Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
20:14:03 (26386): wrapper (7.7.26015): starting
20:14:03 (26386): wrapper: running run_atlas (--nthreads 8)
singularity image is /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '8']
THREADS=8
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.8 (Carbon)

This is SLC or CentOS release 6, run the atlas job without Singularity
copy /opt/boinc/slots/0/shared/RTE.tar.gz
copy /opt/boinc/slots/0/shared/input.tar.gz
copy /opt/boinc/slots/0/shared/ATLAS.root_0
copy /opt/boinc/slots/0/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=8;start atlas job with PandaID=4214551247
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0

***********************log_extracts.txt*************************
- Last 10 lines from /opt/boinc/slots/0/Panda_Pilot_26778_1547838846/PandaJob/athena_stdout.txt -
Error: unable to find V00-08-04 version for asetup

- Walltime -
JobRetrival=0, StageIn=8, Execution=12, StageOut=0, CleanUp=11

***********************pilot_error_report.json*********************
{
    "4214551247": {
        "2": [
            {
                "pilotErrorCode": 0,
                "pilotErrorDiag": "Job failed: Non-zero failed job return code: 1"
            }
        ]
    }
}
*****************The last 100 lines of the pilot log******************
    "siteid": "BOINC_MCORE", 
    "sitershare": null, 
    "space": 0, 
    "special_par": null, 
    "stageinretry": 2, 
    "stageoutretry": 2, 
    "status": "brokeroff", 
    "statusoverride": "offline", 
    "sysconfig": "manual", 
    "system": "arc", 
    "tags": "arc", 
    "tier": "T3", 
    "timefloor": 0, 
    "tmpdir": null, 
    "transferringlimit": 20000, 
    "tspace": "2070-01-01T00:00:00", 
    "use_newmover": "True", 
    "validatedreleases": "True", 
    "version": null, 
    "wansinklimit": null, 
    "wansourcelimit": null, 
    "wnconnectivity": "full", 
    "wntmpdir": null, 
    "workflow": null
}

2019-01-18 19:14:06|26778|SiteInformat| Queuedata was successfully downloaded by pilot wrapper script
2019-01-18 19:14:06|26778|ATLASSiteInf| curl command returned valid queuedata
2019-01-18 19:14:06|26778|ATLASSiteInf| Site BOINC_MCORE is currently in brokeroff mode
2019-01-18 19:14:06|26778|ATLASSiteInf| Job recovery turned off
2019-01-18 19:14:06|26778|ATLASSiteInf| Confirmed correctly formatted rucio sepath
2019-01-18 19:14:06|26778|ATLASSiteInf| Confirmed correctly formatted rucio seprodpath
2019-01-18 19:14:06|26778|SiteInformat| Evaluating queuedata
2019-01-18 19:14:06|26778|SiteInformat| Setting unset pilot variables using queuedata
2019-01-18 19:14:06|26778|SiteInformat| appdir: 
2019-01-18 19:14:06|26778|pUtil.py    | File registration will be done by server
2019-01-18 19:14:06|26778|pUtil.py    | Updated stage-in retry number to 2
2019-01-18 19:14:06|26778|pUtil.py    | Updated stage-out retry number to 2
2019-01-18 19:14:06|26778|pUtil.py    | Detected unset (NULL) release/homepackage string
2019-01-18 19:14:06|26778|ATLASExperim| Application dir confirmed: /opt/boinc/slots/0/
2019-01-18 19:14:06|26778|pilot.py    | Pilot will serve experiment: Nordugrid-ATLAS
2019-01-18 19:14:06|26778|ATLASExperim| Architecture information:
2019-01-18 19:14:06|26778|ATLASExperim| Excuting command: lsb_release -a
2019-01-18 19:14:06|26778|ATLASExperim| 
LSB Version:	:base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch
Distributor ID:	Scientific
Description:	Scientific Linux release 6.8 (Carbon)
Release:	6.8
Codename:	Carbon
2019-01-18 19:14:06|26778|pUtil.py    | getSiteInformation: got experiment=ATLAS
2019-01-18 19:14:06|26778|ATLASExperim| appdirs = ['/cvmfs/atlas.cern.ch/repo/sw']
2019-01-18 19:14:06|26778|ATLASExperim| head of /cvmfs/atlas.cern.ch/repo/sw/ChangeLog: 
--------------------------------------------------------------------------------
2019-01-18 20:01:16 Alessandro De Salvo
  * + GroupData 201901182001

2019-01-18 20:00:43 Alessandro De Salvo
	* + AGISData 20190118200043

2019-01-18 19:01:00 Alessandro De Salvo
	* + AGISData 20190118190100

2019-01-18 18:03:42 Alessandro De Salvo
--------------------------------------------------------------------------------
2019-01-18 19:14:06|26778|ATLASExperim| ATLAS_PYTHON_PILOT set to /usr/bin/python
2019-01-18 19:14:06|26778|pUtil.py    | getSiteInformation: got experiment=ATLAS
2019-01-18 19:14:06|26778|ATLASExperim| Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (time-out: 300)
2019-01-18 19:14:06|26778|pUtil.py    | Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (protected by timed_command, timeout: 300 s)
2019-01-18 19:14:06|26778|pUtil.py    | Elapsed time: 0
2019-01-18 19:14:06|26778|ATLASExperim| Diagnostics tool has verified CVMFS
2019-01-18 19:14:06|26778|Node.py     | Collecting machine features
2019-01-18 19:14:06|26778|Node.py     | $MACHINEFEATURES not defined locally
2019-01-18 19:14:06|26778|Node.py     | $JOBFEATURES not defined locally
2019-01-18 19:14:06|26778|Node.py     | Executing command: hostname -i
2019-01-18 19:14:06|26778|Node.py     | IP number of worker node: 193.206.153.8
2019-01-18 19:14:06|26778|pUtil.py    | getSiteInformation: got experiment=Nordugrid-ATLAS
2019-01-18 19:14:06|26778|pilot.py    | Using site information for experiment: Nordugrid-ATLAS
2019-01-18 19:14:06|26778|pilot.py    | Will attempt to create workdir: /opt/boinc/slots/0/Panda_Pilot_26778_1547838846
2019-01-18 19:14:06|26778|pilot.py    | Creating file: /opt/boinc/slots/0/CURRENT_SITEWORKDIR
2019-01-18 19:14:06|26778|pUtil.py    | Wrote string "/opt/boinc/slots/0/Panda_Pilot_26778_1547838846" to file: /opt/boinc/slots/0/CURRENT_SITEWORKDIR
2019-01-18 19:14:06|26778|ATLASExperim| ATLAS_POOLCOND_PATH = /cvmfs/atlas-condb.cern.ch/repo/conditions
2019-01-18 19:14:06|26778|pilot.py    | Preparing to execute Cleaner
2019-01-18 19:14:06|26778|pilot.py    | Cleaning /opt/boinc/slots/0
2019-01-18 19:14:06|26778|Cleaner.py  | Cleaner initialized with clean-up limit: 2 hours
2019-01-18 19:14:06|26778|Cleaner.py  | Cleaner will scan for lost directories in verified path: /opt/boinc/slots/0
2019-01-18 19:14:06|26778|Cleaner.py  | Executing empty dirs clean-up, stage 1/5
2019-01-18 19:14:06|26778|Cleaner.py  | Purged 0 empty directories
2019-01-18 19:14:06|26778|Cleaner.py  | Executing work dir clean-up, stage 2/5
2019-01-18 19:14:06|26778|Cleaner.py  | Purged 0 single workDirs directories
2019-01-18 19:14:06|26778|Cleaner.py  | Executing maxed-out dirs clean-up, stage 3/5
2019-01-18 19:14:06|26778|Cleaner.py  | Purged 0 empty directories
2019-01-18 19:14:06|26778|Cleaner.py  | Executing AthenaMP clean-up, stage 4/5 <SKIPPED>
2019-01-18 19:14:06|26778|Cleaner.py  | Executing PanDA Pilot dir clean-up, stage 5/5
2019-01-18 19:14:06|26778|Cleaner.py  | Number of found job state files: 0
2019-01-18 19:14:06|26778|Cleaner.py  | No job state files were found, aborting clean-up
2019-01-18 19:14:06|26778|pilot.py    | Update frequencies:
2019-01-18 19:14:06|26778|pilot.py    | ...Processes: 300 s
2019-01-18 19:14:06|26778|pilot.py    | .......Space: 600 s
2019-01-18 19:14:06|26778|pilot.py    | ......Server: 1800 s
2019-01-18 19:14:06|26778|pUtil.py    | Timefloor set to zero in queuedata (multi-jobs disabled)
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=160.66s
KernelTime=2.12s
UserTime=22.50s
CPUUsage=15%
MaxResidentMemory=140376kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=0
MinorPageFaults=657638
Swaps=0
ForcedSwitches=3974
WaitSwitches=10307
Inputs=27960
Outputs=45304
SocketReceived=0
SocketSent=0
Signals=0

nodename=gorinie@lx34.le.infn.it
exitcode=0
******************************WorkDir***********************
total 427616
drwxrwx--x 5 root root      4096 Jan 18 20:16 .
drwxrwx--x 5 root root      4096 Jul  2  2018 ..
-rw------- 1 root root       538 Jan 18 20:14 .asetup
drwx------ 3 root root      4096 Jan 18 20:14 .pki
drwxr-xr-x 3 root root      4096 Jan 18 20:14 APPS
-rwx------ 1 4871 1028      2441 Jan 18 10:39 ARCpilot
-rw------- 1 root root        47 Jan 18 20:14 CURRENT_SITEWORKDIR
-rw-r--r-- 1 root root 423874258 Jan 18 20:14 EVNT.16513505._001464.pool.root.1
-rw------- 1 root root        18 Jan 18 20:14 PILOT_INITDIR
-rw-r--r-- 1 root root       606 Jan 18 20:14 RTE.tar.gz
-rw------- 1 root root        19 Jan 18 20:14 START_TIME_4214551247
-rw------- 1 root root         1 Jan 18 20:14 STATUSCODE
-rw------- 1 root root   7117657 Jan 18 20:14 agis_ddmendpoints.cvmfs.json
-rw------- 1 root root   5414879 Jan 18 20:14 agis_schedconf.cvmfs.json
-rw-r--r-- 1 root root         0 Jan 18 20:14 boinc_lockfile
-rw-r--r-- 1 root root      8192 Jan 18 20:16 boinc_mmap_file
-rw-r--r-- 1 root root       523 Jan 18 20:15 boinc_task_state.xml
-rw-r--r-- 1 root root      5910 Jan 18 20:14 init_data.xml
-rw-r--r-- 1 root root   1088717 Jan 18 20:14 input.tar.gz
-rw-r--r-- 1 root root       105 Jan 18 20:14 job.xml
-rw------- 1 root root      1232 Jan 18 20:16 jobSmallFiles.tgz
-rw------- 1 root root    144096 Jan 18 20:16 log.16589990._067546.job.log.1
-rw------- 1 root root     18856 Jan 18 20:15 log.16589990._067546.job.log.tgz.1
-rw------- 1 root root       226 Jan 18 20:15 log_extracts.txt
-rw------- 1 root root       598 Jan 18 20:16 metadata-surl.xml
-rw------- 1 root root       241 Jan 18 20:15 output.list
-rw------- 1 root root        11 Jan 18 20:14 pandaIDs.out
-rw------- 1 root root      2920 Jan 18 20:14 pandaJobData.out
-rw------- 1 root root      2920 Jan 18 20:14 pandaJobData_1.out
-rw------- 1 root root      1821 Jan 18 20:15 panda_node_struct.pickle
-rw------- 1 root root       202 Jan 18 20:14 pilot_error_report.json
-rw------- 1 root root       139 Jan 18 20:16 pilotlog-last.txt
-rw------- 1 root root     11612 Jan 18 20:14 pilotlog.txt
-rw------- 1 root root      3801 Jan 18 20:14 queuedata.json
-rw-r--r-- 1 root root      4436 Jan 18 10:36 queuedata.pilot.json
-rwxr-xr-x 1 root root      8356 Jan 18 20:14 run_atlas
-rw-r--r-- 1 root root       604 Jan 18 20:16 runtime_log
-rw-r--r-- 1 root root     10087 Jan 18 20:16 runtime_log.err
drwxrwx--x 2 root root      4096 Jan 18 20:16 shared
-rw------- 1 root root       483 Jan 18 20:16 smNKDm8nf4tnlyackoJh5iwnABFKDmABFKDmkUIaDmABFKDmQ1FMEo.diag
-rw-r--r-- 1 root root     14363 Jan 18 20:14 start_atlas.sh
-rw-r--r-- 1 root root      8030 Jan 18 20:16 stderr.txt
-rw------- 1 root root        46 Jan 18 20:15 workdir_size-4214551247.json
-rw-r--r-- 1 root root       100 Jan 18 20:14 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 root root        23 Jan 18 20:16 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
20:16:46 (26386): run_atlas exited; CPU time 22.806532
20:16:46 (26386): called boinc_finish(0)

</stderr_txt>
]]>

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