Name | Y6JLDmi66ovnsSi4apGgGQJmABFKDmABFKDmVk2PDmABFKDm7QZ42m_1 |
Workunit | 126435065 |
Created | 22 Nov 2019, 5:02:33 UTC |
Sent | 30 Nov 2019, 13:13:41 UTC |
Report deadline | 8 Dec 2019, 13:13:41 UTC |
Received | 30 Nov 2019, 21:20:38 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 10611925 |
Run time | 7 hours 19 min 28 sec |
CPU time | 2 days 8 hours 11 min 41 sec |
Validate state | Valid |
Credit | 2,793.81 |
Device peak FLOPS | 20.63 GFLOPS |
Application version | ATLAS Simulation v2.73 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.82 GB |
Peak swap size | 2.57 GB |
Peak disk usage | 660.38 MB |
<core_client_version>7.7.0</core_client_version> <![CDATA[ <stderr_txt> 14:00:54 (25493): wrapper (7.7.26015): starting 14:00:54 (25493): wrapper: running run_atlas (--nthreads 8) 2019-11-30 14:00:54,216: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img 2019-11-30 14:00:54,216: sys.argv = ['run_atlas', '--nthreads', '8'] 2019-11-30 14:00:54,217: THREADS=8 2019-11-30 14:00:54,218: Checking for CVMFS 2019-11-30 14:00:56,225: CVMFS is installed 2019-11-30 14:00:56,225: Checking for singularity binary... 2019-11-30 14:00:56,225: Found singularity at /bin/singularity 2019-11-30 14:00:56,226: Running singularity --version 2019-11-30 14:00:56,261: Singularity version is singularity version 3.2.1-1.1.el7 2019-11-30 14:00:56,261: Testing the function of Singularity... 2019-11-30 14:00:56,261: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname 2019-11-30 14:00:56,473: Singularity Works... 2019-11-30 14:00:56,474: copy /home/opc/boinc/slots/1/shared/ATLAS.root_0 2019-11-30 14:00:56,771: copy /home/opc/boinc/slots/1/shared/input.tar.gz 2019-11-30 14:00:56,772: copy /home/opc/boinc/slots/1/shared/RTE.tar.gz 2019-11-30 14:00:56,773: copy /home/opc/boinc/slots/1/shared/start_atlas.sh 2019-11-30 14:00:56,773: export ATHENA_PROC_NUMBER=8; 2019-11-30 14:00:56,797: start atlas job with PandaID=4541346145 2019-11-30 14:00:56,797: cmd = singularity exec --pwd /home/opc/boinc/slots/1 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err 2019-11-30 21:20:20,615: running cmd return value is 0 2019-11-30 21:20:20,616: Moving ./HITS.19056367._018135.pool.root.1 to shared/HITS.pool.root.1 2019-11-30 21:20:20,617: HITS result file: 2019-11-30 21:20:20,626: -rw-------. 1 root root 250092288 Nov 30 21:18 shared/HITS.pool.root.1 2019-11-30 21:20:20,628: **********************Error codes and diagnostics****************** 2019-11-30 21:20:20,628: pilotErrorCode : 0 2019-11-30 21:20:20,629: exeErrorCode : 0 2019-11-30 21:20:20,629: pilotErrorDiag : 2019-11-30 21:20:20,629: exeErrorDiag : 2019-11-30 21:20:20,629: *****************The last 200 lines of the pilot log****************** 2019-11-30 21:20:20,633: "wallTime": 1 }, "preExe": { "cpuTime": 1, "wallTime": 3 }, "total": { "cpuTime": 111, "wallTime": 162 }, "validation": { "cpuTime": 0, "wallTime": 0 }, "wallTime": 158 } }, "machine": { "cpu_family": "23", "linux_distribution": [ "CentOS Linux", "7.6.1810", "Core" ], "model": "1", "model_name": "AMD EPYC 7551 32-Core Processor", "node": "instance-20190625-1451-9035", "platform": "Linux-3.10.0-957.21.3.el7.x86_64-x86_64-with-centos-7.6.1810-Core" }, "transform": { "cpuEfficiency": 0.963, "cpuPWEfficiency": 0.9671, "cpuTime": 13, "cpuTimeTotal": 202536, "externalCpuTime": 424, "processedEvents": 200, "trfPredata": null, "wallTime": 26221 } } } 2019-11-30 21:19:52,103 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | update_server | xml:will send fileinfo 2019-11-30 21:19:52,103 | INFO | queue_monitor | pilot.control.job.4541346145 | send_state | pilot will not update the server (heartbeat message will be written to file) 2019-11-30 21:19:52,104 | INFO | queue_monitor | pilot.control.job.4541346145 | send_state | job 4541346145 has finished - writing final server update 2019-11-30 21:19:52,112 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted 2019-11-30 21:19:52,112 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time 2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 13.49 B/s (using 429 data points, chi2=-27191605540.709602) 2019-11-30 21:19:52,113 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_job_metrics | job metrics="coreCount=8 actualCoreCount=1 nEvents=200 workDirSize=47755943 leak=13.49" 2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.control.job.4541346145 | get_data_structure | total number of processed events: 200 (read) 2019-11-30 21:19:52,115 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/memory_monitor_summary.json (trf name=prmon) 2019-11-30 21:19:52,116 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 165022, 'nprocs': 16, 'nthreads': 1, 'rx_bytes': 749429344, 'wtime': 26243, 'rss': 18120948, 'write_bytes': 523059200, 'vmem': 27345164, 'read_bytes': 3383382016, 'stime': 407, 'tx_bytes': 162378596, 'pss': 3431669, 'wchar': 522324875, 'rchar': 5715557095, 'tx_packets': 96697, 'swap': 0, 'utime': 204084}, 'Avg': {'write_bytes': 19930, 'nprocs': 13, 'nthreads': 0, 'rx_bytes': 28556, 'rx_packets': 6, 'vmem': 24035795, 'read_bytes': 128920, 'swap': 0, 'tx_bytes': 6187, 'pss': 3198894, 'wchar': 19902, 'rchar': 217786, 'tx_packets': 3, 'rss': 16417357}} 2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | .............................. 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . Timing measurements: 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . get job = 0 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . initial setup = 2 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload setup = 0 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . total setup = 2 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-in = 1 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload execution = 26285 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-out = 3 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | .............................. 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-11-30 21:19:52,118 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_panda_tracer_log | PanDA tracer log does not exist: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pandatracerlog.txt (ignoring) 2019-11-30 21:19:52,118 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pilotlog.txt 2019-11-30 21:19:52,141 | WARNING | queue_monitor | pilot.util.auxiliary.4541346145 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log: - Log from pilotlog.txt -2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 13.49 B/s (using 429 data points, chi2=-27191605540.709602) 2019-11-30 21:19:52,113 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_job_metrics | job metrics="coreCount=8 actualCoreCount=1 nEvents=200 workDirSize=47755943 leak=13.49" 2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.control.job.4541346145 | get_data_structure | total number of processed events: 200 (read) 2019-11-30 21:19:52,115 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/memory_monitor_summary.json (trf name=prmon) 2019-11-30 21:19:52,116 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 165022, 'nprocs': 16, 'nthreads': 1, 'rx_bytes': 749429344, 'wtime': 26243, 'rss': 18120948, 'write_bytes': 523059200, 'vmem': 27345164, 'read_bytes': 3383382016, 'stime': 407, 'tx_bytes': 162378596, 'pss': 3431669, 'wchar': 522324875, 'rchar': 5715557095, 'tx_packets': 96697, 'swap': 0, 'utime': 204084}, 'Avg': {'write_bytes': 19930, 'nprocs': 13, 'nthreads': 0, 'rx_bytes': 28556, 'rx_packets': 6, 'vmem': 24035795, 'read_bytes': 128920, 'swap': 0, 'tx_bytes': 6187, 'pss': 3198894, 'wchar': 19902, 'rchar': 217786, 'tx_packets': 3, 'rss': 16417357}} 2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json 2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json 2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | .............................. 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . Timing measurements: 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . get job = 0 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . initial setup = 2 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload setup = 0 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . total setup = 2 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-in = 1 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload execution = 26285 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-out = 3 s 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | .............................. 2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-11-30 21:19:52,118 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_panda_tracer_log | PanDA tracer log does not exist: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pandatracerlog.txt (ignoring) 2019-11-30 21:19:52,118 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pilotlog.txt 2019-11-30 21:19:52,142 | DEBUG | queue_monitor | pilot.control.job.4541346145 | send_state | wrote heartbeat to file /home/opc/boinc/slots/1/heartbeat.json 2019-11-30 21:19:52,143 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4541346145 was dequeued from the monitored payloads queue 2019-11-30 21:19:53,168 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | 2019-11-30 21:19:53,168 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | job summary report 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | -------------------------------------------------- 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | PanDA job id: 4541346145 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | task id: 19056367 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | errors: (none) 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | status: LOG_TRANSFER = DONE 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | pilot state: finished 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | transexitcode: 0 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exeerrorcode: 0 2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exeerrordiag: 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exitcode: 0 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exitmsg: OK 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | cpuconsumptiontime: 202902 s 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | nevents: 200 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | neventsw: 0 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | pid: 32382 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | pgrp: 32382 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | corecount: 8 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | event service: False 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | -------------------------------------------------- 2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | 2019-11-30 21:19:53,171 | INFO | retrieve | pilot.control.job.4541346145 | has_job_completed | job 4541346145 has completed 2019-11-30 21:19:53,171 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called 2019-11-30 21:19:53,180 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145 2019-11-30 21:19:54,185 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [32382] 2019-11-30 21:19:54,185 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 32382 2019-11-30 21:19:54,185 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes 2019-11-30 21:19:55,189 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes 2019-11-30 21:19:55,189 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=32382 2019-11-30 21:19:55,239 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [32382] (in reverse order) 2019-11-30 21:19:55,288 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s) 2019-11-30 21:19:55,289 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs 2019-11-30 21:19:55,289 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-11-30 21:19:55,289 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging No handlers could be found for logger "pilot.util.mpi" 2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *************************************** 2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.2.2 (1) *** 2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *************************************** 2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | 2019-11-30 21:19:55,293 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM 2019-11-30 21:19:55,293 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information: 2019-11-30 21:19:55,356 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | LSB Version: :core-4.1-amd64:core-4.1-noarch Distributor ID: CentOS Description: CentOS Linux release 7.6.1810 (Core) Release: 7.6.1810 Codename: Core 2019-11-30 21:19:55,357 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *************************************** 2019-11-30 21:19:55,859 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/opc/boinc/slots/1 2019-11-30 21:19:55,882 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (33860616192 B) 2019-11-30 21:19:55,882 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-11-30 21:19:55,882 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished 2019-11-30 21:19:55,892 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended 2019-11-30 21:19:55,897 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-11-30 21:19:56,020 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished 2019-11-30 21:19:56,029 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-11-30 21:19:56,029 | DEBUG | job | pilot.control.job | control | [job] control thread has finished 2019-11-30 21:19:56,123 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-11-30 21:19:56,123 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished 2019-11-30 21:19:56,269 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads 2019-11-30 21:19:56,270 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140383347226432)>, <ExcThread(data, started 140383168022272)>, <ExcThread(queue_monitoring, started 140382918653696)>, <ExcThread(validate, started 140383176414976)>, <ExcThread(copytool_in, started 140382415353600)>, <ExcThread(job_monitor, started 140382406960896)>, <ExcThread(copytool_out, started 140382952224512)>, <ExcThread(validate_post, started 140382398568192)>, <ExcThread(validate_pre, started 140382910260992)>, <ExcThread(queue_monitor, started 140382390175488)>, <ExcThread(execute_payloads, started 140382373390080)>, <ExcThread(create_data_payload, started 140382943831808)>] 2019-11-30 21:19:56,442 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished 2019-11-30 21:19:56,721 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished 2019-11-30 21:19:56,758 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished 2019-11-30 21:19:56,778 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished 2019-11-30 21:19:56,897 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished 2019-11-30 21:19:56,927 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-11-30 21:19:56,927 | DEBUG | data | pilot.control.data | control | [data] control thread has finished 2019-11-30 21:19:57,029 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished 2019-11-30 21:19:57,134 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-11-30 21:19:57,134 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished 2019-11-30 21:19:57,148 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished 2019-11-30 21:19:57,275 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads 2019-11-30 21:19:57,275 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140383347226432)>, <ExcThread(queue_monitoring, started 140382918653696)>, <ExcThread(job_monitor, started 140382406960896)>] 2019-11-30 21:19:58,107 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-11-30 21:20:01,108 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished 2019-11-30 21:20:01,284 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads 2019-11-30 21:20:01,284 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140383347226432)>, <ExcThread(job_monitor, started 140382406960896)>] 2019-11-30 21:20:20,141 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s) 2019-11-30 21:20:20,142 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished 2019-11-30 21:20:20,354 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-11-30 21:20:20,354 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-11-30 21:20:20,354 | INFO | MainThread | root | wrap_up | pilot has finished 2019-11-30 21:20:20 UTC [wrapper] ==== pilot stdout END ==== 2019-11-30 21:20:20 UTC [wrapper] ==== wrapper stdout RESUME ==== 2019-11-30 21:20:20 UTC [wrapper] Pilot exit status: 0 2019-11-30 21:20:20 UTC [wrapper] STATUSCODE: 0 2019-11-30 21:20:20 UTC [wrapper] apfmon messages muted ---- find pandaIDs.out ---- total 60 -rw-rw-r--. 1 320 320 11357 Jul 25 14:38 LICENSE -rw-r--r--. 1 320 320 20 Sep 9 11:04 MANIFEST.IN -rw-------. 1 root root 11 Nov 30 14:01 pandaIDs.out drwxrwxr-x. 14 320 320 216 Nov 30 14:01 pilot -rwxr-xr-x. 1 320 320 20591 Oct 21 09:01 pilot.py -rw-r--r--. 1 320 320 7 Oct 22 15:22 PILOTVERSION -rw-rw-r--. 1 320 320 2251 Jul 25 14:38 README.md -rw-r--r--. 1 320 320 766 Oct 10 14:01 setup.py -rw-rw-r--. 1 320 320 221 Jul 25 14:38 TODO.md 2019-11-30 21:20:20 UTC [wrapper] pandaIDs.out files: -rw-------. 1 root root 11 Nov 30 14:01 /home/opc/boinc/slots/1/pilot2/pandaIDs.out 2019-11-30 21:20:20 UTC [wrapper] pandaIDs.out content: 4541346145 2019-11-30 21:20:20 UTC [wrapper] Test setup, not cleaning 2019-11-30 21:20:20 UTC [wrapper] ==== wrapper stdout END ==== 2019-11-30 21:20:20 UTC [wrapper] ==== wrapper stderr END ==== 2019-11-30 21:20:20 UTC [wrapper] wrapper wrapperexiting ec=0, duration=26363 2019-11-30 21:20:20 UTC [wrapper] apfmon messages muted 2019-11-30 21:20:20,637: ***************diag file************ 2019-11-30 21:20:20,637: runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=8 WallTime=26363.47s KernelTime=1066.47s UserTime=202301.39s CPUUsage=771% MaxResidentMemory=1947128kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=18949 MinorPageFaults=28216393 Swaps=0 ForcedSwitches=13062036 WaitSwitches=12764924 Inputs=7199288 Outputs=1065296 SocketReceived=0 SocketSent=0 Signals=0 nodename=NDGF-T1@instance-20190625-1451-9035 exitcode=0 exitcode=0 2019-11-30 21:20:20,643: ******************************WorkDir*********************** 2019-11-30 21:20:20,643: total 219196 drwxrwx--x. 6 root root 4096 Nov 30 21:20 . drwxr-x--x. 4 root root 24 Sep 13 11:46 .. -rw-------. 1 root root 7756352 Nov 30 14:01 agis_ddmendpoints.json -rw-------. 1 root root 3750700 Nov 30 14:01 agis_schedconf.cvmfs.json drwx------. 2 root root 6 Nov 30 14:00 .alrb drwxr-xr-x. 3 root root 17 Nov 30 14:00 APPS -rw-------. 1 root root 543 Nov 30 14:00 .asetup -rw-------. 1 root root 4236 Nov 30 14:01 .asetup.save -rw-r--r--. 1 root root 0 Nov 30 14:00 boinc_lockfile -rw-r--r--. 1 root root 8192 Nov 30 21:20 boinc_mmap_file -rw-r--r--. 1 root root 531 Nov 30 21:03 boinc_task_state.xml -rw-r--r--. 1 root root 209648985 Nov 30 14:00 EVNT.18605811._000294.pool.root.1 -rw-------. 1 root root 66055 Nov 30 21:19 heartbeat.json -rw-r--r--. 1 root root 5930 Nov 30 14:00 init_data.xml -rw-r--r--. 1 root root 268659 Nov 30 14:00 input.tar.gz -rw-r--r--. 1 root root 105 Nov 30 14:00 job.xml -rw-------. 1 root root 1163584 Nov 30 21:20 log.19056367._018135.job.log.1 -rw-------. 1 root root 1350644 Nov 30 21:19 log.19056367._018135.job.log.tgz.1 -rw-------. 1 root root 848 Nov 30 21:19 memory_monitor_summary.json -rw-------. 1 root root 463 Nov 30 21:20 output.list -rw-------. 1 4871 1028 2886 Nov 13 12:39 pandaJobData.out drwxr-xr-x. 3 320 320 229 Nov 30 14:01 pilot2 -rw-r--r--. 1 root root 260992 Nov 13 12:27 pilot2.tar.gz -rw-------. 1 root root 7943 Nov 30 21:20 pilotlog.txt -rw-r--r--. 1 root root 4480 Nov 13 12:36 queuedata.json -rw-r--r--. 1 root root 812 Nov 30 14:00 RTE.tar.gz -rwxr-xr-x. 1 root root 8247 Nov 30 14:00 run_atlas -rwx------. 1 4871 1028 12849 Nov 13 12:39 runpilot2-wrapper.sh -rw-r--r--. 1 root root 692 Nov 30 21:20 runtime_log -rw-r--r--. 1 root root 7075 Nov 30 21:20 runtime_log.err drwxrwx--x. 2 root root 131 Nov 30 21:20 shared -rw-r--r--. 1 root root 14051 Nov 30 14:00 start_atlas.sh -rw-r--r--. 1 root root 27742 Nov 30 21:20 stderr.txt -rw-r--r--. 1 root root 100 Nov 30 14:00 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 root root 29 Nov 30 21:20 wrapper_checkpoint.txt -rw-------. 1 root root 534 Nov 30 21:20 Y6JLDmi66ovnsSi4apGgGQJmABFKDmABFKDmVk2PDmABFKDm7QZ42m.diag 2019-11-30 21:20:20,643: running start_atlas return value is 0 2019-11-30 21:20:20,643: Parent exit 0 2019-11-30 21:20:20,644: child process exit 0 21:20:21 (25493): run_atlas exited; CPU time 202301.905890 21:20:21 (25493): called boinc_finish(0) </stderr_txt> ]]>
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