Message boards : ATLAS application : Apptainer error
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M0CZY

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Message 51906 - Posted: 24 May 2025, 7:53:51 UTC

I'm trying Atlas native, but getting errors. Can someone diagnose what I have done wrong, and how I should fix it:
[2025-05-24 08:21:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-24 08:21:03] Checking for apptainer binary...
[2025-05-24 08:21:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-24 08:21:03] Running /usr/bin/apptainer --version
[2025-05-24 08:21:04] apptainer version 1.3.4
[2025-05-24 08:21:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-24 08:21:05] apptainer isnt working: #[91mERROR  : Could not write info to setgroups: Permission denied
[2025-05-24 08:21:05] #[0m#[91mERROR  : Error while waiting event for user namespace mappings: no event received
[2025-05-24 08:21:05] #[0m
08:31:06 (589891): run_atlas exited; CPU time 0.212494
08:31:06 (589891): app exit status: 0x1
08:31:06 (589891): called boinc_finish(195)

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Profile Landjunge

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Message 51907 - Posted: 24 May 2025, 11:25:59 UTC - in response to Message 51906.  
Last modified: 24 May 2025, 11:26:27 UTC

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M0CZY

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Message 51908 - Posted: 24 May 2025, 12:57:05 UTC - in response to Message 51907.  

You are correct that I experienced the same problem on a previous Ubuntu setup, however I didn't remember it.
I have implemented the workaround, and now my Atlas_native workunit is running correctly now.
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Message boards : ATLAS application : Apptainer error


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