| Name | aM1LDmZQV2tnyYickojUe11pABFKDmABFKDm2W8QDmABFKDmcuAoQo_0 |
| Workunit | 106001373 |
| Created | 12 Jan 2019, 10:12:24 UTC |
| Sent | 12 Jan 2019, 12:17:29 UTC |
| Report deadline | 20 Jan 2019, 12:17:29 UTC |
| Received | 12 Jan 2019, 14:05:00 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 10559963 |
| Run time | 13 min 2 sec |
| CPU time | 45 sec |
| Validate state | Valid |
| Credit | 65.70 |
| Device peak FLOPS | 12.87 GFLOPS |
| Application version | ATLAS Simulation v2.54 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 141.73 MB |
| Peak swap size | 465.57 MB |
| Peak disk usage | 861.02 MB |
Stderr output
<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
14:01:25 (3895): wrapper (7.7.26015): starting
14:01:25 (3895): wrapper: running run_atlas (--nthreads 8)
singularity image is /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '8']
THREADS=8
Checking for CVMFS
CVMFS is installed
OS:CentOS Linux release 7.6.1810 (Core)
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /var/lib/boinc/slots/17/shared/ATLAS.root_0
copy /var/lib/boinc/slots/17/shared/input.tar.gz
copy /var/lib/boinc/slots/17/shared/RTE.tar.gz
copy /var/lib/boinc/slots/17/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=8;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /var/lib/boinc/slots/17 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
***********************log_extracts.txt*************************
- Last 10 lines from /var/lib/boinc/slots/17/Panda_Pilot_5906_1547298348/PandaJob/athena_stdout.txt -
Error: unable to setup default version value for asetup
Error: unable to setup default version value for rcsetup
- Walltime -
JobRetrival=1, StageIn=15, Execution=203, StageOut=0, CleanUp=21
***********************pilot_error_report.json*********************
{
"4206980665": {
"2": [
{
"pilotErrorCode": 0,
"pilotErrorDiag": "Job failed: Non-zero failed job return code: 1"
}
]
}
}
*****************The last 100 lines of the pilot log******************
"recoverdir": null,
"region": "Nordugrid",
"releases": null,
"resource_type": "cloud_special",
"retry": "False",
"se": "token:ATLASDATADISK:srm://srm.ndgf.org:8443/srm/managerv2?SFN=",
"sein": null,
"seinopt": null,
"seopt": "token:ATLASDATADISK:srm://srm.ndgf.org:8443/srm/managerv2?SFN=",
"sepath": "/atlas/disk/atlasdatadisk/rucio",
"seprodpath": "/atlas/disk/atlasdatadisk/rucio",
"setokens": "ATLASDATADISK",
"site": "BOINC",
"siteid": "BOINC_MCORE",
"sitershare": null,
"space": 0,
"special_par": null,
"stageinretry": 2,
"stageoutretry": 2,
"status": "brokeroff",
"statusoverride": "offline",
"sysconfig": "manual",
"system": "arc",
"tags": "arc",
"tier": "T3",
"timefloor": 0,
"tmpdir": null,
"transferringlimit": 20000,
"tspace": "2070-01-01T00:00:00",
"use_newmover": "True",
"validatedreleases": "True",
"version": null,
"wansinklimit": null,
"wansourcelimit": null,
"wnconnectivity": "full",
"wntmpdir": null,
"workflow": null
}
2019-01-12 13:05:48|5906|SiteInformat| Queuedata was successfully downloaded by pilot wrapper script
2019-01-12 13:05:48|5906|ATLASSiteInf| curl command returned valid queuedata
2019-01-12 13:05:48|5906|ATLASSiteInf| Site BOINC_MCORE is currently in brokeroff mode
2019-01-12 13:05:48|5906|ATLASSiteInf| Job recovery turned off
2019-01-12 13:05:48|5906|ATLASSiteInf| Confirmed correctly formatted rucio sepath
2019-01-12 13:05:48|5906|ATLASSiteInf| Confirmed correctly formatted rucio seprodpath
2019-01-12 13:05:48|5906|SiteInformat| Evaluating queuedata
2019-01-12 13:05:48|5906|SiteInformat| Setting unset pilot variables using queuedata
2019-01-12 13:05:48|5906|SiteInformat| appdir:
2019-01-12 13:05:48|5906|pUtil.py | File registration will be done by server
2019-01-12 13:05:48|5906|pUtil.py | Updated stage-in retry number to 2
2019-01-12 13:05:48|5906|pUtil.py | Updated stage-out retry number to 2
2019-01-12 13:05:48|5906|pUtil.py | Detected unset (NULL) release/homepackage string
2019-01-12 13:05:48|5906|ATLASExperim| Application dir confirmed: /var/lib/boinc/slots/17/
2019-01-12 13:05:48|5906|pilot.py | Pilot will serve experiment: Nordugrid-ATLAS
2019-01-12 13:05:48|5906|ATLASExperim| Architecture information:
2019-01-12 13:05:48|5906|ATLASExperim| Excuting command: lsb_release -a
2019-01-12 13:05:48|5906|ATLASExperim|
sh: lsb_release: command not found
2019-01-12 13:05:48|5906|pUtil.py | getSiteInformation: got experiment=ATLAS
2019-01-12 13:05:48|5906|ATLASExperim| appdirs = ['/cvmfs/atlas.cern.ch/repo/sw']
2019-01-12 13:05:51|5906|ATLASExperim| head of /cvmfs/atlas.cern.ch/repo/sw/ChangeLog:
--------------------------------------------------------------------------------
head: cannot open `/cvmfs/atlas.cern.ch/repo/sw/ChangeLog' for reading: Input/output error
--------------------------------------------------------------------------------
2019-01-12 13:05:51|5906|ATLASExperim| ATLAS_PYTHON_PILOT set to /usr/bin/python
2019-01-12 13:05:51|5906|pUtil.py | getSiteInformation: got experiment=ATLAS
2019-01-12 13:05:51|5906|ATLASExperim| Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (time-out: 300)
2019-01-12 13:05:51|5906|pUtil.py | Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (protected by timed_command, timeout: 300 s)
2019-01-12 13:06:28|5906|pUtil.py | Elapsed time: 37
2019-01-12 13:06:28|5906|ATLASExperim| Diagnostics tool has verified CVMFS
2019-01-12 13:06:28|5906|Node.py | Collecting machine features
2019-01-12 13:06:28|5906|Node.py | $MACHINEFEATURES not defined locally
2019-01-12 13:06:28|5906|Node.py | $JOBFEATURES not defined locally
2019-01-12 13:06:28|5906|Node.py | Executing command: hostname -i
2019-01-12 13:06:28|5906|Node.py | IP number of worker node: 128.142.170.92
2019-01-12 13:06:29|5906|pUtil.py | getSiteInformation: got experiment=Nordugrid-ATLAS
2019-01-12 13:06:29|5906|pilot.py | Using site information for experiment: Nordugrid-ATLAS
2019-01-12 13:06:29|5906|pilot.py | Will attempt to create workdir: /var/lib/boinc/slots/17/Panda_Pilot_5906_1547298348
2019-01-12 13:06:29|5906|pilot.py | Creating file: /var/lib/boinc/slots/17/CURRENT_SITEWORKDIR
2019-01-12 13:06:29|5906|pUtil.py | Wrote string "/var/lib/boinc/slots/17/Panda_Pilot_5906_1547298348" to file: /var/lib/boinc/slots/17/CURRENT_SITEWORKDIR
2019-01-12 13:06:29|5906|ATLASExperim| ATLAS_POOLCOND_PATH = /cvmfs/atlas.cern.ch/repo/conditions
2019-01-12 13:06:29|5906|pilot.py | Preparing to execute Cleaner
2019-01-12 13:06:29|5906|pilot.py | Cleaning /var/lib/boinc/slots/17
2019-01-12 13:06:29|5906|Cleaner.py | Cleaner initialized with clean-up limit: 2 hours
2019-01-12 13:06:29|5906|Cleaner.py | Cleaner will scan for lost directories in verified path: /var/lib/boinc/slots/17
2019-01-12 13:06:29|5906|Cleaner.py | Executing empty dirs clean-up, stage 1/5
2019-01-12 13:06:29|5906|Cleaner.py | Purged 0 empty directories
2019-01-12 13:06:29|5906|Cleaner.py | Executing work dir clean-up, stage 2/5
2019-01-12 13:06:29|5906|Cleaner.py | Purged 0 single workDirs directories
2019-01-12 13:06:29|5906|Cleaner.py | Executing maxed-out dirs clean-up, stage 3/5
2019-01-12 13:06:29|5906|Cleaner.py | Purged 0 empty directories
2019-01-12 13:06:29|5906|Cleaner.py | Executing AthenaMP clean-up, stage 4/5 <SKIPPED>
2019-01-12 13:06:29|5906|Cleaner.py | Executing PanDA Pilot dir clean-up, stage 5/5
2019-01-12 13:06:29|5906|Cleaner.py | Number of found job state files: 0
2019-01-12 13:06:29|5906|Cleaner.py | No job state files were found, aborting clean-up
2019-01-12 13:06:29|5906|pilot.py | Update frequencies:
2019-01-12 13:06:29|5906|pilot.py | ...Processes: 300 s
2019-01-12 13:06:29|5906|pilot.py | .......Space: 600 s
2019-01-12 13:06:29|5906|pilot.py | ......Server: 1800 s
2019-01-12 13:06:29|5906|pUtil.py | Timefloor set to zero in queuedata (multi-jobs disabled)
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=761.25s
KernelTime=8.67s
UserTime=44.82s
CPUUsage=7%
MaxResidentMemory=145140kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=160
MinorPageFaults=1123096
Swaps=0
ForcedSwitches=2742
WaitSwitches=19564
Inputs=81064
Outputs=46696
SocketReceived=0
SocketSent=0
Signals=0
nodename=Agile_Boincers@gp015-boinc-a-8.cern.ch
exitcode=0
******************************WorkDir***********************
total 443692
drwxrwx--x. 7 boinc boinc 4096 Jan 12 14:14 .
drwxrwx--x. 20 boinc boinc 176 Jan 12 10:43 ..
-rw-------. 1 boinc boinc 7157505 Jan 12 14:08 agis_ddmendpoints.cvmfs.json
-rw-------. 1 boinc boinc 5694614 Jan 12 14:08 agis_schedconf.cvmfs.json
drwx------. 2 boinc boinc 6 Jan 12 14:01 .alrb
-rw-------. 1 boinc boinc 500 Jan 12 14:14 aM1LDmZQV2tnyYickojUe11pABFKDmABFKDm2W8QDmABFKDmcuAoQo.diag
drwxr-xr-x. 3 boinc boinc 17 Jan 12 14:01 APPS
-rw-------. 1 boinc boinc 543 Jan 12 14:02 .asetup
-rw-r--r--. 1 boinc boinc 0 Jan 12 14:01 boinc_lockfile
-rw-r--r--. 1 boinc boinc 8192 Jan 12 14:14 boinc_mmap_file
-rw-r--r--. 1 boinc boinc 523 Jan 12 14:14 boinc_task_state.xml
-rw-------. 1 boinc boinc 51 Jan 12 14:06 CURRENT_SITEWORKDIR
-rw-r--r--. 1 boinc boinc 438886772 Jan 12 14:01 EVNT.16513522._000654.pool.root.1
-rw-r--r--. 1 boinc boinc 5963 Jan 12 14:01 init_data.xml
-rw-r--r--. 1 boinc boinc 1094074 Jan 12 14:01 input.tar.gz
-rw-------. 1 boinc boinc 1287 Jan 12 14:14 jobSmallFiles.tgz
-rw-r--r--. 1 boinc boinc 105 Jan 12 14:01 job.xml
-rw-------. 1 boinc boinc 170561 Jan 12 14:14 log.16590002._033405.job.log.1
-rw-------. 1 boinc boinc 21326 Jan 12 14:12 log.16590002._033405.job.log.tgz.1
-rw-------. 1 boinc boinc 294 Jan 12 14:12 log_extracts.txt
-rw-------. 1 boinc boinc 598 Jan 12 14:14 metadata-surl.xml
-rw-------. 1 boinc boinc 241 Jan 12 14:12 output.list
-rw-------. 1 boinc boinc 11 Jan 12 14:06 pandaIDs.out
-rw-------. 1 boinc boinc 2924 Jan 12 14:06 pandaJobData_1.out
-rw-------. 1 boinc boinc 2924 Jan 12 11:10 pandaJobData.out
-rw-------. 1 boinc boinc 2050 Jan 12 14:12 panda_node_struct.pickle
drwx------. 6 boinc boinc 8192 Jan 12 14:11 pilot
-rw-r--r--. 1 boinc boinc 1087541 Dec 17 14:33 pilotcode.tar.gz
-rw-------. 1 boinc boinc 202 Jan 12 14:11 pilot_error_report.json
-rw-------. 1 boinc boinc 23 Jan 12 14:05 PILOT_INITDIR
-rw-------. 1 boinc boinc 137 Jan 12 14:14 pilotlog-last.txt
-rw-------. 1 boinc boinc 11112 Jan 12 14:06 pilotlog.txt
lrwxrwxrwx. 1 boinc boinc 14 Jan 12 14:05 pilot.py -> pilot/pilot.py
lrwxrwxrwx. 1 boinc boinc 18 Jan 12 14:05 PILOTVERSION -> pilot/PILOTVERSION
drwx------. 3 boinc boinc 19 Jan 12 14:08 .pki
-rw-r--r--. 1 boinc boinc 3801 Jan 12 14:06 queuedata.json
-rw-r--r--. 1 boinc boinc 605 Jan 12 14:01 RTE.tar.gz
-rwxr-xr-x. 1 boinc boinc 8356 Jan 12 14:01 run_atlas
lrwxrwxrwx. 1 boinc boinc 20 Jan 12 14:05 RunJobEvent.py -> pilot/RunJobEvent.py
lrwxrwxrwx. 1 boinc boinc 15 Jan 12 14:05 RunJob.py -> pilot/RunJob.py
-rwx------. 1 boinc boinc 17145 Jan 12 11:10 runpilot3-wrapper.sh
-rw-r--r--. 1 boinc boinc 712 Jan 12 14:14 runtime_log
-rw-r--r--. 1 boinc boinc 7628 Jan 12 14:14 runtime_log.err
drwxrwx--x. 2 boinc boinc 107 Jan 12 14:14 shared
-rw-r--r--. 1 boinc boinc 8667 Jan 12 14:01 start_atlas.sh
-rw-------. 1 boinc boinc 19 Jan 12 14:06 START_TIME_4206980665
-rw-------. 1 boinc boinc 1 Jan 12 14:06 STATUSCODE
-rw-r--r--. 1 boinc boinc 8533 Jan 12 14:14 stderr.txt
lrwxrwxrwx. 1 boinc boinc 15 Jan 12 14:05 VmPeak.py -> pilot/VmPeak.py
-rw-------. 1 boinc boinc 46 Jan 12 14:12 workdir_size-4206980665.json
-rw-r--r--. 1 boinc boinc 100 Jan 12 14:01 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 boinc boinc 23 Jan 12 14:14 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
14:14:25 (3895): run_atlas exited; CPU time 45.328482
14:14:25 (3895): called boinc_finish(0)
</stderr_txt>
]]>
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