Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:00:36 (8977): wrapper (7.7.26015): starting
03:00:36 (8977): wrapper: running run_atlas (--nthreads 8)
singularity image is /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '8']
THREADS=8
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.8 (Carbon)

This is SLC or CentOS release 6, run the atlas job without Singularity
copy /opt/boinc/slots/1/shared/RTE.tar.gz
copy /opt/boinc/slots/1/shared/input.tar.gz
copy /opt/boinc/slots/1/shared/ATLAS.root_0
copy /opt/boinc/slots/1/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=8;start atlas job with 
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0

***********************log_extracts.txt*************************
- Last 10 lines from /opt/boinc/slots/1/Panda_Pilot_12777_1547776852/PandaJob/athena_stdout.txt -
Error: unable to find V00-08-04 version for asetup

- Walltime -
JobRetrival=1, StageIn=8, Execution=12, StageOut=0, CleanUp=13

***********************pilot_error_report.json*********************
{
    "4214167768": {
        "2": [
            {
                "pilotErrorCode": 0,
                "pilotErrorDiag": "Job failed: Non-zero failed job return code: 1"
            }
        ]
    }
}
*****************The last 100 lines of the pilot log******************
    "siteid": "BOINC_MCORE", 
    "sitershare": null, 
    "space": 0, 
    "special_par": null, 
    "stageinretry": 2, 
    "stageoutretry": 2, 
    "status": "brokeroff", 
    "statusoverride": "offline", 
    "sysconfig": "manual", 
    "system": "arc", 
    "tags": "arc", 
    "tier": "T3", 
    "timefloor": 0, 
    "tmpdir": null, 
    "transferringlimit": 20000, 
    "tspace": "2070-01-01T00:00:00", 
    "use_newmover": "True", 
    "validatedreleases": "True", 
    "version": null, 
    "wansinklimit": null, 
    "wansourcelimit": null, 
    "wnconnectivity": "full", 
    "wntmpdir": null, 
    "workflow": null
}

2019-01-18 02:00:52|12777|SiteInformat| Queuedata was successfully downloaded by pilot wrapper script
2019-01-18 02:00:52|12777|ATLASSiteInf| curl command returned valid queuedata
2019-01-18 02:00:52|12777|ATLASSiteInf| Site BOINC_MCORE is currently in brokeroff mode
2019-01-18 02:00:52|12777|ATLASSiteInf| Job recovery turned off
2019-01-18 02:00:52|12777|ATLASSiteInf| Confirmed correctly formatted rucio sepath
2019-01-18 02:00:52|12777|ATLASSiteInf| Confirmed correctly formatted rucio seprodpath
2019-01-18 02:00:52|12777|SiteInformat| Evaluating queuedata
2019-01-18 02:00:52|12777|SiteInformat| Setting unset pilot variables using queuedata
2019-01-18 02:00:52|12777|SiteInformat| appdir: 
2019-01-18 02:00:52|12777|pUtil.py    | File registration will be done by server
2019-01-18 02:00:52|12777|pUtil.py    | Updated stage-in retry number to 2
2019-01-18 02:00:52|12777|pUtil.py    | Updated stage-out retry number to 2
2019-01-18 02:00:52|12777|pUtil.py    | Detected unset (NULL) release/homepackage string
2019-01-18 02:00:52|12777|ATLASExperim| Application dir confirmed: /opt/boinc/slots/1/
2019-01-18 02:00:52|12777|pilot.py    | Pilot will serve experiment: Nordugrid-ATLAS
2019-01-18 02:00:52|12777|ATLASExperim| Architecture information:
2019-01-18 02:00:52|12777|ATLASExperim| Excuting command: lsb_release -a
2019-01-18 02:00:52|12777|ATLASExperim| 
LSB Version:	:base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch
Distributor ID:	Scientific
Description:	Scientific Linux release 6.8 (Carbon)
Release:	6.8
Codename:	Carbon
2019-01-18 02:00:52|12777|pUtil.py    | getSiteInformation: got experiment=ATLAS
2019-01-18 02:00:52|12777|ATLASExperim| appdirs = ['/cvmfs/atlas.cern.ch/repo/sw']
2019-01-18 02:00:52|12777|ATLASExperim| head of /cvmfs/atlas.cern.ch/repo/sw/ChangeLog: 
--------------------------------------------------------------------------------
2019-01-18 02:00:50 Alessandro De Salvo
	* + AGISData 20190118020050

2019-01-18 01:00:50 Alessandro De Salvo
	* + AGISData 20190118010050

2019-01-18 00:01:37 Alessandro De Salvo
	* + AGISData 20190118000137

2019-01-18 00:00:25 Alessandro De Salvo
--------------------------------------------------------------------------------
2019-01-18 02:00:53|12777|ATLASExperim| ATLAS_PYTHON_PILOT set to /usr/bin/python
2019-01-18 02:00:53|12777|pUtil.py    | getSiteInformation: got experiment=ATLAS
2019-01-18 02:00:53|12777|ATLASExperim| Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (time-out: 300)
2019-01-18 02:00:53|12777|pUtil.py    | Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (protected by timed_command, timeout: 300 s)
2019-01-18 02:00:53|12777|pUtil.py    | Elapsed time: 0
2019-01-18 02:00:53|12777|ATLASExperim| Diagnostics tool has verified CVMFS
2019-01-18 02:00:53|12777|Node.py     | Collecting machine features
2019-01-18 02:00:53|12777|Node.py     | $MACHINEFEATURES not defined locally
2019-01-18 02:00:53|12777|Node.py     | $JOBFEATURES not defined locally
2019-01-18 02:00:53|12777|Node.py     | Executing command: hostname -i
2019-01-18 02:00:53|12777|Node.py     | IP number of worker node: 193.206.153.8
2019-01-18 02:00:53|12777|pUtil.py    | getSiteInformation: got experiment=Nordugrid-ATLAS
2019-01-18 02:00:53|12777|pilot.py    | Using site information for experiment: Nordugrid-ATLAS
2019-01-18 02:00:53|12777|pilot.py    | Will attempt to create workdir: /opt/boinc/slots/1/Panda_Pilot_12777_1547776852
2019-01-18 02:00:53|12777|pilot.py    | Creating file: /opt/boinc/slots/1/CURRENT_SITEWORKDIR
2019-01-18 02:00:53|12777|pUtil.py    | Wrote string "/opt/boinc/slots/1/Panda_Pilot_12777_1547776852" to file: /opt/boinc/slots/1/CURRENT_SITEWORKDIR
2019-01-18 02:00:53|12777|ATLASExperim| ATLAS_POOLCOND_PATH = /cvmfs/atlas.cern.ch/repo/conditions
2019-01-18 02:00:53|12777|pilot.py    | Preparing to execute Cleaner
2019-01-18 02:00:53|12777|pilot.py    | Cleaning /opt/boinc/slots/1
2019-01-18 02:00:53|12777|Cleaner.py  | Cleaner initialized with clean-up limit: 2 hours
2019-01-18 02:00:53|12777|Cleaner.py  | Cleaner will scan for lost directories in verified path: /opt/boinc/slots/1
2019-01-18 02:00:53|12777|Cleaner.py  | Executing empty dirs clean-up, stage 1/5
2019-01-18 02:00:53|12777|Cleaner.py  | Purged 0 empty directories
2019-01-18 02:00:53|12777|Cleaner.py  | Executing work dir clean-up, stage 2/5
2019-01-18 02:00:53|12777|Cleaner.py  | Purged 0 single workDirs directories
2019-01-18 02:00:53|12777|Cleaner.py  | Executing maxed-out dirs clean-up, stage 3/5
2019-01-18 02:00:53|12777|Cleaner.py  | Purged 0 empty directories
2019-01-18 02:00:53|12777|Cleaner.py  | Executing AthenaMP clean-up, stage 4/5 <SKIPPED>
2019-01-18 02:00:53|12777|Cleaner.py  | Executing PanDA Pilot dir clean-up, stage 5/5
2019-01-18 02:00:53|12777|Cleaner.py  | Number of found job state files: 0
2019-01-18 02:00:53|12777|Cleaner.py  | No job state files were found, aborting clean-up
2019-01-18 02:00:53|12777|pilot.py    | Update frequencies:
2019-01-18 02:00:53|12777|pilot.py    | ...Processes: 300 s
2019-01-18 02:00:53|12777|pilot.py    | .......Space: 600 s
2019-01-18 02:00:53|12777|pilot.py    | ......Server: 1800 s
2019-01-18 02:00:53|12777|pUtil.py    | Timefloor set to zero in queuedata (multi-jobs disabled)
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=179.75s
KernelTime=4.35s
UserTime=34.92s
CPUUsage=21%
MaxResidentMemory=148232kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=4
MinorPageFaults=1380794
Swaps=0
ForcedSwitches=7559
WaitSwitches=29410
Inputs=81456
Outputs=46216
SocketReceived=0
SocketSent=0
Signals=0

nodename=gorinie@lx34.le.infn.it
exitcode=0
******************************WorkDir***********************
total 441348
drwxrwx--x 6 root root      4096 Jan 18 03:03 .
drwxrwx--x 5 root root      4096 Jul  2  2018 ..
-rw------- 1 root root       538 Jan 18 03:00 .asetup
drwx------ 3 root root      4096 Jan 18 03:01 .pki
drwxr-xr-x 3 root root      4096 Jan 18 03:00 APPS
-rw------- 1 root root        47 Jan 18 03:00 CURRENT_SITEWORKDIR
-rw-r--r-- 1 root root 436815568 Jan 18 03:00 EVNT.16513522._000964.pool.root.1
lrwxrwxrwx 1 root root        18 Jan 18 03:00 PILOTVERSION -> pilot/PILOTVERSION
-rw------- 1 root root        18 Jan 18 03:00 PILOT_INITDIR
-rw-r--r-- 1 root root       606 Jan 18 03:00 RTE.tar.gz
lrwxrwxrwx 1 root root        15 Jan 18 03:00 RunJob.py -> pilot/RunJob.py
lrwxrwxrwx 1 root root        20 Jan 18 03:00 RunJobEvent.py -> pilot/RunJobEvent.py
-rw------- 1 root root        19 Jan 18 03:00 START_TIME_4214167768
-rw------- 1 root root         1 Jan 18 03:00 STATUSCODE
lrwxrwxrwx 1 root root        15 Jan 18 03:00 VmPeak.py -> pilot/VmPeak.py
-rw------- 1 root root   7117657 Jan 18 03:00 agis_ddmendpoints.cvmfs.json
-rw------- 1 root root   5410289 Jan 18 03:00 agis_schedconf.cvmfs.json
-rw-r--r-- 1 root root         0 Jan 18 03:00 boinc_lockfile
-rw-r--r-- 1 root root      8192 Jan 18 03:03 boinc_mmap_file
-rw-r--r-- 1 root root       523 Jan 18 03:03 boinc_task_state.xml
-rw------- 1 root root       484 Jan 18 03:03 fLcKDmrAU4tnlyackoJh5iwnABFKDmABFKDmMdiVDmABFKDmbvl4mm.diag
-rw-r--r-- 1 root root      5910 Jan 18 03:00 init_data.xml
-rw-r--r-- 1 root root   1094075 Jan 18 03:00 input.tar.gz
-rw-r--r-- 1 root root       105 Jan 18 03:00 job.xml
-rw------- 1 root root      1273 Jan 18 03:03 jobSmallFiles.tgz
-rw------- 1 root root    159576 Jan 18 03:03 log.16590002._053374.job.log.1
-rw------- 1 root root     18896 Jan 18 03:01 log.16590002._053374.job.log.tgz.1
-rw------- 1 root root       226 Jan 18 03:02 log_extracts.txt
-rw------- 1 root root       598 Jan 18 03:03 metadata-surl.xml
-rw------- 1 root root       241 Jan 18 03:02 output.list
-rw------- 1 root root        11 Jan 18 03:00 pandaIDs.out
-rw------- 1 4871 1028      2924 Jan 17 22:14 pandaJobData.out
-rw------- 1 root root      2924 Jan 18 03:00 pandaJobData_1.out
-rw------- 1 root root      1922 Jan 18 03:02 panda_node_struct.pickle
drwx------ 6 root root     12288 Jan 18 03:01 pilot
lrwxrwxrwx 1 root root        14 Jan 18 03:00 pilot.py -> pilot/pilot.py
-rw------- 1 root root       202 Jan 18 03:01 pilot_error_report.json
-rw-r--r-- 1 root root   1087541 Dec 17 14:33 pilotcode.tar.gz
-rw------- 1 root root       139 Jan 18 03:03 pilotlog-last.txt
-rw------- 1 root root     11325 Jan 18 03:00 pilotlog.txt
-rw-r--r-- 1 root root      3801 Jan 18 03:00 queuedata.json
-rwxr-xr-x 1 root root      8356 Jan 18 03:00 run_atlas
-rwx------ 1 4871 1028     17145 Jan 17 22:14 runpilot3-wrapper.sh
-rw-r--r-- 1 root root       712 Jan 18 03:03 runtime_log
-rw-r--r-- 1 root root      7442 Jan 18 03:03 runtime_log.err
drwxrwx--x 2 root root      4096 Jan 18 03:03 shared
-rw-r--r-- 1 root root      8667 Jan 18 03:00 start_atlas.sh
-rw-r--r-- 1 root root      8005 Jan 18 03:03 stderr.txt
-rw------- 1 root root        46 Jan 18 03:01 workdir_size-4214167768.json
-rw-r--r-- 1 root root       100 Jan 18 03:00 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 root root        23 Jan 18 03:03 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
03:03:37 (8977): run_atlas exited; CPU time 35.221645
03:03:37 (8977): called boinc_finish(0)

</stderr_txt>
]]>

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