Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
04:22:23 (97993): wrapper (7.7.26015): starting
04:22:23 (97993): wrapper: running run_atlas (--nthreads 6)
[2025-12-05 04:22:23] Arguments: --nthreads 6
[2025-12-05 04:22:23] Threads: 6
[2025-12-05 04:22:23] Checking for CVMFS
[2025-12-05 04:22:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 04:22:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 04:22:34] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 04:22:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 04:22:34] 2.11.5.0 98655 0 24608 153639 3 1 4049681 4194304 0 130560 0 0 0.000 1291 350 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.3.250:3128 1
[2025-12-05 04:22:34] CVMFS is ok
[2025-12-05 04:22:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 04:22:34] Checking for apptainer binary...
[2025-12-05 04:22:34] apptainer is not installed, using version from CVMFS
[2025-12-05 04:22:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 04:22:34] boinc-b450f
[2025-12-05 04:22:34] apptainer works
[2025-12-05 04:22:34] Set ATHENA_PROC_NUMBER=6
[2025-12-05 04:22:34] Set ATHENA_CORE_NUMBER=6
[2025-12-05 04:22:34] Starting ATLAS job with PandaID=6915751983
[2025-12-05 04:22:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 06:01:05]  *** The last 200 lines of the pilot log: ***
[2025-12-05 06:01:05] 2025-12-05 04:59:46,247 | INFO     | time since job start (5816s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 04:59:46,647 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-12-05 06:01:05] 2025-12-05 04:59:47,460 | INFO     | monitor loop #458: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 04:59:47,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 04:59:48,077 | INFO     | job 6915751983 has state=finished
[2025-12-05 06:01:05] 2025-12-05 04:59:48,077 | INFO     | preparing for final server update for job 6915751983 in state='finished'
[2025-12-05 06:01:05] 2025-12-05 04:59:48,077 | INFO     | this job has now completed (state=finished)
[2025-12-05 06:01:05] 2025-12-05 04:59:48,078 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-12-05 06:01:05] 2025-12-05 04:59:48,078 | INFO     | log transfer has been attempted: DONE
[2025-12-05 06:01:05] 2025-12-05 04:59:48,078 | INFO     | job 6915751983 has finished - writing final server update
[2025-12-05 06:01:05] 2025-12-05 04:59:48,078 | INFO     | total number of processed events: 400 (read)
[2025-12-05 06:01:05] 2025-12-05 04:59:48,087 | INFO     | executing command: lscpu
[2025-12-05 06:01:05] 2025-12-05 04:59:48,104 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-05 06:01:05] 2025-12-05 04:59:48,252 | INFO     | time since job start (5818s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 04:59:49,963 | INFO     | monitor loop #459: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 04:59:49,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 04:59:50,257 | INFO     | time since job start (5820s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 04:59:51,350 | INFO     | PID=102936 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-05 06:01:05] 2025-12-05 04:59:52,350 | INFO     | time since job start (5822s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 04:59:52,466 | INFO     | monitor loop #460: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 04:59:52,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 04:59:54,356 | INFO     | time since job start (5824s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 04:59:54,967 | INFO     | monitor loop #461: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 04:59:54,967 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 04:59:56,357 | INFO     | time since job start (5826s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 04:59:57,470 | INFO     | monitor loop #462: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 04:59:57,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 04:59:58,362 | INFO     | time since job start (5828s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 04:59:59,973 | INFO     | monitor loop #463: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 04:59:59,973 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 05:00:00,367 | INFO     | time since job start (5830s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 05:00:02,372 | INFO     | time since job start (5832s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 05:00:02,476 | INFO     | monitor loop #464: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 05:00:02,476 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 05:00:04,377 | INFO     | time since job start (5834s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 05:00:04,977 | INFO     | monitor loop #465: job 0:6915751983 is in state 'finished'
[2025-12-05 06:01:05] 2025-12-05 05:00:04,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 06:01:05] 2025-12-05 05:00:06,382 | INFO     | time since job start (5836s) is within the limit (174528.0s)
[2025-12-05 06:01:05] 2025-12-05 05:00:07,075 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-05 06:01:05] 2025-12-05 05:00:07,077 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 3951.0470416666667
[2025-12-05 06:01:05] 2025-12-05 05:00:07,079 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-6915751983/memory_monitor_summary.json (trf name=prmon)
[2025-12-05 06:01:05] 2025-12-05 05:00:07,079 | INFO     | extracted standard info from prmon json
[2025-12-05 06:01:05] 2025-12-05 05:00:07,079 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 06:01:05] 2025-12-05 05:00:07,079 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 06:01:05] 2025-12-05 05:00:07,080 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-12-05 06:01:05] 2025-12-05 05:00:07,080 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-12-05 06:01:05] 2025-12-05 05:00:07,081 | INFO     | fitting pss+swap vs Time
[2025-12-05 06:01:05] 2025-12-05 05:00:07,081 | INFO     | sum of square deviations: 211285822.0
[2025-12-05 06:01:05] 2025-12-05 05:00:07,081 | INFO     | sum of deviations: 79802297485.0
[2025-12-05 06:01:05] 2025-12-05 05:00:07,081 | INFO     | mean x: 1764907985.5
[2025-12-05 06:01:05] 2025-12-05 05:00:07,081 | INFO     | mean y: 2470093.522727273
[2025-12-05 06:01:05] 2025-12-05 05:00:07,081 | INFO     | intersect: -666600289899.1617
[2025-12-05 06:01:05] 2025-12-05 05:00:07,081 | INFO     | chi2: 8.786460798540215
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | current memory leak: 377.70 B/s (using 88 data points, chi2=8.79)
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | could have reported an average CPU frequency of 3918 MHz (7 samples)
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | ..............................
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . Timing measurements:
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . get job = 0 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . initial setup = 2 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . payload setup = 41 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . stage-in = 0 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . payload execution = 5753 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . stage-out = 0 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | . log creation = 0 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,082 | INFO     | ..............................
[2025-12-05 06:01:05] 2025-12-05 05:00:07,135 | INFO     | 
[2025-12-05 06:01:05] 2025-12-05 05:00:07,135 | INFO     | job summary report
[2025-12-05 06:01:05] 2025-12-05 05:00:07,135 | INFO     | --------------------------------------------------
[2025-12-05 06:01:05] 2025-12-05 05:00:07,135 | INFO     | PanDA job id: 6915751983
[2025-12-05 06:01:05] 2025-12-05 05:00:07,135 | INFO     | task id: 47751390
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | errors: (none)
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | pilot state: finished 
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | transexitcode: 0
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | exeerrorcode: 0
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | exeerrordiag: 
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | exitcode: 0
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | exitmsg: OK
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | cpuconsumptiontime: 24361 s
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | nevents: 400
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | neventsw: 0
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | pid: 110856
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | pgrp: 110856
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | corecount: 6
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | event service: False
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | sizes: {0: 2283911, 2: 2284173, 11: 2284201, 5798: 2310922, 5799: 2319934, 5803: 2319990, 5823: 2320312}
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | --------------------------------------------------
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | 
[2025-12-05 06:01:05] 2025-12-05 05:00:07,136 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,143 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | job 6915751983 has completed (purged errors)
[2025-12-05 06:01:05] 2025-12-05 05:00:07,144 | INFO     | overall cleanup function is called
[2025-12-05 06:01:05] 2025-12-05 05:00:08,147 | INFO     | --- collectZombieJob: --- 10, [110856]
[2025-12-05 06:01:05] 2025-12-05 05:00:08,147 | INFO     | zombie collector waiting for pid 110856
[2025-12-05 06:01:05] 2025-12-05 05:00:08,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 06:01:05] 2025-12-05 05:00:08,147 | INFO     | collected zombie processes
[2025-12-05 06:01:05] 2025-12-05 05:00:08,147 | INFO     | will attempt to kill all subprocesses of pid=110856
[2025-12-05 06:01:05] 2025-12-05 05:00:08,204 | INFO     | process IDs to be killed: [110856] (in reverse order)
[2025-12-05 06:01:05] 2025-12-05 05:00:08,225 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 06:01:05] 2025-12-05 05:00:08,225 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 06:01:05] 2025-12-05 05:00:08,227 | INFO     | did not find any defunct processes belonging to 110856
[2025-12-05 06:01:05] 2025-12-05 05:00:08,228 | INFO     | did not find any defunct processes belonging to 110856
[2025-12-05 06:01:05] 2025-12-05 05:00:08,228 | INFO     | ready for new job
[2025-12-05 06:01:05] 2025-12-05 05:00:08,228 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 06:01:05] 2025-12-05 05:00:08,229 | INFO     | ***************************************
[2025-12-05 06:01:05] 2025-12-05 05:00:08,229 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2025-12-05 06:01:05] 2025-12-05 05:00:08,229 | INFO     | ***************************************
[2025-12-05 06:01:05] 2025-12-05 05:00:08,229 | INFO     | 
[2025-12-05 06:01:05] 2025-12-05 05:00:08,230 | INFO     | architecture information:
[2025-12-05 06:01:05] 2025-12-05 05:00:08,230 | INFO     | executing command: cat /etc/os-release
[2025-12-05 06:01:05] 2025-12-05 05:00:08,235 | INFO     | cat /etc/os-release:
[2025-12-05 06:01:05] NAME="CentOS Linux"
[2025-12-05 06:01:05] VERSION="7 (Core)"
[2025-12-05 06:01:05] ID="centos"
[2025-12-05 06:01:05] ID_LIKE="rhel fedora"
[2025-12-05 06:01:05] VERSION_ID="7"
[2025-12-05 06:01:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 06:01:05] ANSI_COLOR="0;31"
[2025-12-05 06:01:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 06:01:05] HOME_URL="https://www.centos.org/"
[2025-12-05 06:01:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 06:01:05] 
[2025-12-05 06:01:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 06:01:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 06:01:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 06:01:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 06:01:05] 
[2025-12-05 06:01:05] 2025-12-05 05:00:08,235 | INFO     | ***************************************
[2025-12-05 06:01:05] 2025-12-05 05:00:08,737 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2025-12-05 06:01:05] 2025-12-05 05:00:08,744 | INFO     | sufficient remaining disk space (22417506304 B)
[2025-12-05 06:01:05] 2025-12-05 05:00:08,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 06:01:05] 2025-12-05 05:00:08,744 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 06:01:05] 2025-12-05 05:00:08,744 | INFO     | update_server=False
[2025-12-05 06:01:05] 2025-12-05 05:00:08,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 06:01:05] 2025-12-05 05:00:08,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 06:01:05] 2025-12-05 05:00:08,745 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 06:01:05] 2025-12-05 05:00:08,745 | INFO     | aborting loop
[2025-12-05 06:01:05] 2025-12-05 05:00:08,902 | INFO     | all payload control threads have been joined
[2025-12-05 06:01:05] 2025-12-05 05:00:08,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 06:01:05] 2025-12-05 05:00:09,577 | INFO     | all job control threads have been joined
[2025-12-05 06:01:05] 2025-12-05 05:00:09,661 | INFO     | all data control threads have been joined
[2025-12-05 06:01:05] 2025-12-05 05:00:09,747 | INFO     | [job] job monitor thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:09,747 | INFO     | [job] retrieve thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:09,750 | INFO     | [job] queue monitor thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:09,827 | INFO     | [payload] failed_post thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:09,907 | INFO     | [payload] control thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:10,015 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:10,287 | INFO     | [payload] validate_post thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:10,582 | INFO     | [job] control thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:10,637 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:10,666 | INFO     | [data] control thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:10,716 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 06:01:05] 2025-12-05 05:00:10,922 | INFO     | [data] copytool_out thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:10,955 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:11,015 | INFO     | [job] validate thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:11,152 | INFO     | [data] copytool_in thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:14,717 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:19,607 | INFO     | job.realtimelogging is not enabled
[2025-12-05 06:01:05] 2025-12-05 05:00:20,612 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 06:01:05] 2025-12-05 05:00:39,530 | INFO     | PID=102936 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-05 06:01:05] 2025-12-05 05:00:39,531 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 06:01:05] 2025-12-05 05:00:39,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 06:01:05] 2025-12-05 05:00:39,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 06:01:05] 2025-12-05 05:00:59,502 | INFO     | [monitor] cgroup control has ended
[2025-12-05 06:01:05] 2025-12-05 05:01:00,607 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140086490785600)>', '<ExcThread(monitor, started 140085592848128)>']
[2025-12-05 06:01:05] 2025-12-05 05:01:00,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 06:01:05] 2025-12-05 05:01:00,632 | INFO     | [monitor] control thread has ended
[2025-12-05 06:01:05] 2025-12-05 05:01:05,627 | INFO     | all workflow threads have been joined
[2025-12-05 06:01:05] 2025-12-05 05:01:05,627 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 06:01:05] 2025-12-05 05:01:05,627 | INFO     | traces error code: 0
[2025-12-05 06:01:05] 2025-12-05 05:01:05,627 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 06:01:05] 2025-12-05 05:01:05,678 [wrapper] ==== pilot stdout END ====
[2025-12-05 06:01:05] 2025-12-05 05:01:05,679 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 06:01:05] 2025-12-05 05:01:05,680 [wrapper] pilotpid: 102936
[2025-12-05 06:01:05] 2025-12-05 05:01:05,681 [wrapper] Pilot exit status: 0
[2025-12-05 06:01:05] 2025-12-05 05:01:05,688 [wrapper] pandaids: 6915751983
[2025-12-05 06:01:05] 2025-12-05 05:01:05,701 [wrapper] cleanup supervisor_pilot  154182 102937
[2025-12-05 06:01:05] 2025-12-05 05:01:05,702 [wrapper] Test setup, not cleaning
[2025-12-05 06:01:05] 2025-12-05 05:01:05,703 [wrapper] apfmon messages muted
[2025-12-05 06:01:05] 2025-12-05 05:01:05,704 [wrapper] ==== wrapper stdout END ====
[2025-12-05 06:01:05] 2025-12-05 05:01:05,707 [wrapper] ==== wrapper stderr END ====
[2025-12-05 06:01:05]  *** Error codes and diagnostics ***
[2025-12-05 06:01:05]     "exeErrorCode": 0,
[2025-12-05 06:01:05]     "exeErrorDiag": "",
[2025-12-05 06:01:05]     "pilotErrorCode": 0,
[2025-12-05 06:01:05]     "pilotErrorDiag": "",
[2025-12-05 06:01:05]  *** Listing of results directory ***
[2025-12-05 06:01:05] total 374618
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc    579449 Dec  5 04:14 pilot3.tar.gz
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc      5112 Dec  5 04:17 queuedata.json
[2025-12-05 06:01:05] -rwx------ 1 boinc boinc     36292 Dec  5 04:17 runpilot2-wrapper.sh
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc       100 Dec  5 04:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 06:01:05] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 04:22 run_atlas
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc       105 Dec  5 04:22 job.xml
[2025-12-05 06:01:05] -rw-r--r-- 2 boinc boinc     15847 Dec  5 04:22 start_atlas.sh
[2025-12-05 06:01:05] drwxrwx--x 2 boinc boinc         5 Dec  5 04:22 shared
[2025-12-05 06:01:05] -rw-r--r-- 2 boinc boinc    592367 Dec  5 04:22 input.tar.gz
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc      6795 Dec  5 04:22 init_data.xml
[2025-12-05 06:01:05] -rw-r--r-- 2 boinc boinc 196469665 Dec  5 04:22 EVNT.47751388._000019.pool.root.1
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc         0 Dec  5 04:22 boinc_lockfile
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc      2469 Dec  5 04:22 pandaJob.out
[2025-12-05 06:01:05] -rw------- 1 boinc boinc        56 Dec  5 04:22 setup.sh.local
[2025-12-05 06:01:05] -rw------- 1 boinc boinc    985572 Dec  5 04:22 agis_schedconf.cvmfs.json
[2025-12-05 06:01:05] -rw------- 1 boinc boinc   1516240 Dec  5 04:22 agis_ddmendpoints.agis.ALL.json
[2025-12-05 06:01:05] drwx------ 5 boinc boinc        22 Dec  5 04:22 pilot3
[2025-12-05 06:01:05] -rw------- 1 boinc boinc 185145985 Dec  5 05:59 HITS.47751390._000458.pool.root.1
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc       529 Dec  5 05:59 boinc_task_state.xml
[2025-12-05 06:01:05] -rw------- 1 boinc boinc      1029 Dec  5 05:59 memory_monitor_summary.json
[2025-12-05 06:01:05] -rw------- 1 boinc boinc    298916 Dec  5 05:59 log.47751390._000458.job.log.tgz.1
[2025-12-05 06:01:05] -rw------- 1 boinc boinc      7751 Dec  5 06:00 heartbeat.json
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc      8192 Dec  5 06:00 boinc_mmap_file
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc        27 Dec  5 06:00 wrapper_checkpoint.txt
[2025-12-05 06:01:05] -rw------- 1 boinc boinc        95 Dec  5 06:00 pilot_heartbeat.json
[2025-12-05 06:01:05] -rw------- 1 boinc boinc      4826 Dec  5 06:01 pilotlog.txt
[2025-12-05 06:01:05] -rw------- 1 boinc boinc    850226 Dec  5 06:01 log.47751390._000458.job.log.1
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc      9464 Dec  5 06:01 runtime_log.err
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc       620 Dec  5 06:01 runtime_log
[2025-12-05 06:01:05] -rw------- 1 boinc boinc   1167360 Dec  5 06:01 result.tar.gz
[2025-12-05 06:01:05] -rw------- 1 boinc boinc       357 Dec  5 06:01 output.list
[2025-12-05 06:01:05] -rw------- 1 boinc boinc       657 Dec  5 06:01 FrvMDmbVbl8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmebMKDm4HrUqn.diag
[2025-12-05 06:01:05] -rw-r--r-- 1 boinc boinc     22043 Dec  5 06:01 stderr.txt
[2025-12-05 06:01:05] HITS file was successfully produced:
[2025-12-05 06:01:05] -rw------- 1 boinc boinc 185145985 Dec  5 05:59 shared/HITS.pool.root.1
[2025-12-05 06:01:05]  *** Contents of shared directory: ***
[2025-12-05 06:01:05] total 373500
[2025-12-05 06:01:05] -rw-r--r-- 2 boinc boinc     15847 Dec  5 04:22 start_atlas.sh
[2025-12-05 06:01:05] -rw-r--r-- 2 boinc boinc    592367 Dec  5 04:22 input.tar.gz
[2025-12-05 06:01:05] -rw-r--r-- 2 boinc boinc 196469665 Dec  5 04:22 ATLAS.root_0
[2025-12-05 06:01:05] -rw------- 1 boinc boinc 185145985 Dec  5 05:59 HITS.pool.root.1
[2025-12-05 06:01:05] -rw------- 1 boinc boinc   1167360 Dec  5 06:01 result.tar.gz
06:01:07 (97993): run_atlas exited; CPU time 24418.424192
06:01:07 (97993): called boinc_finish(0)

</stderr_txt>
]]>

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