:42:02] Starting ATLAS job with PandaID=6175544537 [2024-04-16 03:42:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh 10:02:15 (1986142): wrapper (7.7.26015): starting 10:02:15 (1986142): wrapper: running run_atlas (--nthreads 4) [2024-04-16 10:02:15] Arguments: --nthreads 4 [2024-04-16 10:02:15] Threads: 4 [2024-04-16 10:02:15] This job has been restarted, cleaning up previous attempt [2024-04-16 10:02:15] Checking for CVMFS [2024-04-16 10:02:15] No cvmfs_config command found, will try listing directly [2024-04-16 10:02:15] CVMFS is ok [2024-04-16 10:02:15] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-04-16 10:02:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-04-16 10:02:15] Further information can be found at the LHC@home message board. [2024-04-16 10:02:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-04-16 10:02:15] Checking for apptainer binary... [2024-04-16 10:02:15] which: no apptainer in ((null)) [2024-04-16 10:02:15] apptainer is not installed, using version from CVMFS [2024-04-16 10:02:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-04-16 10:02:16] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz [2024-04-16 10:02:16] apptainer works [2024-04-16 10:02:16] Set ATHENA_PROC_NUMBER=4 [2024-04-16 10:02:16] Set ATHENA_CORE_NUMBER=4 [2024-04-16 10:02:16] Starting ATLAS job with PandaID=6175544537 [2024-04-16 10:02:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-04-16 10:05:24] Job failed [2024-04-16 10:05:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment [2024-04-16 10:05:24] ++ pwd [2024-04-16 10:05:24] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/ [2024-04-16 10:05:24] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/ [2024-04-16 10:05:24] + mv ATLAS.root_0 EVNT.38106735._000020.pool.root.1 [2024-04-16 10:05:24] mv: 'ATLAS.root_0' and 'EVNT.38106735._000020.pool.root.1' are the same file [2024-04-16 10:05:24] + tar --strip-components=5 -xvf input.tar.gz [2024-04-16 10:05:24] + umask 077 [2024-04-16 10:05:24] ++ date +%s [2024-04-16 10:05:24] + ACCOUNTING_STARTTIME=1713254537 [2024-04-16 10:05:24] + echo 'Detecting resource accounting method available for the job.' [2024-04-16 10:05:24] Detecting resource accounting method available for the job. [2024-04-16 10:05:24] + JOB_ACCOUNTING= [2024-04-16 10:05:24] + command -v arc-job-cgroup [2024-04-16 10:05:24] + '[' -z '' ']' [2024-04-16 10:05:24] + GNU_TIME=/usr/bin/time [2024-04-16 10:05:24] + echo 'Looking for /usr/bin/time tool for accounting measurements' [2024-04-16 10:05:24] Looking for /usr/bin/time tool for accounting measurements [2024-04-16 10:05:24] + '[' '!' -z /usr/bin/time ']' [2024-04-16 10:05:24] + /usr/bin/time --version [2024-04-16 10:05:24] + echo 'GNU time found and will be used for job accounting.' [2024-04-16 10:05:24] GNU time found and will be used for job accounting. [2024-04-16 10:05:24] + JOB_ACCOUNTING=gnutime [2024-04-16 10:05:24] + '[' -z gnutime ']' [2024-04-16 10:05:24] + export PANDA_JSID=harvester-CERN_central_ACTA [2024-04-16 10:05:24] + PANDA_JSID=harvester-CERN_central_ACTA [2024-04-16 10:05:24] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-04-14/BOINC_MCORE/6175544537.out [2024-04-16 10:05:24] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-04-14/BOINC_MCORE/6175544537.out [2024-04-16 10:05:24] + export PILOT_NOKILL=YES [2024-04-16 10:05:24] + PILOT_NOKILL=YES [2024-04-16 10:05:24] + export GRID_GLOBAL_JOBID=tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-16 10:05:24] + GRID_GLOBAL_JOBID=tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-16 10:05:24] + export GRID_GLOBAL_JOBURL=https://arc-boinc-06.cern.ch:443/arex/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-16 10:05:24] + GRID_GLOBAL_JOBURL=https://arc-boinc-06.cern.ch:443/arex/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-16 10:05:24] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2024-04-16 10:05:24] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2024-04-16 10:05:24] + export GRID_GLOBAL_JOBHOST=arc-boinc-06.cern.ch [2024-04-16 10:05:24] + GRID_GLOBAL_JOBHOST=arc-boinc-06.cern.ch [2024-04-16 10:05:24] ++ pwd [2024-04-16 10:05:24] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot8/slots/0 [2024-04-16 10:05:24] + RUNTIME_JOB_STDIN=/dev/null [2024-04-16 10:05:24] ++ pwd [2024-04-16 10:05:24] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot8/slots/0/log.38106738._000969.job.log.1 [2024-04-16 10:05:24] ++ pwd [2024-04-16 10:05:24] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot8/slots/0/log.38106738._000969.job.log.1 [2024-04-16 10:05:24] ++ pwd [2024-04-16 10:05:24] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0.diag [2024-04-16 10:05:24] + '[' '!' -z '' ']' [2024-04-16 10:05:24] + RUNTIME_LOCAL_SCRATCH_DIR= [2024-04-16 10:05:24] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv [2024-04-16 10:05:24] + RUNTIME_FRONTEND_SEES_NODE= [2024-04-16 10:05:24] + RUNTIME_NODE_SEES_FRONTEND=yes [2024-04-16 10:05:24] + '[' '!' -z '' ']' [2024-04-16 10:05:24] + '[' -z yes ']' [2024-04-16 10:05:24] ++ pwd [2024-04-16 10:05:24] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-16 10:05:24] + runtimeenvironments= [2024-04-16 10:05:24] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2024-04-16 10:05:24] + RTE_function_0 1 [2024-04-16 10:05:24] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-16 10:05:24] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-16 10:05:24] + export BOINC_APP=ATLAS [2024-04-16 10:05:24] + BOINC_APP=ATLAS [2024-04-16 10:05:24] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-16 10:05:24] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-16 10:05:24] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-16 10:05:24] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-16 10:05:24] + '[' -z 1 ']' [2024-04-16 10:05:24] + '[' 1 == 1 ']' [2024-04-16 10:05:24] + shift [2024-04-16 10:05:24] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)' [2024-04-16 10:05:24] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-16 10:05:24] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)' [2024-04-16 10:05:24] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/ [2024-04-16 10:05:24] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/ [2024-04-16 10:05:24] + '[' -e /scratch/boinc/var/slot8/slots/0/init_data.xml ']' [2024-04-16 10:05:24] + grep '<use_http_proxy/>' /scratch/boinc/var/slot8/slots/0/init_data.xml [2024-04-16 10:05:24] + '[' -e /scratch/boinc/var/slot8/slots/0/init_data.xml ']' [2024-04-16 10:05:24] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot8/slots/0/init_data.xml [2024-04-16 10:05:24] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)' [2024-04-16 10:05:24] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-16 10:05:24] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"' [2024-04-16 10:05:24] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-16 10:05:24] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-16 10:05:24] + '[' 0 -ne 0 ']' [2024-04-16 10:05:24] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;' [2024-04-16 10:05:24] + '[' -f /etc/os-release ']' [2024-04-16 10:05:24] +++ cat /etc/os-release [2024-04-16 10:05:24] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"' [2024-04-16 10:05:24] +++ NAME='CentOS Linux' [2024-04-16 10:05:24] +++ VERSION='7 (Core)' [2024-04-16 10:05:24] +++ ID=centos [2024-04-16 10:05:24] +++ ID_LIKE='rhel fedora' [2024-04-16 10:05:24] +++ VERSION_ID=7 [2024-04-16 10:05:24] +++ PRETTY_NAME='CentOS Linux 7 (Core)' [2024-04-16 10:05:24] +++ ANSI_COLOR='0;31' [2024-04-16 10:05:24] +++ CPE_NAME=cpe:/o:centos:centos:7 [2024-04-16 10:05:24] +++ HOME_URL=https://www.centos.org/ [2024-04-16 10:05:24] +++ BUG_REPORT_URL=https://bugs.centos.org/ [2024-04-16 10:05:24] +++ CENTOS_MANTISBT_PROJECT=CentOS-7 [2024-04-16 10:05:24] +++ CENTOS_MANTISBT_PROJECT_VERSION=7 [2024-04-16 10:05:24] +++ REDHAT_SUPPORT_PRODUCT=centos [2024-04-16 10:05:24] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7 [2024-04-16 10:05:24] ++ echo 'CentOS Linux 7 (Core)' [2024-04-16 10:05:24] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)' [2024-04-16 10:05:24] + '[' -n 'CentOS Linux 7 (Core)' ']' [2024-04-16 10:05:24] + echo 'systemsoftware=CentOS Linux 7 (Core)' [2024-04-16 10:05:24] + HOME=/scratch/boinc/var/slot8/slots/0 [2024-04-16 10:05:24] + export HOME [2024-04-16 10:05:24] + cd /scratch/boinc/var/slot8/slots/0 [2024-04-16 10:05:24] + '[' '!' -z '' ']' [2024-04-16 10:05:24] + '[' -z '' ']' [2024-04-16 10:05:24] ++ /bin/hostname -f [2024-04-16 10:05:24] + nodename=skurut29.grid.cesnet.cz [2024-04-16 10:05:24] + echo nodename=skurut29.grid.cesnet.cz [2024-04-16 10:05:24] + echo Processors=1 [2024-04-16 10:05:24] + echo Benchmark=HEPSPEC:1.0 [2024-04-16 10:05:24] + executable=./runpilot2-wrapper.sh [2024-04-16 10:05:24] + '[' '!' -f ./runpilot2-wrapper.sh ']' [2024-04-16 10:05:24] ++ dd if=./runpilot2-wrapper.sh count=1 [2024-04-16 10:05:24] ++ head -n 1 [2024-04-16 10:05:24] ++ tr -d '\0' [2024-04-16 10:05:24] + line1='#!/bin/bash' [2024-04-16 10:05:24] ++ echo '#!/bin/bash' [2024-04-16 10:05:24] ++ sed -n 's/^#! *//p' [2024-04-16 10:05:24] + shebang=/bin/bash [2024-04-16 10:05:24] ++ echo /bin/bash [2024-04-16 10:05:24] ++ awk '{print $1}' [2024-04-16 10:05:24] + interpreter=/bin/bash [2024-04-16 10:05:24] + '[' /bin/bash = /usr/bin/env ']' [2024-04-16 10:05:24] + '[' x/bin/bash = x ']' [2024-04-16 10:05:24] + type /bin/bash [2024-04-16 10:05:24] + '[' xgnutime = xgnutime ']' [2024-04-16 10:05:24] + /usr/bin/time -o /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.2.4 -z -t --piloturl local --mute --container [2024-04-16 10:05:24] + RESULT=2 [2024-04-16 10:05:24] + sed -i -e /nodename=/d /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-16 10:05:24] ++ awk -F '>' '{print $2}' [2024-04-16 10:05:24] ++ grep domain_name init_data.xml [2024-04-16 10:05:24] ++ awk -F '<' '{print $1}' [2024-04-16 10:05:24] ++ sed -e 's# #_#g' [2024-04-16 10:05:24] + hostname=skurut29.grid.cesnet.cz [2024-04-16 10:05:24] ++ grep user_name init_data.xml [2024-04-16 10:05:24] ++ awk -F '>' '{print $2}' [2024-04-16 10:05:24] ++ awk -F '<' '{print $1}' [2024-04-16 10:05:24] ++ sed -e 's# #_#g' [2024-04-16 10:05:24] + username=praguelcg2 [2024-04-16 10:05:24] + nodename=praguelcg2@skurut29.grid.cesnet.cz [2024-04-16 10:05:24] + echo nodename=praguelcg2@skurut29.grid.cesnet.cz [2024-04-16 10:05:24] + '[' -n 4 ']' [2024-04-16 10:05:24] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-16 10:05:24] + echo exitcode=2 [2024-04-16 10:05:24] + runtimeenvironments= [2024-04-16 10:05:24] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2024-04-16 10:05:24] + RTE_function_0 2 [2024-04-16 10:05:24] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-16 10:05:24] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-16 10:05:24] + export BOINC_APP=ATLAS [2024-04-16 10:05:24] + BOINC_APP=ATLAS [2024-04-16 10:05:24] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-16 10:05:24] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-16 10:05:24] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-16 10:05:24] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-16 10:05:24] + '[' -z 2 ']' [2024-04-16 10:05:24] + '[' 2 == 1 ']' [2024-04-16 10:05:24] + '[' 0 -ne 0 ']' [2024-04-16 10:05:24] + echo 'zip all output files' [2024-04-16 10:05:24] + flist='*.diag ' [2024-04-16 10:05:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-16 10:05:24] + '[' -e ./heartbeat.json ']' [2024-04-16 10:05:24] + flist='*.diag ./heartbeat.json' [2024-04-16 10:05:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-16 10:05:24] + '[' -e ./output.list ']' [2024-04-16 10:05:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-16 10:05:24] + '[' -e ./log.38106738._000969.job.log.1 ']' [2024-04-16 10:05:24] + flist='*.diag ./heartbeat.json ./log.38106738._000969.job.log.1' [2024-04-16 10:05:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-16 10:05:24] + '[' -e ./log.38106738._000969.job.log.1 ']' [2024-04-16 10:05:24] + flist='*.diag ./heartbeat.json ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1' [2024-04-16 10:05:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-16 10:05:24] + '[' -e ./gmlog/ ']' [2024-04-16 10:05:24] + '[' -f output.list ']' [2024-04-16 10:05:24] + tar cvf result.tar.gz tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag ./heartbeat.json ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 [2024-04-16 10:05:24] + '[' xgnutime = xcgroup ']' [2024-04-16 10:05:24] + '[' -n '' ']' [2024-04-16 10:05:24] + '[' -n '' ']' [2024-04-16 10:05:24] ++ date +%s [2024-04-16 10:05:24] + ACCOUNTING_ENDTIME=1713254723 [2024-04-16 10:05:24] ++ date -d '1970-01-01 UTC 1713254537 seconds' +%Y%m%d%H%M%SZ [2024-04-16 10:05:24] + echo LRMSStartTime=20240416100217Z [2024-04-16 10:05:24] ++ date -d '1970-01-01 UTC 1713254723 seconds' +%Y%m%d%H%M%SZ [2024-04-16 10:05:24] + echo LRMSEndTime=20240416100523Z [2024-04-16 10:05:24] + echo walltime=186 [2024-04-16 10:05:24] + echo exitcode=2 [2024-04-16 10:05:24] + exit 2 [2024-04-16 10:05:24] ./runtime_log.err [2024-04-16 10:05:24] ./pilotlog.txt [2024-04-16 10:05:24] ./runtime_log [2024-04-16 10:05:24] ./log.38106738._000969.job.log.1 [2024-04-16 10:05:24] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc [2024-04-16 10:05:24] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc [2024-04-16 10:05:24] ./pilot3/pilot/util/realtimelogger.py [2024-04-16 10:05:24] ./pilot3/pilot/util/loggingsupport.py [2024-04-16 10:05:24] ./PanDA_Pilot-6175544537/log.EVNTtoHITS [2024-04-16 10:05:24] ./PanDA_Pilot-6175544537/prmon.log [2024-04-16 10:05:24] ./PanDA_Pilot-6175544537/pilotlog.txt [2024-04-16 10:05:24] ./PanDA_Pilot-6175544537/PoolFileCatalog.xml 22:29:22 (1395756): wrapper (7.7.26015): starting 22:29:22 (1395756): wrapper: running run_atlas (--nthreads 4) [2024-04-17 22:29:22] Arguments: --nthreads 4 [2024-04-17 22:29:22] Threads: 4 [2024-04-17 22:29:22] This job has been restarted, cleaning up previous attempt [2024-04-17 22:29:22] Checking for CVMFS [2024-04-17 22:29:22] No cvmfs_config command found, will try listing directly [2024-04-17 22:29:22] CVMFS is ok [2024-04-17 22:29:22] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-04-17 22:29:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-04-17 22:29:22] Further information can be found at the LHC@home message board. [2024-04-17 22:29:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-04-17 22:29:22] Checking for apptainer binary... [2024-04-17 22:29:22] which: no apptainer in ((null)) [2024-04-17 22:29:22] apptainer is not installed, using version from CVMFS [2024-04-17 22:29:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-04-17 22:29:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz [2024-04-17 22:29:23] apptainer works [2024-04-17 22:29:23] Set ATHENA_PROC_NUMBER=4 [2024-04-17 22:29:23] Set ATHENA_CORE_NUMBER=4 [2024-04-17 22:29:23] Starting ATLAS job with PandaID=6175544537 [2024-04-17 22:29:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh 14:25:27 (3140601): wrapper (7.7.26015): starting 14:25:27 (3140601): wrapper: running run_atlas (--nthreads 4) [2024-04-18 14:25:27] Arguments: --nthreads 4 [2024-04-18 14:25:27] Threads: 4 [2024-04-18 14:25:27] This job has been restarted, cleaning up previous attempt [2024-04-18 14:25:27] Checking for CVMFS [2024-04-18 14:25:27] No cvmfs_config command found, will try listing directly [2024-04-18 14:25:27] CVMFS is ok [2024-04-18 14:25:27] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-04-18 14:25:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-04-18 14:25:27] Further information can be found at the LHC@home message board. [2024-04-18 14:25:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-04-18 14:25:27] Checking for apptainer binary... [2024-04-18 14:25:27] which: no apptainer in ((null)) [2024-04-18 14:25:27] apptainer is not installed, using version from CVMFS [2024-04-18 14:25:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-04-18 14:25:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz [2024-04-18 14:25:28] apptainer works [2024-04-18 14:25:28] Set ATHENA_PROC_NUMBER=4 [2024-04-18 14:25:28] Set ATHENA_CORE_NUMBER=4 [2024-04-18 14:25:28] Starting ATLAS job with PandaID=6175544537 [2024-04-18 14:25:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-04-18 14:28:36] Job failed [2024-04-18 14:28:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment [2024-04-18 14:28:36] ++ pwd [2024-04-18 14:28:36] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/ [2024-04-18 14:28:36] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/ [2024-04-18 14:28:36] + mv ATLAS.root_0 EVNT.38106735._000020.pool.root.1 [2024-04-18 14:28:36] mv: 'ATLAS.root_0' and 'EVNT.38106735._000020.pool.root.1' are the same file [2024-04-18 14:28:36] + tar --strip-components=5 -xvf input.tar.gz [2024-04-18 14:28:36] + umask 077 [2024-04-18 14:28:36] ++ date +%s [2024-04-18 14:28:36] + ACCOUNTING_STARTTIME=1713443128 [2024-04-18 14:28:36] + echo 'Detecting resource accounting method available for the job.' [2024-04-18 14:28:36] Detecting resource accounting method available for the job. [2024-04-18 14:28:36] + JOB_ACCOUNTING= [2024-04-18 14:28:36] + command -v arc-job-cgroup [2024-04-18 14:28:36] + '[' -z '' ']' [2024-04-18 14:28:36] + GNU_TIME=/usr/bin/time [2024-04-18 14:28:36] + echo 'Looking for /usr/bin/time tool for accounting measurements' [2024-04-18 14:28:36] Looking for /usr/bin/time tool for accounting measurements [2024-04-18 14:28:36] + '[' '!' -z /usr/bin/time ']' [2024-04-18 14:28:36] + /usr/bin/time --version [2024-04-18 14:28:36] + echo 'GNU time found and will be used for job accounting.' [2024-04-18 14:28:36] GNU time found and will be used for job accounting. [2024-04-18 14:28:36] + JOB_ACCOUNTING=gnutime [2024-04-18 14:28:36] + '[' -z gnutime ']' [2024-04-18 14:28:36] + export PANDA_JSID=harvester-CERN_central_ACTA [2024-04-18 14:28:36] + PANDA_JSID=harvester-CERN_central_ACTA [2024-04-18 14:28:36] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-04-14/BOINC_MCORE/6175544537.out [2024-04-18 14:28:36] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-04-14/BOINC_MCORE/6175544537.out [2024-04-18 14:28:36] + export PILOT_NOKILL=YES [2024-04-18 14:28:36] + PILOT_NOKILL=YES [2024-04-18 14:28:36] + export GRID_GLOBAL_JOBID=tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-18 14:28:36] + GRID_GLOBAL_JOBID=tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-18 14:28:36] + export GRID_GLOBAL_JOBURL=https://arc-boinc-06.cern.ch:443/arex/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-18 14:28:36] + GRID_GLOBAL_JOBURL=https://arc-boinc-06.cern.ch:443/arex/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-18 14:28:36] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2024-04-18 14:28:36] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2024-04-18 14:28:36] + export GRID_GLOBAL_JOBHOST=arc-boinc-06.cern.ch [2024-04-18 14:28:36] + GRID_GLOBAL_JOBHOST=arc-boinc-06.cern.ch [2024-04-18 14:28:36] ++ pwd [2024-04-18 14:28:36] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot8/slots/0 [2024-04-18 14:28:36] + RUNTIME_JOB_STDIN=/dev/null [2024-04-18 14:28:36] ++ pwd [2024-04-18 14:28:36] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot8/slots/0/log.38106738._000969.job.log.1 [2024-04-18 14:28:36] ++ pwd [2024-04-18 14:28:36] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot8/slots/0/log.38106738._000969.job.log.1 [2024-04-18 14:28:36] ++ pwd [2024-04-18 14:28:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0.diag [2024-04-18 14:28:36] + '[' '!' -z '' ']' [2024-04-18 14:28:36] + RUNTIME_LOCAL_SCRATCH_DIR= [2024-04-18 14:28:36] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv [2024-04-18 14:28:36] + RUNTIME_FRONTEND_SEES_NODE= [2024-04-18 14:28:36] + RUNTIME_NODE_SEES_FRONTEND=yes [2024-04-18 14:28:36] + '[' '!' -z '' ']' [2024-04-18 14:28:36] + '[' -z yes ']' [2024-04-18 14:28:36] ++ pwd [2024-04-18 14:28:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-18 14:28:36] + runtimeenvironments= [2024-04-18 14:28:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2024-04-18 14:28:36] + RTE_function_0 1 [2024-04-18 14:28:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-18 14:28:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-18 14:28:36] + export BOINC_APP=ATLAS [2024-04-18 14:28:36] + BOINC_APP=ATLAS [2024-04-18 14:28:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-18 14:28:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-18 14:28:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-18 14:28:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-18 14:28:36] + '[' -z 1 ']' [2024-04-18 14:28:36] + '[' 1 == 1 ']' [2024-04-18 14:28:36] + shift [2024-04-18 14:28:36] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)' [2024-04-18 14:28:36] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-18 14:28:36] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)' [2024-04-18 14:28:36] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/ [2024-04-18 14:28:36] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/ [2024-04-18 14:28:36] + '[' -e /scratch/boinc/var/slot8/slots/0/init_data.xml ']' [2024-04-18 14:28:36] + grep '<use_http_proxy/>' /scratch/boinc/var/slot8/slots/0/init_data.xml [2024-04-18 14:28:36] + '[' -e /scratch/boinc/var/slot8/slots/0/init_data.xml ']' [2024-04-18 14:28:36] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot8/slots/0/init_data.xml [2024-04-18 14:28:36] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)' [2024-04-18 14:28:36] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-18 14:28:36] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"' [2024-04-18 14:28:36] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-18 14:28:36] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-18 14:28:36] + '[' 0 -ne 0 ']' [2024-04-18 14:28:36] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;' [2024-04-18 14:28:36] + '[' -f /etc/os-release ']' [2024-04-18 14:28:36] +++ cat /etc/os-release [2024-04-18 14:28:36] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"' [2024-04-18 14:28:36] +++ NAME='CentOS Linux' [2024-04-18 14:28:36] +++ VERSION='7 (Core)' [2024-04-18 14:28:36] +++ ID=centos [2024-04-18 14:28:36] +++ ID_LIKE='rhel fedora' [2024-04-18 14:28:36] +++ VERSION_ID=7 [2024-04-18 14:28:36] +++ PRETTY_NAME='CentOS Linux 7 (Core)' [2024-04-18 14:28:36] +++ ANSI_COLOR='0;31' [2024-04-18 14:28:36] +++ CPE_NAME=cpe:/o:centos:centos:7 [2024-04-18 14:28:36] +++ HOME_URL=https://www.centos.org/ [2024-04-18 14:28:36] +++ BUG_REPORT_URL=https://bugs.centos.org/ [2024-04-18 14:28:36] +++ CENTOS_MANTISBT_PROJECT=CentOS-7 [2024-04-18 14:28:36] +++ CENTOS_MANTISBT_PROJECT_VERSION=7 [2024-04-18 14:28:36] +++ REDHAT_SUPPORT_PRODUCT=centos [2024-04-18 14:28:36] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7 [2024-04-18 14:28:36] ++ echo 'CentOS Linux 7 (Core)' [2024-04-18 14:28:36] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)' [2024-04-18 14:28:36] + '[' -n 'CentOS Linux 7 (Core)' ']' [2024-04-18 14:28:36] + echo 'systemsoftware=CentOS Linux 7 (Core)' [2024-04-18 14:28:36] + HOME=/scratch/boinc/var/slot8/slots/0 [2024-04-18 14:28:36] + export HOME [2024-04-18 14:28:36] + cd /scratch/boinc/var/slot8/slots/0 [2024-04-18 14:28:36] + '[' '!' -z '' ']' [2024-04-18 14:28:36] + '[' -z '' ']' [2024-04-18 14:28:36] ++ /bin/hostname -f [2024-04-18 14:28:36] + nodename=skurut29.grid.cesnet.cz [2024-04-18 14:28:36] + echo nodename=skurut29.grid.cesnet.cz [2024-04-18 14:28:36] + echo Processors=1 [2024-04-18 14:28:36] + echo Benchmark=HEPSPEC:1.0 [2024-04-18 14:28:36] + executable=./runpilot2-wrapper.sh [2024-04-18 14:28:36] + '[' '!' -f ./runpilot2-wrapper.sh ']' [2024-04-18 14:28:36] ++ dd if=./runpilot2-wrapper.sh count=1 [2024-04-18 14:28:36] ++ head -n 1 [2024-04-18 14:28:36] ++ tr -d '\0' [2024-04-18 14:28:36] + line1='#!/bin/bash' [2024-04-18 14:28:36] ++ echo '#!/bin/bash' [2024-04-18 14:28:36] ++ sed -n 's/^#! *//p' [2024-04-18 14:28:36] + shebang=/bin/bash [2024-04-18 14:28:36] ++ echo /bin/bash [2024-04-18 14:28:36] ++ awk '{print $1}' [2024-04-18 14:28:36] + interpreter=/bin/bash [2024-04-18 14:28:36] + '[' /bin/bash = /usr/bin/env ']' [2024-04-18 14:28:36] + '[' x/bin/bash = x ']' [2024-04-18 14:28:36] + type /bin/bash [2024-04-18 14:28:36] + '[' xgnutime = xgnutime ']' [2024-04-18 14:28:36] + /usr/bin/time -o /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.2.4 -z -t --piloturl local --mute --container [2024-04-18 14:28:36] + RESULT=2 [2024-04-18 14:28:36] + sed -i -e /nodename=/d /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-18 14:28:36] ++ grep domain_name init_data.xml [2024-04-18 14:28:36] ++ awk -F '>' '{print $2}' [2024-04-18 14:28:36] ++ awk -F '<' '{print $1}' [2024-04-18 14:28:36] ++ sed -e 's# #_#g' [2024-04-18 14:28:36] + hostname=skurut29.grid.cesnet.cz [2024-04-18 14:28:36] ++ grep user_name init_data.xml [2024-04-18 14:28:36] ++ awk -F '<' '{print $1}' [2024-04-18 14:28:36] ++ sed -e 's# #_#g' [2024-04-18 14:28:36] ++ awk -F '>' '{print $2}' [2024-04-18 14:28:36] + username=praguelcg2 [2024-04-18 14:28:36] + nodename=praguelcg2@skurut29.grid.cesnet.cz [2024-04-18 14:28:36] + echo nodename=praguelcg2@skurut29.grid.cesnet.cz [2024-04-18 14:28:36] + '[' -n 4 ']' [2024-04-18 14:28:36] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-18 14:28:36] + echo exitcode=2 [2024-04-18 14:28:36] + runtimeenvironments= [2024-04-18 14:28:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2024-04-18 14:28:36] + RTE_function_0 2 [2024-04-18 14:28:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-18 14:28:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-18 14:28:36] + export BOINC_APP=ATLAS [2024-04-18 14:28:36] + BOINC_APP=ATLAS [2024-04-18 14:28:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-18 14:28:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-18 14:28:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-18 14:28:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-18 14:28:36] + '[' -z 2 ']' [2024-04-18 14:28:36] + '[' 2 == 1 ']' [2024-04-18 14:28:36] + '[' 0 -ne 0 ']' [2024-04-18 14:28:36] + echo 'zip all output files' [2024-04-18 14:28:36] + flist='*.diag ' [2024-04-18 14:28:36] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-18 14:28:36] + '[' -e ./heartbeat.json ']' [2024-04-18 14:28:36] + flist='*.diag ./heartbeat.json' [2024-04-18 14:28:36] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-18 14:28:36] + '[' -e ./output.list ']' [2024-04-18 14:28:36] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-18 14:28:36] + '[' -e ./log.38106738._000969.job.log.1 ']' [2024-04-18 14:28:36] + flist='*.diag ./heartbeat.json ./log.38106738._000969.job.log.1' [2024-04-18 14:28:36] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-18 14:28:36] + '[' -e ./log.38106738._000969.job.log.1 ']' [2024-04-18 14:28:36] + flist='*.diag ./heartbeat.json ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1' [2024-04-18 14:28:36] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-18 14:28:36] + '[' -e ./gmlog/ ']' [2024-04-18 14:28:36] + '[' -f output.list ']' [2024-04-18 14:28:36] + tar cvf result.tar.gz tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag ./heartbeat.json ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 [2024-04-18 14:28:36] + '[' xgnutime = xcgroup ']' [2024-04-18 14:28:36] + '[' -n '' ']' [2024-04-18 14:28:36] + '[' -n '' ']' [2024-04-18 14:28:36] ++ date +%s [2024-04-18 14:28:36] + ACCOUNTING_ENDTIME=1713443315 [2024-04-18 14:28:36] ++ date -d '1970-01-01 UTC 1713443128 seconds' +%Y%m%d%H%M%SZ [2024-04-18 14:28:36] + echo LRMSStartTime=20240418142528Z [2024-04-18 14:28:36] ++ date -d '1970-01-01 UTC 1713443315 seconds' +%Y%m%d%H%M%SZ [2024-04-18 14:28:36] + echo LRMSEndTime=20240418142835Z [2024-04-18 14:28:36] + echo walltime=187 [2024-04-18 14:28:36] + echo exitcode=2 [2024-04-18 14:28:36] + exit 2 [2024-04-18 14:28:36] ./runtime_log.err [2024-04-18 14:28:36] ./pilotlog.txt [2024-04-18 14:28:36] ./runtime_log [2024-04-18 14:28:36] ./log.38106738._000969.job.log.1 [2024-04-18 14:28:36] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc [2024-04-18 14:28:36] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc [2024-04-18 14:28:36] ./pilot3/pilot/util/realtimelogger.py [2024-04-18 14:28:36] ./pilot3/pilot/util/loggingsupport.py [2024-04-18 14:28:36] ./PanDA_Pilot-6175544537/log.EVNTtoHITS [2024-04-18 14:28:36] ./PanDA_Pilot-6175544537/prmon.log [2024-04-18 14:28:36] ./PanDA_Pilot-6175544537/pilotlog.txt [2024-04-18 14:28:36] ./PanDA_Pilot-6175544537/PoolFileCatalog.xml 02:16:12 (226256): wrapper (7.7.26015): starting 02:16:12 (226256): wrapper: running run_atlas (--nthreads 4) [2024-04-19 02:16:12] Arguments: --nthreads 4 [2024-04-19 02:16:12] Threads: 4 [2024-04-19 02:16:12] This job has been restarted, cleaning up previous attempt [2024-04-19 02:16:12] Checking for CVMFS [2024-04-19 02:16:12] No cvmfs_config command found, will try listing directly [2024-04-19 02:16:12] CVMFS is ok [2024-04-19 02:16:12] Efficiency of ATLAS tasks can be improved by the following measure(s): [2024-04-19 02:16:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2024-04-19 02:16:12] Further information can be found at the LHC@home message board. [2024-04-19 02:16:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2024-04-19 02:16:12] Checking for apptainer binary... [2024-04-19 02:16:12] which: no apptainer in ((null)) [2024-04-19 02:16:12] apptainer is not installed, using version from CVMFS [2024-04-19 02:16:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2024-04-19 02:16:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz [2024-04-19 02:16:13] apptainer works [2024-04-19 02:16:13] Set ATHENA_PROC_NUMBER=4 [2024-04-19 02:16:13] Set ATHENA_CORE_NUMBER=4 [2024-04-19 02:16:13] Starting ATLAS job with PandaID=6175544537 [2024-04-19 02:16:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2024-04-19 02:19:24] Job failed [2024-04-19 02:19:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment [2024-04-19 02:19:24] ++ pwd [2024-04-19 02:19:24] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/ [2024-04-19 02:19:24] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot8/slots/0/ [2024-04-19 02:19:24] + mv ATLAS.root_0 EVNT.38106735._000020.pool.root.1 [2024-04-19 02:19:24] mv: 'ATLAS.root_0' and 'EVNT.38106735._000020.pool.root.1' are the same file [2024-04-19 02:19:24] + tar --strip-components=5 -xvf input.tar.gz [2024-04-19 02:19:24] + umask 077 [2024-04-19 02:19:24] ++ date +%s [2024-04-19 02:19:24] + ACCOUNTING_STARTTIME=1713485774 [2024-04-19 02:19:24] + echo 'Detecting resource accounting method available for the job.' [2024-04-19 02:19:24] Detecting resource accounting method available for the job. [2024-04-19 02:19:24] + JOB_ACCOUNTING= [2024-04-19 02:19:24] + command -v arc-job-cgroup [2024-04-19 02:19:24] + '[' -z '' ']' [2024-04-19 02:19:24] + GNU_TIME=/usr/bin/time [2024-04-19 02:19:24] + echo 'Looking for /usr/bin/time tool for accounting measurements' [2024-04-19 02:19:24] Looking for /usr/bin/time tool for accounting measurements [2024-04-19 02:19:24] + '[' '!' -z /usr/bin/time ']' [2024-04-19 02:19:24] + /usr/bin/time --version [2024-04-19 02:19:24] + echo 'GNU time found and will be used for job accounting.' [2024-04-19 02:19:24] GNU time found and will be used for job accounting. [2024-04-19 02:19:24] + JOB_ACCOUNTING=gnutime [2024-04-19 02:19:24] + '[' -z gnutime ']' [2024-04-19 02:19:24] + export PANDA_JSID=harvester-CERN_central_ACTA [2024-04-19 02:19:24] + PANDA_JSID=harvester-CERN_central_ACTA [2024-04-19 02:19:24] + export GTAG=http://aipanda404.cern.ch/data/jobs/2024-04-14/BOINC_MCORE/6175544537.out [2024-04-19 02:19:24] + GTAG=http://aipanda404.cern.ch/data/jobs/2024-04-14/BOINC_MCORE/6175544537.out [2024-04-19 02:19:24] + export PILOT_NOKILL=YES [2024-04-19 02:19:24] + PILOT_NOKILL=YES [2024-04-19 02:19:24] + export GRID_GLOBAL_JOBID=tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-19 02:19:24] + GRID_GLOBAL_JOBID=tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-19 02:19:24] + export GRID_GLOBAL_JOBURL=https://arc-boinc-06.cern.ch:443/arex/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-19 02:19:24] + GRID_GLOBAL_JOBURL=https://arc-boinc-06.cern.ch:443/arex/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m [2024-04-19 02:19:24] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2024-04-19 02:19:24] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2024-04-19 02:19:24] + export GRID_GLOBAL_JOBHOST=arc-boinc-06.cern.ch [2024-04-19 02:19:24] + GRID_GLOBAL_JOBHOST=arc-boinc-06.cern.ch [2024-04-19 02:19:24] ++ pwd [2024-04-19 02:19:24] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot8/slots/0 [2024-04-19 02:19:24] + RUNTIME_JOB_STDIN=/dev/null [2024-04-19 02:19:24] ++ pwd [2024-04-19 02:19:24] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot8/slots/0/log.38106738._000969.job.log.1 [2024-04-19 02:19:24] ++ pwd [2024-04-19 02:19:24] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot8/slots/0/log.38106738._000969.job.log.1 [2024-04-19 02:19:24] ++ pwd [2024-04-19 02:19:24] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0.diag [2024-04-19 02:19:24] + '[' '!' -z '' ']' [2024-04-19 02:19:24] + RUNTIME_LOCAL_SCRATCH_DIR= [2024-04-19 02:19:24] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv [2024-04-19 02:19:24] + RUNTIME_FRONTEND_SEES_NODE= [2024-04-19 02:19:24] + RUNTIME_NODE_SEES_FRONTEND=yes [2024-04-19 02:19:24] + '[' '!' -z '' ']' [2024-04-19 02:19:24] + '[' -z yes ']' [2024-04-19 02:19:24] ++ pwd [2024-04-19 02:19:24] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-19 02:19:24] + runtimeenvironments= [2024-04-19 02:19:24] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2024-04-19 02:19:24] + RTE_function_0 1 [2024-04-19 02:19:24] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-19 02:19:24] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-19 02:19:24] + export BOINC_APP=ATLAS [2024-04-19 02:19:24] + BOINC_APP=ATLAS [2024-04-19 02:19:24] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-19 02:19:24] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-19 02:19:24] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-19 02:19:24] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-19 02:19:24] + '[' -z 1 ']' [2024-04-19 02:19:24] + '[' 1 == 1 ']' [2024-04-19 02:19:24] + shift [2024-04-19 02:19:24] + FRONTIER_SQUID_NDGF='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)' [2024-04-19 02:19:24] + FRONTIER_BACKUP='(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-19 02:19:24] + FRONTIER_WPAD='(proxyconfigurl=http://grid-wpad/wpad.dat)' [2024-04-19 02:19:24] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/ [2024-04-19 02:19:24] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot8/slots/0/ [2024-04-19 02:19:24] + '[' -e /scratch/boinc/var/slot8/slots/0/init_data.xml ']' [2024-04-19 02:19:24] + grep '<use_http_proxy/>' /scratch/boinc/var/slot8/slots/0/init_data.xml [2024-04-19 02:19:24] + '[' -e /scratch/boinc/var/slot8/slots/0/init_data.xml ']' [2024-04-19 02:19:24] + grep '.cern.ch</domain_name>' /scratch/boinc/var/slot8/slots/0/init_data.xml [2024-04-19 02:19:24] + FRONTIER_SERVER_URLS='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)' [2024-04-19 02:19:24] + FRONTIER_PROXY_URLS='(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-19 02:19:24] + echo 'export FRONTIER_SERVER="(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)"' [2024-04-19 02:19:24] + export 'FRONTIER_SERVER=(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-19 02:19:24] + FRONTIER_SERVER='(serverurl=http://atlascern-frontier.openhtc.io:8080/atlr)(serverurl=http://atlasfrontier-ai.cern.ch:8000/atlr)(proxyurl=http://db-atlas-squid.ndgf.org:3128)(proxyurl=http://squid.vega.izum.si:3128)(proxyurl=http://grid-proxy.ijs.si:3128)(proxyurl=http://atlas-db-squid1.grid.uiocloud.no:3128)(backupproxyurl=http://atlasbpfrontier.cern.ch:3127)(backupproxyurl=http://atlasbpfrontier.fnal.gov:3127)' [2024-04-19 02:19:24] + '[' 0 -ne 0 ']' [2024-04-19 02:19:24] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;' [2024-04-19 02:19:24] + '[' -f /etc/os-release ']' [2024-04-19 02:19:24] +++ cat /etc/os-release [2024-04-19 02:19:24] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"' [2024-04-19 02:19:24] +++ NAME='CentOS Linux' [2024-04-19 02:19:24] +++ VERSION='7 (Core)' [2024-04-19 02:19:24] +++ ID=centos [2024-04-19 02:19:24] +++ ID_LIKE='rhel fedora' [2024-04-19 02:19:24] +++ VERSION_ID=7 [2024-04-19 02:19:24] +++ PRETTY_NAME='CentOS Linux 7 (Core)' [2024-04-19 02:19:24] +++ ANSI_COLOR='0;31' [2024-04-19 02:19:24] +++ CPE_NAME=cpe:/o:centos:centos:7 [2024-04-19 02:19:24] +++ HOME_URL=https://www.centos.org/ [2024-04-19 02:19:24] +++ BUG_REPORT_URL=https://bugs.centos.org/ [2024-04-19 02:19:24] +++ CENTOS_MANTISBT_PROJECT=CentOS-7 [2024-04-19 02:19:24] +++ CENTOS_MANTISBT_PROJECT_VERSION=7 [2024-04-19 02:19:24] +++ REDHAT_SUPPORT_PRODUCT=centos [2024-04-19 02:19:24] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7 [2024-04-19 02:19:24] ++ echo 'CentOS Linux 7 (Core)' [2024-04-19 02:19:24] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)' [2024-04-19 02:19:24] + '[' -n 'CentOS Linux 7 (Core)' ']' [2024-04-19 02:19:24] + echo 'systemsoftware=CentOS Linux 7 (Core)' [2024-04-19 02:19:24] + HOME=/scratch/boinc/var/slot8/slots/0 [2024-04-19 02:19:24] + export HOME [2024-04-19 02:19:24] + cd /scratch/boinc/var/slot8/slots/0 [2024-04-19 02:19:24] + '[' '!' -z '' ']' [2024-04-19 02:19:24] + '[' -z '' ']' [2024-04-19 02:19:24] ++ /bin/hostname -f [2024-04-19 02:19:24] + nodename=skurut29.grid.cesnet.cz [2024-04-19 02:19:24] + echo nodename=skurut29.grid.cesnet.cz [2024-04-19 02:19:24] + echo Processors=1 [2024-04-19 02:19:24] + echo Benchmark=HEPSPEC:1.0 [2024-04-19 02:19:24] + executable=./runpilot2-wrapper.sh [2024-04-19 02:19:24] + '[' '!' -f ./runpilot2-wrapper.sh ']' [2024-04-19 02:19:24] ++ dd if=./runpilot2-wrapper.sh count=1 [2024-04-19 02:19:24] ++ head -n 1 [2024-04-19 02:19:24] ++ tr -d '\0' [2024-04-19 02:19:24] + line1='#!/bin/bash' [2024-04-19 02:19:24] ++ sed -n 's/^#! *//p' [2024-04-19 02:19:24] ++ echo '#!/bin/bash' [2024-04-19 02:19:24] + shebang=/bin/bash [2024-04-19 02:19:24] ++ awk '{print $1}' [2024-04-19 02:19:24] ++ echo /bin/bash [2024-04-19 02:19:24] + interpreter=/bin/bash [2024-04-19 02:19:24] + '[' /bin/bash = /usr/bin/env ']' [2024-04-19 02:19:24] + '[' x/bin/bash = x ']' [2024-04-19 02:19:24] + type /bin/bash [2024-04-19 02:19:24] + '[' xgnutime = xgnutime ']' [2024-04-19 02:19:24] + /usr/bin/time -o /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type SCORE_HIMEM --pilotversion 3.7.2.4 -z -t --piloturl local --mute --container [2024-04-19 02:19:24] + RESULT=2 [2024-04-19 02:19:24] + sed -i -e /nodename=/d /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-19 02:19:24] ++ grep domain_name init_data.xml [2024-04-19 02:19:24] ++ awk -F '>' '{print $2}' [2024-04-19 02:19:24] ++ awk -F '<' '{print $1}' [2024-04-19 02:19:24] ++ sed -e 's# #_#g' [2024-04-19 02:19:24] + hostname=skurut29.grid.cesnet.cz [2024-04-19 02:19:24] ++ grep user_name init_data.xml [2024-04-19 02:19:24] ++ awk -F '>' '{print $2}' [2024-04-19 02:19:24] ++ awk -F '<' '{print $1}' [2024-04-19 02:19:24] ++ sed -e 's# #_#g' [2024-04-19 02:19:24] + username=praguelcg2 [2024-04-19 02:19:24] + nodename=praguelcg2@skurut29.grid.cesnet.cz [2024-04-19 02:19:24] + echo nodename=praguelcg2@skurut29.grid.cesnet.cz [2024-04-19 02:19:24] + '[' -n 4 ']' [2024-04-19 02:19:24] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot8/slots/0/tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag [2024-04-19 02:19:24] + echo exitcode=2 [2024-04-19 02:19:24] + runtimeenvironments= [2024-04-19 02:19:24] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2024-04-19 02:19:24] + RTE_function_0 2 [2024-04-19 02:19:24] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-19 02:19:24] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2024-04-19 02:19:24] + export BOINC_APP=ATLAS [2024-04-19 02:19:24] + BOINC_APP=ATLAS [2024-04-19 02:19:24] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-19 02:19:24] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2024-04-19 02:19:24] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-19 02:19:24] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2024-04-19 02:19:24] + '[' -z 2 ']' [2024-04-19 02:19:24] + '[' 2 == 1 ']' [2024-04-19 02:19:24] + '[' 0 -ne 0 ']' [2024-04-19 02:19:24] + echo 'zip all output files' [2024-04-19 02:19:24] + flist='*.diag ' [2024-04-19 02:19:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-19 02:19:24] + '[' -e ./heartbeat.json ']' [2024-04-19 02:19:24] + flist='*.diag ./heartbeat.json' [2024-04-19 02:19:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-19 02:19:24] + '[' -e ./output.list ']' [2024-04-19 02:19:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-19 02:19:24] + '[' -e ./log.38106738._000969.job.log.1 ']' [2024-04-19 02:19:24] + flist='*.diag ./heartbeat.json ./log.38106738._000969.job.log.1' [2024-04-19 02:19:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-19 02:19:24] + '[' -e ./log.38106738._000969.job.log.1 ']' [2024-04-19 02:19:24] + flist='*.diag ./heartbeat.json ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1' [2024-04-19 02:19:24] + for f in ./heartbeat.json ./output.list ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 ./gmlog/ [2024-04-19 02:19:24] + '[' -e ./gmlog/ ']' [2024-04-19 02:19:24] + '[' -f output.list ']' [2024-04-19 02:19:24] + tar cvf result.tar.gz tPxKDmtR9F5np2BDcpmwOghnABFKDmABFKDmLxDWDmZfIKDm3Npj0m.diag ./heartbeat.json ./log.38106738._000969.job.log.1 ./log.38106738._000969.job.log.1 [2024-04-19 02:19:24] + '[' xgnutime = xcgroup ']' [2024-04-19 02:19:24] + '[' -n '' ']' [2024-04-19 02:19:24] + '[' -n '' ']' [2024-04-19 02:19:24] ++ date +%s [2024-04-19 02:19:24] + ACCOUNTING_ENDTIME=1713485964 [2024-04-19 02:19:24] ++ date -d '1970-01-01 UTC 1713485774 seconds' +%Y%m%d%H%M%SZ [2024-04-19 02:19:24] + echo LRMSStartTime=20240419021614Z [2024-04-19 02:19:24] ++ date -d '1970-01-01 UTC 1713485964 seconds' +%Y%m%d%H%M%SZ [2024-04-19 02:19:24] + echo LRMSEndTime=20240419021924Z [2024-04-19 02:19:24] + echo walltime=190 [2024-04-19 02:19:24] + echo exitcode=2 [2024-04-19 02:19:24] + exit 2 [2024-04-19 02:19:24] ./runtime_log.err [2024-04-19 02:19:24] ./pilotlog.txt [2024-04-19 02:19:24] ./runtime_log [2024-04-19 02:19:24] ./log.38106738._000969.job.log.1 [2024-04-19 02:19:24] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc [2024-04-19 02:19:24] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc [2024-04-19 02:19:24] ./pilot3/pilot/util/realtimelogger.py [2024-04-19 02:19:24] ./pilot3/pilot/util/loggingsupport.py [2024-04-19 02:19:24] ./PanDA_Pilot-6175544537/log.EVNTtoHITS [2024-04-19 02:19:24] ./PanDA_Pilot-6175544537/prmon.log [2024-04-19 02:19:24] ./PanDA_Pilot-6175544537/pilotlog.txt [2024-04-19 02:19:24] ./PanDA_Pilot-6175544537/PoolFileCatalog.xml 02:29:25 (226256): run_atlas exited; CPU time 13.357336 02:29:25 (226256): app exit status: 0x1 02:29:25 (226256): called boinc_finish(195) </stderr_txt> ]]>
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