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ATLAS application :
Guide for building everything from sources to run native ATLAS on Debian 9 (Stretch) Version 2
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Send message Joined: 15 Nov 14 Posts: 602 Credit: 24,371,321 RAC: 0 |
Again, feel free to report mistakes, improvements, ask questions, make any suggestions, etc. It would be much appreciated! OK, I will. While this has worked several times for me, on my latest installation of Singularity (on Ubuntu 18.04.4), when running "make" I get: go: updates to go.sum needed, disabled by -mod=readonly My small amount of searching indicates that some people think this is a feature, not a bug. That is not much help however. Thanks if you can fix it. |
Send message Joined: 15 Nov 14 Posts: 602 Credit: 24,371,321 RAC: 0 |
Problem solved, maybe. I have been able to install Singularity 3.5.3 using these instructions: https://sylabs.io/guides/3.0/user-guide/installation.html Now we just need native ATLAS to work. One step at a time. |
Send message Joined: 15 Nov 14 Posts: 602 Credit: 24,371,321 RAC: 0 |
Problem solved, maybe.That procedure no longer works for me on my latest Ubuntu 20.04.2 build, but this one does. https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=5616&postid=44485#44485 It is actually simpler, and gives you a recent version of GO, along with the latest version (3.7.2) of Singularity. Lots of luck. |
Send message Joined: 7 Jan 07 Posts: 41 Credit: 16,032,260 RAC: 1 |
Singularity 3.7.3 is current. I updated the procedure mentioned above. |
Send message Joined: 23 Jul 05 Posts: 53 Credit: 2,707,793 RAC: 0 |
Singularity 3.7.3 is current. which go version did yo use? because @computezrmle mentioned in another thread that he tried 1.15 and it didn't work but 1.14 was working. I just tried to build the dependencies for go 1.14.5 which is an archived version and I can get all the deps. So did you use the last go version and succeeded to build singularity? or did you use an older one? |
Send message Joined: 23 Jul 05 Posts: 53 Credit: 2,707,793 RAC: 0 |
Singularity 3.7.3 is current. github.com/golang/dep/gps # github.com/golang/dep/gps /root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:103:21: cannot use sv (type *semver.Version) as type semver.Version in field value /root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:122:16: invalid type assertion: c.(semver.Version) (non-interface type *semver.Constraints on left) /root/go/pkg/mod/github.com/golang/dep@v0.5.4/gps/constraint.go:149:4: undefined: semver.Constraint |
Send message Joined: 23 Jul 05 Posts: 53 Credit: 2,707,793 RAC: 0 |
no okey I didn't notice that you were referencing another step by step than the original post from this thread. With yours I 've succeeded to install 3.7.2 :) thanks |
Send message Joined: 24 Jun 10 Posts: 43 Credit: 5,988,453 RAC: 673 |
Greetings All Had to rebuild one of my workstations, some of the computer details are as follows Computer - ID: 10695708 Linux Mint 20.2 Kernel Version - 5.4.0-84 Boinc Version - 7.16.6 GO Version - go1.17.1 Singularity Version - 3.8.0-rc.1+287-g5a02820ef Followed the instructions at the start of this thread, so I could do Atlas Native Tasks. I installed all the packages, then started from Build and install cvmfs, however it did stop during make, as I needed to install python-setuptools. Then I ran the make command again and then it continued successfully. Completed this workunit successfully - https://lhcathome.cern.ch/lhcathome/result.php?resultid=325379002 Cheers |
Send message Joined: 17 Aug 17 Posts: 81 Credit: 8,286,514 RAC: 11,038 |
Hi, I got to section 4, I ran cmake ../ and it completed with errors: -- Configuring incomplete, errors occurred! See also "/home/ryan/cvmfs_source/build/CMakeFiles/CMakeOutput.log". Logfile output below, any ideas? The system is: Linux - 5.4.0-100-generic - x86_64 Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded. Compiler: /usr/bin/cc Build flags: Id flags: The output was: 0 Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out" The C compiler identification is GNU, found in "/home/ryan/cvmfs_source/build/CMakeFiles/3.16.3/CompilerIdC/a.out" Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded. Compiler: /usr/bin/c++ Build flags: Id flags: The output was: 0 Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out" The CXX compiler identification is GNU, found in "/home/ryan/cvmfs_source/build/CMakeFiles/3.16.3/CompilerIdCXX/a.out" Determining if the C compiler works passed with the following output: Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_1c6f1/fast && /usr/bin/make -f CMakeFiles/cmTC_1c6f1.dir/build.make CMakeFiles/cmTC_1c6f1.dir/build make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_1c6f1.dir/testCCompiler.c.o /usr/bin/cc -o CMakeFiles/cmTC_1c6f1.dir/testCCompiler.c.o -c /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp/testCCompiler.c Linking C executable cmTC_1c6f1 /usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_1c6f1.dir/link.txt --verbose=1 /usr/bin/cc CMakeFiles/cmTC_1c6f1.dir/testCCompiler.c.o -o cmTC_1c6f1 make[1]: Leaving directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp' Detecting C compiler ABI info compiled with the following output: Change Dir: /home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_428ac/fast && /usr/bin/make -f CMakeFiles/cmTC_428ac.dir/build.make CMakeFiles/cmTC_428ac.dir/build make[1]: Entering directory '/home/ryan/cvmfs_source/build/CMakeFiles/CMakeTmp' Building C object CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o /usr/bin/cc -v -o CMakeFiles/cmTC_428ac.dir/CMakeCCompilerABI.c.o -c /usr/share/cmake-3.16/Modules/CMakeCCompilerABI.c Using built-in specs. 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Send message Joined: 4 Oct 21 Posts: 10 Credit: 42,567,222 RAC: 20,954 |
Why would you want to do anything of what is described in the first post? For cvmfs go to https://cvmfs.readthedocs.io/en/stable/cpt-quickstart.html#getting-the-software For everything else described in the first post there are ready made packages. This shouldn't be a sticky thread. |
Send message Joined: 17 Aug 17 Posts: 81 Credit: 8,286,514 RAC: 11,038 |
Is there a better guide for us noobs on which packages and where to get them? |
Send message Joined: 4 Oct 21 Posts: 10 Credit: 42,567,222 RAC: 20,954 |
For boinc go to https://boinc.berkeley.edu/download_all.php cvmfs I've written above. Singularity should exist in your repositories. singularity-container or something like that is called. |
Send message Joined: 17 Aug 17 Posts: 81 Credit: 8,286,514 RAC: 11,038 |
Singularity is not installed but its using the one from CVMFS, a quick Google seems to indicate this should be fine? The app still fails about 12 mins in though, any ideas? https://lhcathome.cern.ch/lhcathome/result.php?resultid=349039958 an example. |
Send message Joined: 2 May 07 Posts: 2188 Credit: 172,773,534 RAC: 29,612 |
This wrote David:https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=5647&postid=45272#45272 It's better to wrote in a own thread: this is a guide. |
Send message Joined: 13 May 20 Posts: 33 Credit: 1,424,504 RAC: 1,159 |
le tuto parait complet mais c'est du chinois pour moi.je comprends rien |
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