| Name | Y6JLDmi66ovnsSi4apGgGQJmABFKDmABFKDmVk2PDmABFKDm7QZ42m_1 |
| Workunit | 126435065 |
| Created | 22 Nov 2019, 5:02:33 UTC |
| Sent | 30 Nov 2019, 13:13:41 UTC |
| Report deadline | 8 Dec 2019, 13:13:41 UTC |
| Received | 30 Nov 2019, 21:20:38 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 10611925 |
| Run time | 7 hours 19 min 28 sec |
| CPU time | 2 days 8 hours 11 min 41 sec |
| Validate state | Valid |
| Credit | 2,793.81 |
| Device peak FLOPS | 20.63 GFLOPS |
| Application version | ATLAS Simulation v2.73 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.82 GB |
| Peak swap size | 2.57 GB |
| Peak disk usage | 660.38 MB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:00:54 (25493): wrapper (7.7.26015): starting
14:00:54 (25493): wrapper: running run_atlas (--nthreads 8)
2019-11-30 14:00:54,216: singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img
2019-11-30 14:00:54,216: sys.argv = ['run_atlas', '--nthreads', '8']
2019-11-30 14:00:54,217: THREADS=8
2019-11-30 14:00:54,218: Checking for CVMFS
2019-11-30 14:00:56,225: CVMFS is installed
2019-11-30 14:00:56,225: Checking for singularity binary...
2019-11-30 14:00:56,225: Found singularity at /bin/singularity
2019-11-30 14:00:56,226: Running singularity --version
2019-11-30 14:00:56,261: Singularity version is singularity version 3.2.1-1.1.el7
2019-11-30 14:00:56,261: Testing the function of Singularity...
2019-11-30 14:00:56,261: Checking singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img hostname
2019-11-30 14:00:56,473: Singularity Works...
2019-11-30 14:00:56,474: copy /home/opc/boinc/slots/1/shared/ATLAS.root_0
2019-11-30 14:00:56,771: copy /home/opc/boinc/slots/1/shared/input.tar.gz
2019-11-30 14:00:56,772: copy /home/opc/boinc/slots/1/shared/RTE.tar.gz
2019-11-30 14:00:56,773: copy /home/opc/boinc/slots/1/shared/start_atlas.sh
2019-11-30 14:00:56,773: export ATHENA_PROC_NUMBER=8;
2019-11-30 14:00:56,797: start atlas job with PandaID=4541346145
2019-11-30 14:00:56,797: cmd = singularity exec --pwd /home/opc/boinc/slots/1 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-centos7.img sh start_atlas.sh > runtime_log 2> runtime_log.err
2019-11-30 21:20:20,615: running cmd return value is 0
2019-11-30 21:20:20,616: Moving ./HITS.19056367._018135.pool.root.1 to shared/HITS.pool.root.1
2019-11-30 21:20:20,617: HITS result file:
2019-11-30 21:20:20,626: -rw-------. 1 root root 250092288 Nov 30 21:18 shared/HITS.pool.root.1
2019-11-30 21:20:20,628: **********************Error codes and diagnostics******************
2019-11-30 21:20:20,628: pilotErrorCode : 0
2019-11-30 21:20:20,629: exeErrorCode : 0
2019-11-30 21:20:20,629: pilotErrorDiag :
2019-11-30 21:20:20,629: exeErrorDiag :
2019-11-30 21:20:20,629: *****************The last 200 lines of the pilot log******************
2019-11-30 21:20:20,633: "wallTime": 1
},
"preExe": {
"cpuTime": 1,
"wallTime": 3
},
"total": {
"cpuTime": 111,
"wallTime": 162
},
"validation": {
"cpuTime": 0,
"wallTime": 0
},
"wallTime": 158
}
},
"machine": {
"cpu_family": "23",
"linux_distribution": [
"CentOS Linux",
"7.6.1810",
"Core"
],
"model": "1",
"model_name": "AMD EPYC 7551 32-Core Processor",
"node": "instance-20190625-1451-9035",
"platform": "Linux-3.10.0-957.21.3.el7.x86_64-x86_64-with-centos-7.6.1810-Core"
},
"transform": {
"cpuEfficiency": 0.963,
"cpuPWEfficiency": 0.9671,
"cpuTime": 13,
"cpuTimeTotal": 202536,
"externalCpuTime": 424,
"processedEvents": 200,
"trfPredata": null,
"wallTime": 26221
}
}
}
2019-11-30 21:19:52,103 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | update_server | xml:will send fileinfo
2019-11-30 21:19:52,103 | INFO | queue_monitor | pilot.control.job.4541346145 | send_state | pilot will not update the server (heartbeat message will be written to file)
2019-11-30 21:19:52,104 | INFO | queue_monitor | pilot.control.job.4541346145 | send_state | job 4541346145 has finished - writing final server update
2019-11-30 21:19:52,112 | DEBUG | queue_monitor | pilot.api.analytics | get_fitted_data | removing tails from data to be fitted
2019-11-30 21:19:52,112 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | fitting pss+swap vs Time
2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 13.49 B/s (using 429 data points, chi2=-27191605540.709602)
2019-11-30 21:19:52,113 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_job_metrics | job metrics="coreCount=8 actualCoreCount=1 nEvents=200 workDirSize=47755943 leak=13.49"
2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.control.job.4541346145 | get_data_structure | total number of processed events: 200 (read)
2019-11-30 21:19:52,115 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/memory_monitor_summary.json (trf name=prmon)
2019-11-30 21:19:52,116 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 165022, 'nprocs': 16, 'nthreads': 1, 'rx_bytes': 749429344, 'wtime': 26243, 'rss': 18120948, 'write_bytes': 523059200, 'vmem': 27345164, 'read_bytes': 3383382016, 'stime': 407, 'tx_bytes': 162378596, 'pss': 3431669, 'wchar': 522324875, 'rchar': 5715557095, 'tx_packets': 96697, 'swap': 0, 'utime': 204084}, 'Avg': {'write_bytes': 19930, 'nprocs': 13, 'nthreads': 0, 'rx_bytes': 28556, 'rx_packets': 6, 'vmem': 24035795, 'read_bytes': 128920, 'swap': 0, 'tx_bytes': 6187, 'pss': 3198894, 'wchar': 19902, 'rchar': 217786, 'tx_packets': 3, 'rss': 16417357}}
2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | ..............................
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . Timing measurements:
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . get job = 0 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . initial setup = 2 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload setup = 0 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . total setup = 2 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-in = 1 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload execution = 26285 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-out = 3 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | ..............................
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-11-30 21:19:52,118 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_panda_tracer_log | PanDA tracer log does not exist: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pandatracerlog.txt (ignoring)
2019-11-30 21:19:52,118 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pilotlog.txt
2019-11-30 21:19:52,141 | WARNING | queue_monitor | pilot.util.auxiliary.4541346145 | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 13.49 B/s (using 429 data points, chi2=-27191605540.709602)
2019-11-30 21:19:52,113 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_job_metrics | job metrics="coreCount=8 actualCoreCount=1 nEvents=200 workDirSize=47755943 leak=13.49"
2019-11-30 21:19:52,113 | INFO | queue_monitor | pilot.control.job.4541346145 | get_data_structure | total number of processed events: 200 (read)
2019-11-30 21:19:52,115 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/memory_monitor_summary.json (trf name=prmon)
2019-11-30 21:19:52,116 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'rx_packets': 165022, 'nprocs': 16, 'nthreads': 1, 'rx_bytes': 749429344, 'wtime': 26243, 'rss': 18120948, 'write_bytes': 523059200, 'vmem': 27345164, 'read_bytes': 3383382016, 'stime': 407, 'tx_bytes': 162378596, 'pss': 3431669, 'wchar': 522324875, 'rchar': 5715557095, 'tx_packets': 96697, 'swap': 0, 'utime': 204084}, 'Avg': {'write_bytes': 19930, 'nprocs': 13, 'nthreads': 0, 'rx_bytes': 28556, 'rx_packets': 6, 'vmem': 24035795, 'read_bytes': 128920, 'swap': 0, 'tx_bytes': 6187, 'pss': 3198894, 'wchar': 19902, 'rchar': 217786, 'tx_packets': 3, 'rss': 16417357}}
2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from prmon json
2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from prmon json
2019-11-30 21:19:52,116 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | ..............................
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . Timing measurements:
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . get job = 0 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . initial setup = 2 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload setup = 0 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . total setup = 2 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-in = 1 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . payload execution = 26285 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | . stage-out = 3 s
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | timing_report | ..............................
2019-11-30 21:19:52,117 | INFO | queue_monitor | pilot.util.auxiliary.4541346145 | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-11-30 21:19:52,118 | DEBUG | queue_monitor | pilot.util.auxiliary.4541346145 | get_panda_tracer_log | PanDA tracer log does not exist: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pandatracerlog.txt (ignoring)
2019-11-30 21:19:52,118 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/opc/boinc/slots/1/PanDA_Pilot-4541346145/pilotlog.txt
2019-11-30 21:19:52,142 | DEBUG | queue_monitor | pilot.control.job.4541346145 | send_state | wrote heartbeat to file /home/opc/boinc/slots/1/heartbeat.json
2019-11-30 21:19:52,143 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4541346145 was dequeued from the monitored payloads queue
2019-11-30 21:19:53,168 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report |
2019-11-30 21:19:53,168 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | job summary report
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | --------------------------------------------------
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | PanDA job id: 4541346145
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | task id: 19056367
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | errors: (none)
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | status: LOG_TRANSFER = DONE
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | pilot state: finished
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | transexitcode: 0
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exeerrorcode: 0
2019-11-30 21:19:53,169 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exeerrordiag:
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exitcode: 0
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | exitmsg: OK
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | cpuconsumptiontime: 202902 s
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | nevents: 200
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | neventsw: 0
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | pid: 32382
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | pgrp: 32382
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | corecount: 8
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | event service: False
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report | --------------------------------------------------
2019-11-30 21:19:53,170 | INFO | retrieve | pilot.util.auxiliary.4541346145 | make_job_report |
2019-11-30 21:19:53,171 | INFO | retrieve | pilot.control.job.4541346145 | has_job_completed | job 4541346145 has completed
2019-11-30 21:19:53,171 | INFO | retrieve | pilot.util.processes | cleanup | overall cleanup function is called
2019-11-30 21:19:53,180 | DEBUG | retrieve | pilot.util.processes | cleanup | work directory was removed: /home/opc/boinc/slots/1/PanDA_Pilot-4541346145
2019-11-30 21:19:54,185 | INFO | retrieve | pilot.info.jobdata | collect_zombies | --- collectZombieJob: --- 10, [32382]
2019-11-30 21:19:54,185 | INFO | retrieve | pilot.info.jobdata | collect_zombies | zombie collector trying to kill pid 32382
2019-11-30 21:19:54,185 | INFO | retrieve | pilot.info.jobdata | collect_zombies | harmless exception when collecting zombies: [Errno 10] No child processes
2019-11-30 21:19:55,189 | INFO | retrieve | pilot.util.processes | cleanup | collected zombie processes
2019-11-30 21:19:55,189 | INFO | retrieve | pilot.util.processes | cleanup | will now attempt to kill all subprocesses of pid=32382
2019-11-30 21:19:55,239 | INFO | retrieve | pilot.util.processes | kill_processes | process IDs to be killed: [32382] (in reverse order)
2019-11-30 21:19:55,288 | WARNING | retrieve | pilot.util.processes | kill_processes | found no corresponding commands to process id(s)
2019-11-30 21:19:55,289 | INFO | retrieve | pilot.util.processes | kill_orphans | Do not look for orphan processes in BOINC jobs
2019-11-30 21:19:55,289 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-11-30 21:19:55,289 | INFO | retrieve | root | retrieve | pilot has finished for previous job - re-establishing logging
No handlers could be found for logger "pilot.util.mpi"
2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************
2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | *** PanDA Pilot version 2.2.2 (1) ***
2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************
2019-11-30 21:19:55,292 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner |
2019-11-30 21:19:55,293 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | pilot is running in a VM
2019-11-30 21:19:55,293 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info | architecture information:
2019-11-30 21:19:55,356 | INFO | retrieve | pilot.util.auxiliary | display_architecture_info |
LSB Version: :core-4.1-amd64:core-4.1-noarch
Distributor ID: CentOS
Description: CentOS Linux release 7.6.1810 (Core)
Release: 7.6.1810
Codename: Core
2019-11-30 21:19:55,357 | INFO | retrieve | pilot.util.auxiliary | pilot_version_banner | ***************************************
2019-11-30 21:19:55,859 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/opc/boinc/slots/1
2019-11-30 21:19:55,882 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (33860616192 B)
2019-11-30 21:19:55,882 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-11-30 21:19:55,882 | DEBUG | retrieve | pilot.control.job | retrieve | [job] retrieve thread has finished
2019-11-30 21:19:55,892 | INFO | monitor | pilot.control.monitor | control | [monitor] control thread has ended
2019-11-30 21:19:55,897 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-11-30 21:19:56,020 | INFO | failed_post | pilot.control.payload | failed_post | [payload] failed_post thread has finished
2019-11-30 21:19:56,029 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-11-30 21:19:56,029 | DEBUG | job | pilot.control.job | control | [job] control thread has finished
2019-11-30 21:19:56,123 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-11-30 21:19:56,123 | DEBUG | payload | pilot.control.payload | control | [payload] control thread has finished
2019-11-30 21:19:56,269 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 12 threads
2019-11-30 21:19:56,270 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140383347226432)>, <ExcThread(data, started 140383168022272)>, <ExcThread(queue_monitoring, started 140382918653696)>, <ExcThread(validate, started 140383176414976)>, <ExcThread(copytool_in, started 140382415353600)>, <ExcThread(job_monitor, started 140382406960896)>, <ExcThread(copytool_out, started 140382952224512)>, <ExcThread(validate_post, started 140382398568192)>, <ExcThread(validate_pre, started 140382910260992)>, <ExcThread(queue_monitor, started 140382390175488)>, <ExcThread(execute_payloads, started 140382373390080)>, <ExcThread(create_data_payload, started 140382943831808)>]
2019-11-30 21:19:56,442 | DEBUG | create_data_payload | pilot.control.job | create_data_payload | [job] create_data_payload thread has finished
2019-11-30 21:19:56,721 | INFO | execute_payloads | pilot.control.payload | execute_payloads | [payload] execute_payloads thread has finished
2019-11-30 21:19:56,758 | DEBUG | validate | pilot.control.job | validate | [job] validate thread has finished
2019-11-30 21:19:56,778 | DEBUG | copytool_in | pilot.control.data | copytool_in | [data] copytool_in thread has finished
2019-11-30 21:19:56,897 | DEBUG | copytool_out | pilot.control.data | copytool_out | [data] copytool_out thread has finished
2019-11-30 21:19:56,927 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-11-30 21:19:56,927 | DEBUG | data | pilot.control.data | control | [data] control thread has finished
2019-11-30 21:19:57,029 | INFO | validate_pre | pilot.control.payload | validate_pre | [payload] validate_pre thread has finished
2019-11-30 21:19:57,134 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-11-30 21:19:57,134 | DEBUG | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor thread has finished
2019-11-30 21:19:57,148 | INFO | validate_post | pilot.control.payload | validate_post | [payload] validate_post thread has finished
2019-11-30 21:19:57,275 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 3 threads
2019-11-30 21:19:57,275 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140383347226432)>, <ExcThread(queue_monitoring, started 140382918653696)>, <ExcThread(job_monitor, started 140382406960896)>]
2019-11-30 21:19:58,107 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-11-30 21:20:01,108 | DEBUG | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue_monitor thread has finished
2019-11-30 21:20:01,284 | DEBUG | MainThread | pilot.workflow.generic | run | thread count now at 2 threads
2019-11-30 21:20:01,284 | DEBUG | MainThread | pilot.workflow.generic | run | enumerate: [<_MainThread(MainThread, started 140383347226432)>, <ExcThread(job_monitor, started 140382406960896)>]
2019-11-30 21:20:20,141 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 72 s)
2019-11-30 21:20:20,142 | DEBUG | job_monitor | pilot.control.job | job_monitor | [job] job monitor thread has finished
2019-11-30 21:20:20,354 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-11-30 21:20:20,354 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-11-30 21:20:20,354 | INFO | MainThread | root | wrap_up | pilot has finished
2019-11-30 21:20:20 UTC [wrapper] ==== pilot stdout END ====
2019-11-30 21:20:20 UTC [wrapper] ==== wrapper stdout RESUME ====
2019-11-30 21:20:20 UTC [wrapper] Pilot exit status: 0
2019-11-30 21:20:20 UTC [wrapper] STATUSCODE: 0
2019-11-30 21:20:20 UTC [wrapper] apfmon messages muted
---- find pandaIDs.out ----
total 60
-rw-rw-r--. 1 320 320 11357 Jul 25 14:38 LICENSE
-rw-r--r--. 1 320 320 20 Sep 9 11:04 MANIFEST.IN
-rw-------. 1 root root 11 Nov 30 14:01 pandaIDs.out
drwxrwxr-x. 14 320 320 216 Nov 30 14:01 pilot
-rwxr-xr-x. 1 320 320 20591 Oct 21 09:01 pilot.py
-rw-r--r--. 1 320 320 7 Oct 22 15:22 PILOTVERSION
-rw-rw-r--. 1 320 320 2251 Jul 25 14:38 README.md
-rw-r--r--. 1 320 320 766 Oct 10 14:01 setup.py
-rw-rw-r--. 1 320 320 221 Jul 25 14:38 TODO.md
2019-11-30 21:20:20 UTC [wrapper] pandaIDs.out files:
-rw-------. 1 root root 11 Nov 30 14:01 /home/opc/boinc/slots/1/pilot2/pandaIDs.out
2019-11-30 21:20:20 UTC [wrapper] pandaIDs.out content:
4541346145
2019-11-30 21:20:20 UTC [wrapper] Test setup, not cleaning
2019-11-30 21:20:20 UTC [wrapper] ==== wrapper stdout END ====
2019-11-30 21:20:20 UTC [wrapper] ==== wrapper stderr END ====
2019-11-30 21:20:20 UTC [wrapper] wrapper wrapperexiting ec=0, duration=26363
2019-11-30 21:20:20 UTC [wrapper] apfmon messages muted
2019-11-30 21:20:20,637: ***************diag file************
2019-11-30 21:20:20,637: runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=8
WallTime=26363.47s
KernelTime=1066.47s
UserTime=202301.39s
CPUUsage=771%
MaxResidentMemory=1947128kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=18949
MinorPageFaults=28216393
Swaps=0
ForcedSwitches=13062036
WaitSwitches=12764924
Inputs=7199288
Outputs=1065296
SocketReceived=0
SocketSent=0
Signals=0
nodename=NDGF-T1@instance-20190625-1451-9035
exitcode=0
exitcode=0
2019-11-30 21:20:20,643: ******************************WorkDir***********************
2019-11-30 21:20:20,643: total 219196
drwxrwx--x. 6 root root 4096 Nov 30 21:20 .
drwxr-x--x. 4 root root 24 Sep 13 11:46 ..
-rw-------. 1 root root 7756352 Nov 30 14:01 agis_ddmendpoints.json
-rw-------. 1 root root 3750700 Nov 30 14:01 agis_schedconf.cvmfs.json
drwx------. 2 root root 6 Nov 30 14:00 .alrb
drwxr-xr-x. 3 root root 17 Nov 30 14:00 APPS
-rw-------. 1 root root 543 Nov 30 14:00 .asetup
-rw-------. 1 root root 4236 Nov 30 14:01 .asetup.save
-rw-r--r--. 1 root root 0 Nov 30 14:00 boinc_lockfile
-rw-r--r--. 1 root root 8192 Nov 30 21:20 boinc_mmap_file
-rw-r--r--. 1 root root 531 Nov 30 21:03 boinc_task_state.xml
-rw-r--r--. 1 root root 209648985 Nov 30 14:00 EVNT.18605811._000294.pool.root.1
-rw-------. 1 root root 66055 Nov 30 21:19 heartbeat.json
-rw-r--r--. 1 root root 5930 Nov 30 14:00 init_data.xml
-rw-r--r--. 1 root root 268659 Nov 30 14:00 input.tar.gz
-rw-r--r--. 1 root root 105 Nov 30 14:00 job.xml
-rw-------. 1 root root 1163584 Nov 30 21:20 log.19056367._018135.job.log.1
-rw-------. 1 root root 1350644 Nov 30 21:19 log.19056367._018135.job.log.tgz.1
-rw-------. 1 root root 848 Nov 30 21:19 memory_monitor_summary.json
-rw-------. 1 root root 463 Nov 30 21:20 output.list
-rw-------. 1 4871 1028 2886 Nov 13 12:39 pandaJobData.out
drwxr-xr-x. 3 320 320 229 Nov 30 14:01 pilot2
-rw-r--r--. 1 root root 260992 Nov 13 12:27 pilot2.tar.gz
-rw-------. 1 root root 7943 Nov 30 21:20 pilotlog.txt
-rw-r--r--. 1 root root 4480 Nov 13 12:36 queuedata.json
-rw-r--r--. 1 root root 812 Nov 30 14:00 RTE.tar.gz
-rwxr-xr-x. 1 root root 8247 Nov 30 14:00 run_atlas
-rwx------. 1 4871 1028 12849 Nov 13 12:39 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 Nov 30 21:20 runtime_log
-rw-r--r--. 1 root root 7075 Nov 30 21:20 runtime_log.err
drwxrwx--x. 2 root root 131 Nov 30 21:20 shared
-rw-r--r--. 1 root root 14051 Nov 30 14:00 start_atlas.sh
-rw-r--r--. 1 root root 27742 Nov 30 21:20 stderr.txt
-rw-r--r--. 1 root root 100 Nov 30 14:00 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 29 Nov 30 21:20 wrapper_checkpoint.txt
-rw-------. 1 root root 534 Nov 30 21:20 Y6JLDmi66ovnsSi4apGgGQJmABFKDmABFKDmVk2PDmABFKDm7QZ42m.diag
2019-11-30 21:20:20,643: running start_atlas return value is 0
2019-11-30 21:20:20,643: Parent exit 0
2019-11-30 21:20:20,644: child process exit 0
21:20:21 (25493): run_atlas exited; CPU time 202301.905890
21:20:21 (25493): called boinc_finish(0)
</stderr_txt>
]]>
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