Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:28:05 (1812949): wrapper (7.7.26015): starting
08:28:05 (1812949): wrapper: running run_atlas (--nthreads 8)
[2025-12-04 08:28:05] Arguments: --nthreads 8
[2025-12-04 08:28:05] Threads: 8
[2025-12-04 08:28:05] Checking for CVMFS
[2025-12-04 08:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 08:28:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 08:28:07] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 08:28:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 08:28:09] 2.13.3.0 9262 41496 325912 153638 2 308 26680792 32935937 23542 16776704 0 205549540 99.730 139704552 33313 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-04 08:28:09] CVMFS is ok
[2025-12-04 08:28:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 08:28:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 08:28:09] Further information can be found at the LHC@home message board.
[2025-12-04 08:28:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 08:28:09] Checking for apptainer binary...
[2025-12-04 08:28:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 08:28:09] Running /usr/bin/apptainer --version
[2025-12-04 08:28:09] apptainer version 1.4.4-1.el9
[2025-12-04 08:28:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 08:28:10] c-8-32.aglt2.org
[2025-12-04 08:28:10] apptainer works
[2025-12-04 08:28:10] Set ATHENA_PROC_NUMBER=8
[2025-12-04 08:28:10] Set ATHENA_CORE_NUMBER=8
[2025-12-04 08:28:11] Starting ATLAS job with PandaID=6897881376
[2025-12-04 08:28:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-06 03:04:15]  *** The last 200 lines of the pilot log: ***
[2025-12-06 03:04:15] 2025-12-06 08:03:19,227 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 03:04:15] 2025-12-06 08:03:19,708 | INFO     | PID=1819263 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-06 03:04:15] 2025-12-06 08:03:19,708 | INFO     | .. there are 42 such processes running
[2025-12-06 03:04:15] 2025-12-06 08:03:20,710 | INFO     | time since job start (153187s) is within the limit (172800.0s)
[2025-12-06 03:04:15] 2025-12-06 08:03:21,742 | INFO     | monitor loop #7556: job 0:6897881376 is in state 'finished'
[2025-12-06 03:04:15] 2025-12-06 08:03:21,743 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 03:04:15] 2025-12-06 08:03:22,720 | INFO     | time since job start (153189s) is within the limit (172800.0s)
[2025-12-06 03:04:15] 2025-12-06 08:03:23,644 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-06 03:04:15] 2025-12-06 08:03:23,654 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.2330250000005
[2025-12-06 03:04:15] 2025-12-06 08:03:23,739 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6897881376/memory_monitor_summary.json (trf name=prmon)
[2025-12-06 03:04:15] 2025-12-06 08:03:23,741 | INFO     | extracted standard info from prmon json
[2025-12-06 03:04:15] 2025-12-06 08:03:23,741 | INFO     | extracted standard memory fields from prmon json
[2025-12-06 03:04:15] 2025-12-06 08:03:23,741 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-06 03:04:15] 2025-12-06 08:03:23,992 | INFO     | fitting pss+swap vs Time
[2025-12-06 03:04:15] 2025-12-06 08:03:24,073 | INFO     | sum of square deviations: 4879930727875.71
[2025-12-06 03:04:15] 2025-12-06 08:03:24,347 | INFO     | monitor loop #7557: job 0:6897881376 is in state 'finished'
[2025-12-06 03:04:15] 2025-12-06 08:03:24,347 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 03:04:15] 2025-12-06 08:03:25,020 | INFO     | time since job start (153192s) is within the limit (172800.0s)
[2025-12-06 03:04:15] 2025-12-06 08:03:25,964 | INFO     | sum of deviations: 11677576800078.367
[2025-12-06 03:04:15] 2025-12-06 08:03:25,965 | INFO     | mean x: 1764931674.8555467
[2025-12-06 03:04:15] 2025-12-06 08:03:25,965 | INFO     | mean y: 2962719.473264166
[2025-12-06 03:04:15] 2025-12-06 08:03:25,965 | INFO     | intersect: -4220483540.180592
[2025-12-06 03:04:15] 2025-12-06 08:03:25,972 | INFO     | chi2: 33.722881304549304
[2025-12-06 03:04:15] 2025-12-06 08:03:25,976 | INFO     | sum of square deviations: 4850781518071.787
[2025-12-06 03:04:15] 2025-12-06 08:03:26,829 | INFO     | sum of deviations: 12665837762892.516
[2025-12-06 03:04:15] 2025-12-06 08:03:26,829 | INFO     | mean x: 1764931522.362255
[2025-12-06 03:04:15] 2025-12-06 08:03:26,829 | INFO     | mean y: 2967889.1351459417
[2025-12-06 03:04:15] 2025-12-06 08:03:26,829 | INFO     | intersect: -4605431034.125615
[2025-12-06 03:04:15] 2025-12-06 08:03:26,906 | INFO     | chi2: 29.645171794712233
[2025-12-06 03:04:15] 2025-12-06 08:03:26,906 | INFO     | current chi2=29.645171794712233 (change=12.091818231697115 %)
[2025-12-06 03:04:15] 2025-12-06 08:03:26,906 | INFO     | right removable region: 2500
[2025-12-06 03:04:15] 2025-12-06 08:03:26,914 | INFO     | sum of square deviations: 4850776388581.794
[2025-12-06 03:04:15] 2025-12-06 08:03:26,955 | INFO     | monitor loop #7558: job 0:6897881376 is in state 'finished'
[2025-12-06 03:04:15] 2025-12-06 08:03:26,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 03:04:15] 2025-12-06 08:03:27,076 | INFO     | time since job start (153194s) is within the limit (172800.0s)
[2025-12-06 03:04:15] 2025-12-06 08:03:28,958 | INFO     | sum of deviations: 10618933153574.127
[2025-12-06 03:04:15] 2025-12-06 08:03:28,958 | INFO     | mean x: 1764931827.362255
[2025-12-06 03:04:15] 2025-12-06 08:03:28,958 | INFO     | mean y: 2968256.901639344
[2025-12-06 03:04:15] 2025-12-06 08:03:29,009 | INFO     | intersect: -3860679867.4462795
[2025-12-06 03:04:15] 2025-12-06 08:03:29,023 | INFO     | chi2: 29.34764871279719
[2025-12-06 03:04:15] 2025-12-06 08:03:29,024 | INFO     | current chi2=29.34764871279719 (change=12.974077013881619 %)
[2025-12-06 03:04:15] 2025-12-06 08:03:29,024 | INFO     | left removable region: 10
[2025-12-06 03:04:15] 2025-12-06 08:03:29,084 | INFO     | sum of square deviations: 4787052600156.659
[2025-12-06 03:04:15] 2025-12-06 08:03:29,287 | INFO     | time since job start (153196s) is within the limit (172800.0s)
[2025-12-06 03:04:15] 2025-12-06 08:03:29,557 | INFO     | monitor loop #7559: job 0:6897881376 is in state 'finished'
[2025-12-06 03:04:15] 2025-12-06 08:03:29,557 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-06 03:04:15] 2025-12-06 08:03:30,581 | INFO     | sum of deviations: 10910389906697.373
[2025-12-06 03:04:15] 2025-12-06 08:03:30,645 | INFO     | mean x: 1764931796.8759036
[2025-12-06 03:04:15] 2025-12-06 08:03:30,645 | INFO     | mean y: 2978782.1759036146
[2025-12-06 03:04:15] 2025-12-06 08:03:30,645 | INFO     | intersect: -4019557770.2768407
[2025-12-06 03:04:15] 2025-12-06 08:03:30,672 | INFO     | chi2: 21.962741376528264
[2025-12-06 03:04:15] 2025-12-06 08:03:30,673 | INFO     | current memory leak: 2.28 B/s (using 2490 data points, chi2=21.96)
[2025-12-06 03:04:15] 2025-12-06 08:03:30,675 | INFO     | could have reported an average CPU frequency of 2595 MHz (86 samples)
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | ..............................
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . Timing measurements:
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . get job = 1 s
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . initial setup = 8 s
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . payload setup = 80 s
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . stage-in = 1 s
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . payload execution = 152915 s
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . stage-out = 18 s
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | . log creation = 4 s
[2025-12-06 03:04:15] 2025-12-06 08:03:30,712 | INFO     | ..............................
[2025-12-06 03:04:15] 2025-12-06 08:03:31,635 | INFO     | time since job start (153198s) is within the limit (172800.0s)
[2025-12-06 03:04:15] 2025-12-06 08:03:32,619 | INFO     | 
[2025-12-06 03:04:15] 2025-12-06 08:03:32,619 | INFO     | job summary report
[2025-12-06 03:04:15] 2025-12-06 08:03:32,619 | INFO     | --------------------------------------------------
[2025-12-06 03:04:15] 2025-12-06 08:03:32,619 | INFO     | PanDA job id: 6897881376
[2025-12-06 03:04:15] 2025-12-06 08:03:32,619 | INFO     | task id: 47556161
[2025-12-06 03:04:15] 2025-12-06 08:03:32,619 | INFO     | errors: (none)
[2025-12-06 03:04:15] 2025-12-06 08:03:32,619 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | pilot state: finished 
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | transexitcode: 0
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | exeerrorcode: 0
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | exeerrordiag: 
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | exitcode: 0
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | exitmsg: OK
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | cpuconsumptiontime: 303057 s
[2025-12-06 03:04:15] 2025-12-06 08:03:32,620 | INFO     | nevents: 1000
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | neventsw: 0
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | pid: 1831109
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | pgrp: 1831109
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | corecount: 8
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | event service: False
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | sizes: {0: 2283436, 2: 2284037, 3: 2284121, 5: 2284205, 6: 2284376, 7: 2284404, 19: 2284560, 30: 2284588, 42: 2284616, 53: 2284672, 58: 2284962, 65: 2285270, 15300
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | --------------------------------------------------
[2025-12-06 03:04:15] 2025-12-06 08:03:32,621 | INFO     | 
[2025-12-06 03:04:15] 2025-12-06 08:03:32,622 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-06 03:04:15] 2025-12-06 08:03:32,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,874 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,874 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,874 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,875 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,876 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,876 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-06 03:04:15] 2025-12-06 08:03:32,876 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,876 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-06 03:04:15] 2025-12-06 08:03:32,876 | INFO     | job 6897881376 has completed (purged errors)
[2025-12-06 03:04:15] 2025-12-06 08:03:32,876 | INFO     | overall cleanup function is called
[2025-12-06 03:04:15] 2025-12-06 08:03:33,912 | INFO     | --- collectZombieJob: --- 10, [1831109]
[2025-12-06 03:04:15] 2025-12-06 08:03:33,913 | INFO     | zombie collector waiting for pid 1831109
[2025-12-06 03:04:15] 2025-12-06 08:03:33,913 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-06 03:04:15] 2025-12-06 08:03:33,913 | INFO     | collected zombie processes
[2025-12-06 03:04:15] 2025-12-06 08:03:33,913 | INFO     | will attempt to kill all subprocesses of pid=1831109
[2025-12-06 03:04:15] 2025-12-06 08:03:38,603 | INFO     | process IDs to be killed: [1831109] (in reverse order)
[2025-12-06 03:04:15] 2025-12-06 08:03:39,052 | WARNING  | found no corresponding commands to process id(s)
[2025-12-06 03:04:15] 2025-12-06 08:03:39,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-06 03:04:15] 2025-12-06 08:03:39,090 | INFO     | did not find any defunct processes belonging to 1831109
[2025-12-06 03:04:15] 2025-12-06 08:03:39,127 | INFO     | did not find any defunct processes belonging to 1831109
[2025-12-06 03:04:15] 2025-12-06 08:03:39,133 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-06 03:04:15] 2025-12-06 08:03:39,133 | INFO     | ready for new job
[2025-12-06 03:04:15] 2025-12-06 08:03:39,133 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-06 03:04:15] 2025-12-06 08:03:39,154 | INFO     | ***************************************
[2025-12-06 03:04:15] 2025-12-06 08:03:39,154 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-06 03:04:15] 2025-12-06 08:03:39,154 | INFO     | ***************************************
[2025-12-06 03:04:15] 2025-12-06 08:03:39,154 | INFO     | 
[2025-12-06 03:04:15] 2025-12-06 08:03:39,157 | INFO     | architecture information:
[2025-12-06 03:04:15] 2025-12-06 08:03:39,157 | INFO     | executing command: cat /etc/os-release
[2025-12-06 03:04:15] 2025-12-06 08:03:39,229 | INFO     | cat /etc/os-release:
[2025-12-06 03:04:15] NAME="CentOS Linux"
[2025-12-06 03:04:15] VERSION="7 (Core)"
[2025-12-06 03:04:15] ID="centos"
[2025-12-06 03:04:15] ID_LIKE="rhel fedora"
[2025-12-06 03:04:15] VERSION_ID="7"
[2025-12-06 03:04:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-06 03:04:15] ANSI_COLOR="0;31"
[2025-12-06 03:04:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-06 03:04:15] HOME_URL="https://www.centos.org/"
[2025-12-06 03:04:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-06 03:04:15] 
[2025-12-06 03:04:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-06 03:04:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-06 03:04:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-06 03:04:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-06 03:04:15] 
[2025-12-06 03:04:15] 2025-12-06 08:03:39,229 | INFO     | ***************************************
[2025-12-06 03:04:15] 2025-12-06 08:03:39,733 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-06 03:04:15] 2025-12-06 08:03:40,021 | INFO     | sufficient remaining disk space (74392272896 B)
[2025-12-06 03:04:15] 2025-12-06 08:03:40,021 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-06 03:04:15] 2025-12-06 08:03:40,022 | INFO     | current server update state: UPDATING_FINAL
[2025-12-06 03:04:15] 2025-12-06 08:03:40,022 | INFO     | update_server=False
[2025-12-06 03:04:15] 2025-12-06 08:03:40,022 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-06 03:04:15] 2025-12-06 08:03:40,302 | INFO     | all data control threads have been joined
[2025-12-06 03:04:15] 2025-12-06 08:03:40,309 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-06 03:04:15] 2025-12-06 08:03:40,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-06 03:04:15] 2025-12-06 08:03:40,891 | INFO     | aborting loop
[2025-12-06 03:04:15] 2025-12-06 08:03:40,957 | INFO     | all payload control threads have been joined
[2025-12-06 03:04:15] 2025-12-06 08:03:41,027 | INFO     | [job] retrieve thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:41,145 | INFO     | all job control threads have been joined
[2025-12-06 03:04:15] 2025-12-06 08:03:41,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-06 03:04:15] 2025-12-06 08:03:41,309 | INFO     | [data] control thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:41,469 | INFO     | [job] validate thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:41,548 | INFO     | [payload] failed_post thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:41,679 | INFO     | [payload] execute_payloads thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:41,838 | INFO     | [job] create_data_payload thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:41,896 | INFO     | [job] job monitor thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:41,981 | INFO     | [payload] control thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:42,152 | INFO     | [job] control thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:42,284 | INFO     | [job] queue monitor thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:42,308 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:42,308 | INFO     | [data] copytool_in thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:42,317 | INFO     | [data] copytool_out thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:42,330 | INFO     | [payload] validate_pre thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:42,436 | INFO     | [payload] validate_post thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:03:43,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-06 03:04:15] 2025-12-06 08:03:47,520 | INFO     | [data] queue_monitor thread has finished
[2025-12-06 03:04:15] 2025-12-06 08:04:05,812 | INFO     | PID=1819263 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-06 03:04:15] 2025-12-06 08:04:05,812 | INFO     | .. there are 42 such processes running
[2025-12-06 03:04:15] 2025-12-06 08:04:05,813 | INFO     | found 0 job(s) in 20 queues
[2025-12-06 03:04:15] 2025-12-06 08:04:05,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-06 03:04:15] 2025-12-06 08:04:05,814 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-06 03:04:15] 2025-12-06 08:04:07,908 | INFO     | [monitor] cgroup control has ended
[2025-12-06 03:04:15] 2025-12-06 08:04:08,036 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140140368070464)>', '<ExcThread(monitor, started 140139061827328)>']
[2025-12-06 03:04:15] 2025-12-06 08:04:08,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-06 03:04:15] 2025-12-06 08:04:08,884 | INFO     | [monitor] control thread has ended
[2025-12-06 03:04:15] 2025-12-06 08:04:13,061 | INFO     | all workflow threads have been joined
[2025-12-06 03:04:15] 2025-12-06 08:04:13,062 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-06 03:04:15] 2025-12-06 08:04:13,062 | INFO     | traces error code: 0
[2025-12-06 03:04:15] 2025-12-06 08:04:13,062 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-06 03:04:15] 2025-12-06 08:04:13,853 [wrapper] ==== pilot stdout END ====
[2025-12-06 03:04:15] 2025-12-06 08:04:13,924 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-06 03:04:15] 2025-12-06 08:04:13,946 [wrapper] pilotpid: 1819263
[2025-12-06 03:04:15] 2025-12-06 08:04:13,967 [wrapper] Pilot exit status: 0
[2025-12-06 03:04:15] 2025-12-06 08:04:14,175 [wrapper] pandaids: 6897881376
[2025-12-06 03:04:15] 2025-12-06 08:04:15,002 [wrapper] cleanup supervisor_pilot 4081234 1819264
[2025-12-06 03:04:15] 2025-12-06 08:04:15,081 [wrapper] Test setup, not cleaning
[2025-12-06 03:04:15] 2025-12-06 08:04:15,100 [wrapper] apfmon messages muted
[2025-12-06 03:04:15] 2025-12-06 08:04:15,169 [wrapper] ==== wrapper stdout END ====
[2025-12-06 03:04:15] 2025-12-06 08:04:15,237 [wrapper] ==== wrapper stderr END ====
[2025-12-06 03:04:15]  *** Error codes and diagnostics ***
[2025-12-06 03:04:15]     "exeErrorCode": 0,
[2025-12-06 03:04:15]     "exeErrorDiag": "",
[2025-12-06 03:04:15]     "pilotErrorCode": 0,
[2025-12-06 03:04:15]     "pilotErrorDiag": "",
[2025-12-06 03:04:15]  *** Listing of results directory ***
[2025-12-06 03:04:15] total 1346676
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 20:44 pilot3.tar.gz
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 21:07 queuedata.json
[2025-12-06 03:04:15] -rwx------. 1 boincer umatlas     36292 Nov 25 21:10 runpilot2-wrapper.sh
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas       100 Dec  4 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-06 03:04:15] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  4 08:28 run_atlas
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas       105 Dec  4 08:28 job.xml
[2025-12-06 03:04:15] -rw-r--r--. 2 boincer umatlas 409776645 Dec  4 08:28 EVNT.47483658._002369.pool.root.1
[2025-12-06 03:04:15] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-06 03:04:15] drwxrwx--x. 2 boincer umatlas      4096 Dec  4 08:28 shared
[2025-12-06 03:04:15] -rw-r--r--. 2 boincer umatlas    590102 Dec  4 08:28 input.tar.gz
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas         0 Dec  4 08:28 boinc_lockfile
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas      2785 Dec  4 08:28 pandaJob.out
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas        57 Dec  4 08:28 setup.sh.local
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas    985564 Dec  4 08:30 agis_schedconf.cvmfs.json
[2025-12-06 03:04:15] drwx------. 5 boincer umatlas      4096 Dec  4 08:30 pilot3
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas       534 Dec  6 02:11 boinc_task_state.xml
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas 924689426 Dec  6 02:57 HITS.47556161._003512.pool.root.1
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas      6711 Dec  6 03:00 init_data.xml
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas      1060 Dec  6 03:02 memory_monitor_summary.json
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas   1516240 Dec  6 03:02 agis_ddmendpoints.agis.ALL.json
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas   3103090 Dec  6 03:02 log.47556161._003512.job.log.tgz.1
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas      8624 Dec  6 03:03 heartbeat.json
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas        95 Dec  6 03:04 pilot_heartbeat.json
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas        30 Dec  6 03:04 wrapper_checkpoint.txt
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas      8192 Dec  6 03:04 boinc_mmap_file
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas      4824 Dec  6 03:04 pilotlog.txt
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas  17199250 Dec  6 03:04 log.47556161._003512.job.log.1
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas       353 Dec  6 03:04 output.list
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas       620 Dec  6 03:04 runtime_log
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas  20326400 Dec  6 03:04 result.tar.gz
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas      9334 Dec  6 03:04 runtime_log.err
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas       661 Dec  6 03:04 ipLLDm79Ji8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsiMKDmsyMnIn.diag
[2025-12-06 03:04:15] -rw-r--r--. 1 boincer umatlas     21907 Dec  6 03:04 stderr.txt
[2025-12-06 03:04:15] HITS file was successfully produced:
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas 924689426 Dec  6 02:57 shared/HITS.pool.root.1
[2025-12-06 03:04:15]  *** Contents of shared directory: ***
[2025-12-06 03:04:15] total 1323652
[2025-12-06 03:04:15] -rw-r--r--. 2 boincer umatlas 409776645 Dec  4 08:28 ATLAS.root_0
[2025-12-06 03:04:15] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-06 03:04:15] -rw-r--r--. 2 boincer umatlas    590102 Dec  4 08:28 input.tar.gz
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas 924689426 Dec  6 02:57 HITS.pool.root.1
[2025-12-06 03:04:15] -rw-------. 1 boincer umatlas  20326400 Dec  6 03:04 result.tar.gz
03:04:17 (1812949): run_atlas exited; CPU time 307327.714761
03:04:17 (1812949): called boinc_finish(0)

</stderr_txt>
]]>

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