Message boards : ATLAS application : Guide for building everything from sources to run native ATLAS on Debian 9 (Stretch) Version 2
Message board moderation

To post messages, you must log in.

Previous · 1 · 2 · 3

AuthorMessage
Jim1348

Send message
Joined: 15 Nov 14
Posts: 602
Credit: 24,371,321
RAC: 0
Message 42826 - Posted: 10 Jun 2020, 18:31:35 UTC - in response to Message 36880.  

Again, feel free to report mistakes, improvements, ask questions, make any suggestions, etc. It would be much appreciated!

OK, I will. While this has worked several times for me, on my latest installation of Singularity (on Ubuntu 18.04.4), when running "make" I get:
go: updates to go.sum needed, disabled by -mod=readonly

My small amount of searching indicates that some people think this is a feature, not a bug. That is not much help however.
Thanks if you can fix it.
ID: 42826 · Report as offensive     Reply Quote
Jim1348

Send message
Joined: 15 Nov 14
Posts: 602
Credit: 24,371,321
RAC: 0
Message 42851 - Posted: 12 Jun 2020, 18:20:27 UTC - in response to Message 42826.  

Problem solved, maybe.
I have been able to install Singularity 3.5.3 using these instructions:
https://sylabs.io/guides/3.0/user-guide/installation.html

Now we just need native ATLAS to work. One step at a time.
ID: 42851 · Report as offensive     Reply Quote
Jim1348

Send message
Joined: 15 Nov 14
Posts: 602
Credit: 24,371,321
RAC: 0
Message 44486 - Posted: 14 Mar 2021, 22:33:42 UTC - in response to Message 42851.  

Problem solved, maybe.
That procedure no longer works for me on my latest Ubuntu 20.04.2 build, but this one does.
https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=5616&postid=44485#44485

It is actually simpler, and gives you a recent version of GO, along with the latest version (3.7.2) of Singularity.
Lots of luck.
ID: 44486 · Report as offensive     Reply Quote
Profile zepingouin
Avatar

Send message
Joined: 7 Jan 07
Posts: 41
Credit: 15,959,427
RAC: 271
Message 45019 - Posted: 27 May 2021, 20:45:19 UTC - in response to Message 45016.  
Last modified: 27 May 2021, 20:47:26 UTC

Singularity 3.7.3 is current.
I updated the procedure mentioned above.
ID: 45019 · Report as offensive     Reply Quote
vigilian

Send message
Joined: 23 Jul 05
Posts: 53
Credit: 2,707,793
RAC: 0
Message 45027 - Posted: 28 May 2021, 6:55:16 UTC - in response to Message 45019.  

Singularity 3.7.3 is current.
I updated the procedure mentioned above.



which go version did yo use? because @computezrmle mentioned in another thread that he tried 1.15 and it didn't work but 1.14 was working. I just tried to build the dependencies for go 1.14.5 which is an archived version and I can get all the deps. So did you use the last go version and succeeded to build singularity? or did you use an older one?
ID: 45027 · Report as offensive     Reply Quote
vigilian

Send message
Joined: 23 Jul 05
Posts: 53
Credit: 2,707,793
RAC: 0
Message 45028 - Posted: 28 May 2021, 7:02:01 UTC - in response to Message 45027.  

Singularity 3.7.3 is current.
I updated the procedure mentioned above.



which go version did yo use? because @computezrmle mentioned in another thread that he tried 1.15 and it didn't work but 1.14 was working. I just tried to build the dependencies for go 1.14.5 which is an archived version and I can get all the deps. So did you use the last go version and succeeded to build singularity? or did you use an older one?



github.com/golang/dep/gps
# github.com/golang/dep/gps
/root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:103:21: cannot use sv (type *semver.Version) as type semver.Version in field value
/root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:122:16: invalid type assertion: c.(semver.Version) (non-interface type *semver.Constraints on left)
/root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:149:4: undefined: semver.Constraint

ID: 45028 · Report as offensive     Reply Quote
vigilian

Send message
Joined: 23 Jul 05
Posts: 53
Credit: 2,707,793
RAC: 0
Message 45032 - Posted: 28 May 2021, 11:11:19 UTC - in response to Message 45028.  

no okey I didn't notice that you were referencing another step by step than the original post from this thread. With yours I 've succeeded to install 3.7.2 :)
thanks
ID: 45032 · Report as offensive     Reply Quote
Profile tazzduke

Send message
Joined: 24 Jun 10
Posts: 39
Credit: 4,971,347
RAC: 4,992
Message 45345 - Posted: 16 Sep 2021, 8:50:22 UTC - in response to Message 45032.  

Greetings All

Had to rebuild one of my workstations, some of the computer details are as follows

Computer - ID: 10695708
Linux Mint 20.2
Kernel Version - 5.4.0-84
Boinc Version - 7.16.6
GO Version - go1.17.1
Singularity Version - 3.8.0-rc.1+287-g5a02820ef

Followed the instructions at the start of this thread, so I could do Atlas Native Tasks.

I installed all the packages, then started from Build and install cvmfs, however it did stop during make, as I needed to install python-setuptools.

Then I ran the make command again and then it continued successfully.

Completed this workunit successfully - https://lhcathome.cern.ch/lhcathome/result.php?resultid=325379002

Cheers
ID: 45345 · Report as offensive     Reply Quote
Ryan Munro

Send message
Joined: 17 Aug 17
Posts: 68
Credit: 5,334,861
RAC: 18,944
Message 46437 - Posted: 14 Mar 2022, 11:46:13 UTC

Hi,

I got to section 4, I ran cmake ../ and it completed with errors:

-- Configuring incomplete, errors occurred!
See also "/home/ryan/cvmfs_source/build/CMakeFiles/CMakeOutput.log".

Logfile output below, any ideas?

The system is: Linux - 5.4.0-100-generic - x86_64
Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded.
Compiler: /usr/bin/cc 
Build flags: 
Id flags:  

The output was:
0


Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out"

The C compiler identification is GNU, found in "/home/ryan/cvmfs_source/build/CMakeFiles/3.16.3/CompilerIdC/a.out"

Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded.
Compiler: /usr/bin/c++ 
Build flags: 
Id flags:  

The output was:
0


Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out"

The CXX compiler identification is GNU, found in "/home/ryan/cvmfs_source/build/CMakeFiles/3.16.3/CompilerIdCXX/a.out"

Determining if the C compiler works passed with the following output:
Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_1c6f1/fast && /usr/bin/make -f CMakeFiles/cmTC_1c6f1.dir/build.make CMakeFiles/cmTC_1c6f1.dir/build
make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_1c6f1.dir/testCCompiler.c.o
/usr/bin/cc    -o CMakeFiles/cmTC_1c6f1.dir/testCCompiler.c.o   -c /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp/testCCompiler.c
Linking C executable cmTC_1c6f1
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_1c6f1.dir/link.txt --verbose=1
/usr/bin/cc      CMakeFiles/cmTC_1c6f1.dir/testCCompiler.c.o  -o cmTC_1c6f1 
make[1]: Leaving directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'



Detecting C compiler ABI info compiled with the following output:
Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_428ac/fast && /usr/bin/make -f CMakeFiles/cmTC_428ac.dir/build.make CMakeFiles/cmTC_428ac.dir/build
make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o
/usr/bin/cc   -v -o CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o   -c /usr/share/cmake-3.16/Modules/CMakeCCompilerABI.c
Using built-in specs.
COLLECT_GCC=/usr/bin/cc
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/cc1 -quiet -v -imultiarch x86_64-linux-gnu /usr/share/cmake-3.16/Modules/CMakeCCompilerABI.c -quiet -dumpbase CMakeCCompilerABI.c -mtune=generic -march=x86-64 -auxbase-strip CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o -version -fasynchronous-unwind-tables -fstack-protector-strong -Wformat -Wformat-security -fstack-clash-protection -fcf-protection -o /tmp/ccypY2mC.s
GNU C17 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
	compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"
#include "..." search starts here:
#include <...> search starts here:
 /usr/lib/gcc/x86_64-linux-gnu/9/include
 /usr/local/include
 /usr/include/x86_64-linux-gnu
 /usr/include
End of search list.
GNU C17 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
	compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
Compiler executable checksum: bbf13931d8de1abe14040c9909cb6969
COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64'
 as -v --64 -o CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o /tmp/ccypY2mC.s
GNU assembler version 2.34 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.34
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64'
Linking C executable cmTC_428ac
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_428ac.dir/link.txt --verbose=1
/usr/bin/cc     -v CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o  -o cmTC_428ac 
Using built-in specs.
COLLECT_GCC=/usr/bin/cc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_428ac' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccnJtNp2.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o cmTC_428ac /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o -lgcc --push-state --as-needed -lgcc_s --pop-state -lc -lgcc --push-state --as-needed -lgcc_s --pop-state /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_428ac' '-mtune=generic' '-march=x86-64'
make[1]: Leaving directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'



Parsed C implicit include dir info from above output: rv=done
  found start of include info
  found start of implicit include info
    add: [/usr/lib/gcc/x86_64-linux-gnu/9/include]
    add: [/usr/local/include]
    add: [/usr/include/x86_64-linux-gnu]
    add: [/usr/include]
  end of search list found
  collapse include dir [/usr/lib/gcc/x86_64-linux-gnu/9/include] ==> [/usr/lib/gcc/x86_64-linux-gnu/9/include]
  collapse include dir [/usr/local/include] ==> [/usr/local/include]
  collapse include dir [/usr/include/x86_64-linux-gnu] ==> [/usr/include/x86_64-linux-gnu]
  collapse include dir [/usr/include] ==> [/usr/include]
  implicit include dirs: [/usr/lib/gcc/x86_64-linux-gnu/9/include;/usr/local/include;/usr/include/x86_64-linux-gnu;/usr/include]


Parsed C implicit link information from above output:
  link line regex: [^( *|.*[/\])(ld|CMAKE_LINK_STARTFILE-NOTFOUND|([^/\]+-)?ld|collect2)[^/\]*( |$)]
  ignore line: [Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp]
  ignore line: []
  ignore line: [Run Build Command(s):/usr/bin/make cmTC_428ac/fast && /usr/bin/make -f CMakeFiles/cmTC_428ac.dir/build.make CMakeFiles/cmTC_428ac.dir/build]
  ignore line: [make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp']
  ignore line: [Building C object CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o]
  ignore line: [/usr/bin/cc   -v -o CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o   -c /usr/share/cmake-3.16/Modules/CMakeCCompilerABI.c]
  ignore line: [Using built-in specs.]
  ignore line: [COLLECT_GCC=/usr/bin/cc]
  ignore line: [OFFLOAD_TARGET_NAMES=nvptx-none:hsa]
  ignore line: [OFFLOAD_TARGET_DEFAULT=1]
  ignore line: [Target: x86_64-linux-gnu]
  ignore line: [Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c ada c++ go brig d fortran objc obj-c++ gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32 m64 mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu]
  ignore line: [Thread model: posix]
  ignore line: [gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) ]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64']
  ignore line: [ /usr/lib/gcc/x86_64-linux-gnu/9/cc1 -quiet -v -imultiarch x86_64-linux-gnu /usr/share/cmake-3.16/Modules/CMakeCCompilerABI.c -quiet -dumpbase CMakeCCompilerABI.c -mtune=generic -march=x86-64 -auxbase-strip CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o -version -fasynchronous-unwind-tables -fstack-protector-strong -Wformat -Wformat-security -fstack-clash-protection -fcf-protection -o /tmp/ccypY2mC.s]
  ignore line: [GNU C17 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)]
  ignore line: [	compiled by GNU C version 9.3.0  GMP version 6.2.0  MPFR version 4.0.2  MPC version 1.1.0  isl version isl-0.22.1-GMP]
  ignore line: []
  ignore line: [GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072]
  ignore line: [ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"]
  ignore line: [ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed"]
  ignore line: [ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"]
  ignore line: [#include "..." search starts here:]
  ignore line: [#include <...> search starts here:]
  ignore line: [ /usr/lib/gcc/x86_64-linux-gnu/9/include]
  ignore line: [ /usr/local/include]
  ignore line: [ /usr/include/x86_64-linux-gnu]
  ignore line: [ /usr/include]
  ignore line: [End of search list.]
  ignore line: [GNU C17 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)]
  ignore line: [	compiled by GNU C version 9.3.0  GMP version 6.2.0  MPFR version 4.0.2  MPC version 1.1.0  isl version isl-0.22.1-GMP]
  ignore line: []
  ignore line: [GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072]
  ignore line: [Compiler executable checksum: bbf13931d8de1abe14040c9909cb6969]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64']
  ignore line: [ as -v --64 -o CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o /tmp/ccypY2mC.s]
  ignore line: [GNU assembler version 2.34 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.34]
  ignore line: [COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/]
  ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o' '-c' '-mtune=generic' '-march=x86-64']
  ignore line: [Linking C executable cmTC_428ac]
  ignore line: [/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_428ac.dir/link.txt --verbose=1]
  ignore line: [/usr/bin/cc     -v CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o  -o cmTC_428ac ]
  ignore line: [Using built-in specs.]
  ignore line: [COLLECT_GCC=/usr/bin/cc]
  ignore line: [COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper]
  ignore line: [OFFLOAD_TARGET_NAMES=nvptx-none:hsa]
  ignore line: [OFFLOAD_TARGET_DEFAULT=1]
  ignore line: [Target: x86_64-linux-gnu]
  ignore line: [Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c ada c++ go brig d fortran objc obj-c++ gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32 m64 mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu]
  ignore line: [Thread model: posix]
  ignore line: [gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) ]
  ignore line: [COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/]
  ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_428ac' '-mtune=generic' '-march=x86-64']
  link line: [ /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccnJtNp2.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o cmTC_428ac /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o -lgcc --push-state --as-needed -lgcc_s --pop-state -lc -lgcc --push-state --as-needed -lgcc_s --pop-state /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o]
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/collect2] ==> ignore
    arg [-plugin] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so] ==> ignore
    arg [-plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper] ==> ignore
    arg [-plugin-opt=-fresolution=/tmp/ccnJtNp2.res] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc_s] ==> ignore
    arg [-plugin-opt=-pass-through=-lc] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc_s] ==> ignore
    arg [--build-id] ==> ignore
    arg [--eh-frame-hdr] ==> ignore
    arg [-m] ==> ignore
    arg [elf_x86_64] ==> ignore
    arg [--hash-style=gnu] ==> ignore
    arg [--as-needed] ==> ignore
    arg [-dynamic-linker] ==> ignore
    arg [/lib64/ld-linux-x86-64.so.2] ==> ignore
    arg [-pie] ==> ignore
    arg [-znow] ==> ignore
    arg [-zrelro] ==> ignore
    arg [-o] ==> ignore
    arg [cmTC_428ac] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o] ==> ignore
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9]
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu]
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib]
    arg [-L/lib/x86_64-linux-gnu] ==> dir [/lib/x86_64-linux-gnu]
    arg [-L/lib/../lib] ==> dir [/lib/../lib]
    arg [-L/usr/lib/x86_64-linux-gnu] ==> dir [/usr/lib/x86_64-linux-gnu]
    arg [-L/usr/lib/../lib] ==> dir [/usr/lib/../lib]
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9/../../..] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../..]
    arg [CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o] ==> ignore
    arg [-lgcc] ==> lib [gcc]
    arg [--push-state] ==> ignore
    arg [--as-needed] ==> ignore
    arg [-lgcc_s] ==> lib [gcc_s]
    arg [--pop-state] ==> ignore
    arg [-lc] ==> lib [c]
    arg [-lgcc] ==> lib [gcc]
    arg [--push-state] ==> ignore
    arg [--as-needed] ==> ignore
    arg [-lgcc_s] ==> lib [gcc_s]
    arg [--pop-state] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o] ==> ignore
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9] ==> [/usr/lib/gcc/x86_64-linux-gnu/9]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib] ==> [/usr/lib]
  collapse library dir [/lib/x86_64-linux-gnu] ==> [/lib/x86_64-linux-gnu]
  collapse library dir [/lib/../lib] ==> [/lib]
  collapse library dir [/usr/lib/x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/../lib] ==> [/usr/lib]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../..] ==> [/usr/lib]
  implicit libs: [gcc;gcc_s;c;gcc;gcc_s]
  implicit dirs: [/usr/lib/gcc/x86_64-linux-gnu/9;/usr/lib/x86_64-linux-gnu;/usr/lib;/lib/x86_64-linux-gnu;/lib]
  implicit fwks: []


Determining if the CXX compiler works passed with the following output:
Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_fc911/fast && /usr/bin/make -f CMakeFiles/cmTC_fc911.dir/build.make CMakeFiles/cmTC_fc911.dir/build
make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_fc911.dir/testCXXCompiler.cxx.o
/usr/bin/c++     -o CMakeFiles/cmTC_fc911.dir/testCXXCompiler.cxx.o -c /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp/testCXXCompiler.cxx
Linking CXX executable cmTC_fc911
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_fc911.dir/link.txt --verbose=1
/usr/bin/c++       CMakeFiles/cmTC_fc911.dir/testCXXCompiler.cxx.o  -o cmTC_fc911 
make[1]: Leaving directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'



Detecting CXX compiler ABI info compiled with the following output:
Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/make cmTC_cb35d/fast && /usr/bin/make -f CMakeFiles/cmTC_cb35d.dir/build.make CMakeFiles/cmTC_cb35d.dir/build
make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o
/usr/bin/c++    -v -o CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o -c /usr/share/cmake-3.16/Modules/CMakeCXXCompilerABI.cpp
Using built-in specs.
COLLECT_GCC=/usr/bin/c++
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o' '-c' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/cc1plus -quiet -v -imultiarch x86_64-linux-gnu -D_GNU_SOURCE /usr/share/cmake-3.16/Modules/CMakeCXXCompilerABI.cpp -quiet -dumpbase CMakeCXXCompilerABI.cpp -mtune=generic -march=x86-64 -auxbase-strip CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o -version -fasynchronous-unwind-tables -fstack-protector-strong -Wformat -Wformat-security -fstack-clash-protection -fcf-protection -o /tmp/cctjsTgz.s
GNU C++14 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
	compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/9"
ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed"
ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"
#include "..." search starts here:
#include <...> search starts here:
 /usr/include/c++/9
 /usr/include/x86_64-linux-gnu/c++/9
 /usr/include/c++/9/backward
 /usr/lib/gcc/x86_64-linux-gnu/9/include
 /usr/local/include
 /usr/include/x86_64-linux-gnu
 /usr/include
End of search list.
GNU C++14 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)
	compiled by GNU C version 9.3.0, GMP version 6.2.0, MPFR version 4.0.2, MPC version 1.1.0, isl version isl-0.22.1-GMP

GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072
Compiler executable checksum: 466f818abe2f30ba03783f22bd12d815
COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o' '-c' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 as -v --64 -o CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o /tmp/cctjsTgz.s
GNU assembler version 2.34 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.34
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o' '-c' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
Linking CXX executable cmTC_cb35d
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_cb35d.dir/link.txt --verbose=1
/usr/bin/c++      -v CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o  -o cmTC_cb35d 
Using built-in specs.
COLLECT_GCC=/usr/bin/c++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper
OFFLOAD_TARGET_NAMES=nvptx-none:hsa
OFFLOAD_TARGET_DEFAULT=1
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) 
COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/
LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/
COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_cb35d' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
 /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccFYW19Y.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o cmTC_cb35d /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o
COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_cb35d' '-shared-libgcc' '-mtune=generic' '-march=x86-64'
make[1]: Leaving directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp'



Parsed CXX implicit include dir info from above output: rv=done
  found start of include info
  found start of implicit include info
    add: [/usr/include/c++/9]
    add: [/usr/include/x86_64-linux-gnu/c++/9]
    add: [/usr/include/c++/9/backward]
    add: [/usr/lib/gcc/x86_64-linux-gnu/9/include]
    add: [/usr/local/include]
    add: [/usr/include/x86_64-linux-gnu]
    add: [/usr/include]
  end of search list found
  collapse include dir [/usr/include/c++/9] ==> [/usr/include/c++/9]
  collapse include dir [/usr/include/x86_64-linux-gnu/c++/9] ==> [/usr/include/x86_64-linux-gnu/c++/9]
  collapse include dir [/usr/include/c++/9/backward] ==> [/usr/include/c++/9/backward]
  collapse include dir [/usr/lib/gcc/x86_64-linux-gnu/9/include] ==> [/usr/lib/gcc/x86_64-linux-gnu/9/include]
  collapse include dir [/usr/local/include] ==> [/usr/local/include]
  collapse include dir [/usr/include/x86_64-linux-gnu] ==> [/usr/include/x86_64-linux-gnu]
  collapse include dir [/usr/include] ==> [/usr/include]
  implicit include dirs: [/usr/include/c++/9;/usr/include/x86_64-linux-gnu/c++/9;/usr/include/c++/9/backward;/usr/lib/gcc/x86_64-linux-gnu/9/include;/usr/local/include;/usr/include/x86_64-linux-gnu;/usr/include]


Parsed CXX implicit link information from above output:
  link line regex: [^( *|.*[/\])(ld|CMAKE_LINK_STARTFILE-NOTFOUND|([^/\]+-)?ld|collect2)[^/\]*( |$)]
  ignore line: [Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp]
  ignore line: []
  ignore line: [Run Build Command(s):/usr/bin/make cmTC_cb35d/fast && /usr/bin/make -f CMakeFiles/cmTC_cb35d.dir/build.make CMakeFiles/cmTC_cb35d.dir/build]
  ignore line: [make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp']
  ignore line: [Building CXX object CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o]
  ignore line: [/usr/bin/c++    -v -o CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o -c /usr/share/cmake-3.16/Modules/CMakeCXXCompilerABI.cpp]
  ignore line: [Using built-in specs.]
  ignore line: [COLLECT_GCC=/usr/bin/c++]
  ignore line: [OFFLOAD_TARGET_NAMES=nvptx-none:hsa]
  ignore line: [OFFLOAD_TARGET_DEFAULT=1]
  ignore line: [Target: x86_64-linux-gnu]
  ignore line: [Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c ada c++ go brig d fortran objc obj-c++ gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32 m64 mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu]
  ignore line: [Thread model: posix]
  ignore line: [gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) ]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o' '-c' '-shared-libgcc' '-mtune=generic' '-march=x86-64']
  ignore line: [ /usr/lib/gcc/x86_64-linux-gnu/9/cc1plus -quiet -v -imultiarch x86_64-linux-gnu -D_GNU_SOURCE /usr/share/cmake-3.16/Modules/CMakeCXXCompilerABI.cpp -quiet -dumpbase CMakeCXXCompilerABI.cpp -mtune=generic -march=x86-64 -auxbase-strip CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o -version -fasynchronous-unwind-tables -fstack-protector-strong -Wformat -Wformat-security -fstack-clash-protection -fcf-protection -o /tmp/cctjsTgz.s]
  ignore line: [GNU C++14 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)]
  ignore line: [	compiled by GNU C version 9.3.0  GMP version 6.2.0  MPFR version 4.0.2  MPC version 1.1.0  isl version isl-0.22.1-GMP]
  ignore line: []
  ignore line: [GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072]
  ignore line: [ignoring duplicate directory "/usr/include/x86_64-linux-gnu/c++/9"]
  ignore line: [ignoring nonexistent directory "/usr/local/include/x86_64-linux-gnu"]
  ignore line: [ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/include-fixed"]
  ignore line: [ignoring nonexistent directory "/usr/lib/gcc/x86_64-linux-gnu/9/../../../../x86_64-linux-gnu/include"]
  ignore line: [#include "..." search starts here:]
  ignore line: [#include <...> search starts here:]
  ignore line: [ /usr/include/c++/9]
  ignore line: [ /usr/include/x86_64-linux-gnu/c++/9]
  ignore line: [ /usr/include/c++/9/backward]
  ignore line: [ /usr/lib/gcc/x86_64-linux-gnu/9/include]
  ignore line: [ /usr/local/include]
  ignore line: [ /usr/include/x86_64-linux-gnu]
  ignore line: [ /usr/include]
  ignore line: [End of search list.]
  ignore line: [GNU C++14 (Ubuntu 9.3.0-17ubuntu1~20.04) version 9.3.0 (x86_64-linux-gnu)]
  ignore line: [	compiled by GNU C version 9.3.0  GMP version 6.2.0  MPFR version 4.0.2  MPC version 1.1.0  isl version isl-0.22.1-GMP]
  ignore line: []
  ignore line: [GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072]
  ignore line: [Compiler executable checksum: 466f818abe2f30ba03783f22bd12d815]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o' '-c' '-shared-libgcc' '-mtune=generic' '-march=x86-64']
  ignore line: [ as -v --64 -o CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o /tmp/cctjsTgz.s]
  ignore line: [GNU assembler version 2.34 (x86_64-linux-gnu) using BFD version (GNU Binutils for Ubuntu) 2.34]
  ignore line: [COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/]
  ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o' '-c' '-shared-libgcc' '-mtune=generic' '-march=x86-64']
  ignore line: [Linking CXX executable cmTC_cb35d]
  ignore line: [/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_cb35d.dir/link.txt --verbose=1]
  ignore line: [/usr/bin/c++      -v CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o  -o cmTC_cb35d ]
  ignore line: [Using built-in specs.]
  ignore line: [COLLECT_GCC=/usr/bin/c++]
  ignore line: [COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper]
  ignore line: [OFFLOAD_TARGET_NAMES=nvptx-none:hsa]
  ignore line: [OFFLOAD_TARGET_DEFAULT=1]
  ignore line: [Target: x86_64-linux-gnu]
  ignore line: [Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.3.0-17ubuntu1~20.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c ada c++ go brig d fortran objc obj-c++ gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32 m64 mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/gcc-9-HskZEa/gcc-9-9.3.0/debian/tmp-nvptx/usr hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu]
  ignore line: [Thread model: posix]
  ignore line: [gcc version 9.3.0 (Ubuntu 9.3.0-17ubuntu1~20.04) ]
  ignore line: [COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/]
  ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/9/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/9/../../../:/lib/:/usr/lib/]
  ignore line: [COLLECT_GCC_OPTIONS='-v' '-o' 'cmTC_cb35d' '-shared-libgcc' '-mtune=generic' '-march=x86-64']
  link line: [ /usr/lib/gcc/x86_64-linux-gnu/9/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper -plugin-opt=-fresolution=/tmp/ccFYW19Y.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu --as-needed -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -z now -z relro -o cmTC_cb35d /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/9 -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/9/../../.. CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o]
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/collect2] ==> ignore
    arg [-plugin] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/liblto_plugin.so] ==> ignore
    arg [-plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper] ==> ignore
    arg [-plugin-opt=-fresolution=/tmp/ccFYW19Y.res] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc_s] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc] ==> ignore
    arg [-plugin-opt=-pass-through=-lc] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc_s] ==> ignore
    arg [-plugin-opt=-pass-through=-lgcc] ==> ignore
    arg [--build-id] ==> ignore
    arg [--eh-frame-hdr] ==> ignore
    arg [-m] ==> ignore
    arg [elf_x86_64] ==> ignore
    arg [--hash-style=gnu] ==> ignore
    arg [--as-needed] ==> ignore
    arg [-dynamic-linker] ==> ignore
    arg [/lib64/ld-linux-x86-64.so.2] ==> ignore
    arg [-pie] ==> ignore
    arg [-znow] ==> ignore
    arg [-zrelro] ==> ignore
    arg [-o] ==> ignore
    arg [cmTC_cb35d] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/Scrt1.o] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crti.o] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/crtbeginS.o] ==> ignore
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9]
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu]
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib]
    arg [-L/lib/x86_64-linux-gnu] ==> dir [/lib/x86_64-linux-gnu]
    arg [-L/lib/../lib] ==> dir [/lib/../lib]
    arg [-L/usr/lib/x86_64-linux-gnu] ==> dir [/usr/lib/x86_64-linux-gnu]
    arg [-L/usr/lib/../lib] ==> dir [/usr/lib/../lib]
    arg [-L/usr/lib/gcc/x86_64-linux-gnu/9/../../..] ==> dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../..]
    arg [CMakeFiles/cmTC_cb35d.dir/CMakeCXXCompilerABI.cpp.o] ==> ignore
    arg [-lstdc++] ==> lib [stdc++]
    arg [-lm] ==> lib [m]
    arg [-lgcc_s] ==> lib [gcc_s]
    arg [-lgcc] ==> lib [gcc]
    arg [-lc] ==> lib [c]
    arg [-lgcc_s] ==> lib [gcc_s]
    arg [-lgcc] ==> lib [gcc]
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o] ==> ignore
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9] ==> [/usr/lib/gcc/x86_64-linux-gnu/9]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib] ==> [/usr/lib]
  collapse library dir [/lib/x86_64-linux-gnu] ==> [/lib/x86_64-linux-gnu]
  collapse library dir [/lib/../lib] ==> [/lib]
  collapse library dir [/usr/lib/x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/../lib] ==> [/usr/lib]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../..] ==> [/usr/lib]
  implicit libs: [stdc++;m;gcc_s;gcc;c;gcc_s;gcc]
  implicit dirs: [/usr/lib/gcc/x86_64-linux-gnu/9;/usr/lib/x86_64-linux-gnu;/usr/lib;/lib/x86_64-linux-gnu;/lib]
  implicit fwks: []
ID: 46437 · Report as offensive     Reply Quote
Evangelos Katikos

Send message
Joined: 4 Oct 21
Posts: 10
Credit: 37,777,863
RAC: 179
Message 46438 - Posted: 14 Mar 2022, 16:51:45 UTC - in response to Message 46437.  

Why would you want to do anything of what is described in the first post? For cvmfs go to https://cvmfs.readthedocs.io/en/stable/cpt-quickstart.html#getting-the-software

For everything else described in the first post there are ready made packages. This shouldn't be a sticky thread.
ID: 46438 · Report as offensive     Reply Quote
Ryan Munro

Send message
Joined: 17 Aug 17
Posts: 68
Credit: 5,334,861
RAC: 18,944
Message 46439 - Posted: 14 Mar 2022, 17:03:22 UTC - in response to Message 46438.  

Is there a better guide for us noobs on which packages and where to get them?
ID: 46439 · Report as offensive     Reply Quote
Evangelos Katikos

Send message
Joined: 4 Oct 21
Posts: 10
Credit: 37,777,863
RAC: 179
Message 46440 - Posted: 14 Mar 2022, 17:34:14 UTC - in response to Message 46439.  

For boinc go to https://boinc.berkeley.edu/download_all.php

cvmfs I've written above.

Singularity should exist in your repositories. singularity-container or something like that is called.
ID: 46440 · Report as offensive     Reply Quote
Ryan Munro

Send message
Joined: 17 Aug 17
Posts: 68
Credit: 5,334,861
RAC: 18,944
Message 46441 - Posted: 14 Mar 2022, 22:46:56 UTC - in response to Message 46440.  

Singularity is not installed but its using the one from CVMFS, a quick Google seems to indicate this should be fine?
The app still fails about 12 mins in though, any ideas?

https://lhcathome.cern.ch/lhcathome/result.php?resultid=349039958 an example.
ID: 46441 · Report as offensive     Reply Quote
maeax

Send message
Joined: 2 May 07
Posts: 2071
Credit: 156,095,871
RAC: 103,294
Message 46442 - Posted: 14 Mar 2022, 23:28:20 UTC - in response to Message 46441.  
Last modified: 14 Mar 2022, 23:39:56 UTC

This wrote David:https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=5647&postid=45272#45272
It's better to wrote in a own thread: this is a guide.
ID: 46442 · Report as offensive     Reply Quote
Pascal

Send message
Joined: 13 May 20
Posts: 33
Credit: 1,056,003
RAC: 2,091
Message 48500 - Posted: 5 Sep 2023, 11:21:12 UTC - in response to Message 37522.  

le tuto parait complet mais c'est du chinois pour moi.je comprends rien
ID: 48500 · Report as offensive     Reply Quote
Previous · 1 · 2 · 3

Message boards : ATLAS application : Guide for building everything from sources to run native ATLAS on Debian 9 (Stretch) Version 2


©2024 CERN