Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:28:33 (2613675): wrapper (7.7.26015): starting
08:28:33 (2613675): wrapper: running run_atlas (--nthreads 9)
[2025-12-04 08:28:33] Arguments: --nthreads 9
[2025-12-04 08:28:33] Threads: 9
[2025-12-04 08:28:33] Checking for CVMFS
[2025-12-04 08:28:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 08:28:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 08:28:33] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 08:28:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 08:28:33] 2.13.3.0 11836 40151 383112 153638 3 280 26248459 32935937 36657 16776704 0 200512849 99.545 224111978 33341 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-04 08:28:33] CVMFS is ok
[2025-12-04 08:28:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 08:28:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 08:28:33] Further information can be found at the LHC@home message board.
[2025-12-04 08:28:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 08:28:33] Checking for apptainer binary...
[2025-12-04 08:28:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 08:28:33] Running /usr/bin/apptainer --version
[2025-12-04 08:28:33] apptainer version 1.4.4-1.el9
[2025-12-04 08:28:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 08:28:33] c6-2-11-1.aglt2.org
[2025-12-04 08:28:33] apptainer works
[2025-12-04 08:28:33] Set ATHENA_PROC_NUMBER=9
[2025-12-04 08:28:33] Set ATHENA_CORE_NUMBER=9
[2025-12-04 08:28:33] Starting ATLAS job with PandaID=6898271953
[2025-12-04 08:28:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 08:22:38]  *** The last 200 lines of the pilot log: ***
[2025-12-05 08:22:38] 2025-12-05 13:21:49,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 08:22:38] 2025-12-05 13:21:50,382 | INFO     | time since job start (85983s) is within the limit (172800.0s)
[2025-12-05 08:22:38] 2025-12-05 13:21:52,389 | INFO     | time since job start (85985s) is within the limit (172800.0s)
[2025-12-05 08:22:38] 2025-12-05 13:21:52,495 | INFO     | monitor loop #4645: job 0:6898271953 is in state 'finished'
[2025-12-05 08:22:38] 2025-12-05 13:21:52,495 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 08:22:38] 2025-12-05 13:21:54,396 | INFO     | time since job start (85987s) is within the limit (172800.0s)
[2025-12-05 08:22:38] 2025-12-05 13:21:55,005 | INFO     | monitor loop #4646: job 0:6898271953 is in state 'finished'
[2025-12-05 08:22:38] 2025-12-05 13:21:55,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 08:22:38] 2025-12-05 13:21:56,405 | INFO     | time since job start (85989s) is within the limit (172800.0s)
[2025-12-05 08:22:38] 2025-12-05 13:21:57,513 | INFO     | monitor loop #4647: job 0:6898271953 is in state 'finished'
[2025-12-05 08:22:38] 2025-12-05 13:21:57,513 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 08:22:38] 2025-12-05 13:21:58,426 | INFO     | time since job start (85991s) is within the limit (172800.0s)
[2025-12-05 08:22:38] 2025-12-05 13:21:58,927 | INFO     | CPU arch script returned: x86-64-v4
[2025-12-05 08:22:38] 2025-12-05 13:21:58,988 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2664.906593749999
[2025-12-05 08:22:38] 2025-12-05 13:21:59,091 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6898271953/memory_monitor_summary.json (trf name=prmon)
[2025-12-05 08:22:38] 2025-12-05 13:21:59,092 | INFO     | extracted standard info from prmon json
[2025-12-05 08:22:38] 2025-12-05 13:21:59,092 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 08:22:38] 2025-12-05 13:21:59,092 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 08:22:38] 2025-12-05 13:21:59,217 | INFO     | fitting pss+swap vs Time
[2025-12-05 08:22:38] 2025-12-05 13:21:59,222 | INFO     | sum of square deviations: 867351163293.469
[2025-12-05 08:22:38] 2025-12-05 13:21:59,437 | INFO     | sum of deviations: 3301279224317.3555
[2025-12-05 08:22:38] 2025-12-05 13:21:59,437 | INFO     | mean x: 1764897903.7778566
[2025-12-05 08:22:38] 2025-12-05 13:21:59,437 | INFO     | mean y: 3102847.7423704755
[2025-12-05 08:22:38] 2025-12-05 13:21:59,438 | INFO     | intersect: -6714384865.837503
[2025-12-05 08:22:38] 2025-12-05 13:21:59,439 | INFO     | chi2: 13.316999605767185
[2025-12-05 08:22:38] 2025-12-05 13:21:59,450 | INFO     | sum of square deviations: 858150619897.6091
[2025-12-05 08:22:38] 2025-12-05 13:21:59,690 | INFO     | sum of deviations: 3815461876805.5757
[2025-12-05 08:22:38] 2025-12-05 13:21:59,691 | INFO     | mean x: 1764897751.284188
[2025-12-05 08:22:38] 2025-12-05 13:21:59,724 | INFO     | mean y: 3111368.863247863
[2025-12-05 08:22:38] 2025-12-05 13:21:59,724 | INFO     | intersect: -7843879509.367626
[2025-12-05 08:22:38] 2025-12-05 13:21:59,726 | INFO     | chi2: 10.029316022883494
[2025-12-05 08:22:38] 2025-12-05 13:21:59,726 | INFO     | current chi2=10.029316022883494 (change=24.687870242632552 %)
[2025-12-05 08:22:38] 2025-12-05 13:21:59,726 | INFO     | right removable region: 1403
[2025-12-05 08:22:38] 2025-12-05 13:21:59,733 | INFO     | sum of square deviations: 858149263260.7422
[2025-12-05 08:22:38] 2025-12-05 13:21:59,874 | INFO     | sum of deviations: 2873354120817.139
[2025-12-05 08:22:38] 2025-12-05 13:21:59,874 | INFO     | mean x: 1764898056.2827635
[2025-12-05 08:22:38] 2025-12-05 13:21:59,874 | INFO     | mean y: 3109934.448005698
[2025-12-05 08:22:38] 2025-12-05 13:21:59,874 | INFO     | intersect: -5906324845.665997
[2025-12-05 08:22:38] 2025-12-05 13:21:59,876 | INFO     | chi2: 11.107200104505202
[2025-12-05 08:22:38] 2025-12-05 13:21:59,877 | INFO     | current chi2=11.107200104505202 (change=16.59382418472842 %)
[2025-12-05 08:22:38] 2025-12-05 13:21:59,877 | INFO     | left removable region: 10
[2025-12-05 08:22:38] 2025-12-05 13:21:59,878 | INFO     | sum of square deviations: 838136848298.7904
[2025-12-05 08:22:38] 2025-12-05 13:22:00,083 | INFO     | monitor loop #4648: job 0:6898271953 is in state 'finished'
[2025-12-05 08:22:38] 2025-12-05 13:22:00,083 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 08:22:38] 2025-12-05 13:22:00,113 | INFO     | sum of deviations: 3343656199321.0776
[2025-12-05 08:22:38] 2025-12-05 13:22:00,113 | INFO     | mean x: 1764898025.7903805
[2025-12-05 08:22:38] 2025-12-05 13:22:00,113 | INFO     | mean y: 3122514.8119167266
[2025-12-05 08:22:38] 2025-12-05 13:22:00,113 | INFO     | intersect: -7037747048.531507
[2025-12-05 08:22:38] 2025-12-05 13:22:00,119 | INFO     | chi2: 7.093395548065462
[2025-12-05 08:22:38] 2025-12-05 13:22:00,121 | INFO     | current memory leak: 3.99 B/s (using 1393 data points, chi2=7.09)
[2025-12-05 08:22:38] 2025-12-05 13:22:00,123 | INFO     | could have reported an average CPU frequency of 2697 MHz (50 samples)
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | ..............................
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | . Timing measurements:
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | . get job = 0 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | . initial setup = 2 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | . payload setup = 7 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | . stage-in = 0 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | . payload execution = 85914 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,124 | INFO     | . stage-out = 10 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,125 | INFO     | . log creation = 2 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,125 | INFO     | ..............................
[2025-12-05 08:22:38] 2025-12-05 13:22:00,860 | INFO     | 
[2025-12-05 08:22:38] 2025-12-05 13:22:00,860 | INFO     | job summary report
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | --------------------------------------------------
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | PanDA job id: 6898271953
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | task id: 47556161
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | errors: (none)
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | pilot state: finished 
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | transexitcode: 0
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | exeerrorcode: 0
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | exeerrordiag: 
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | exitcode: 0
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | exitmsg: OK
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | cpuconsumptiontime: 272690 s
[2025-12-05 08:22:38] 2025-12-05 13:22:00,861 | INFO     | nevents: 1000
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | neventsw: 0
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | pid: 2647048
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | pgrp: 2647048
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | corecount: 9
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | event service: False
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | sizes: {0: 2283487, 1: 2284343, 6: 2284605, 12: 2284633, 85926: 2348297, 85927: 2348296, 85938: 2357502, 85940: 2357558, 85977: 2357804}
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | --------------------------------------------------
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | 
[2025-12-05 08:22:38] 2025-12-05 13:22:00,862 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-12-05 08:22:38] 2025-12-05 13:22:00,918 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | job 6898271953 has completed (purged errors)
[2025-12-05 08:22:38] 2025-12-05 13:22:00,920 | INFO     | overall cleanup function is called
[2025-12-05 08:22:38] 2025-12-05 13:22:01,575 | INFO     | PID=2628542 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 08:22:38] 2025-12-05 13:22:01,576 | INFO     | .. there are 36 such processes running
[2025-12-05 08:22:38] 2025-12-05 13:22:02,006 | INFO     | --- collectZombieJob: --- 10, [2647048]
[2025-12-05 08:22:38] 2025-12-05 13:22:02,006 | INFO     | zombie collector waiting for pid 2647048
[2025-12-05 08:22:38] 2025-12-05 13:22:02,006 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 08:22:38] 2025-12-05 13:22:02,006 | INFO     | collected zombie processes
[2025-12-05 08:22:38] 2025-12-05 13:22:02,007 | INFO     | will attempt to kill all subprocesses of pid=2647048
[2025-12-05 08:22:38] 2025-12-05 13:22:03,254 | INFO     | process IDs to be killed: [2647048] (in reverse order)
[2025-12-05 08:22:38] 2025-12-05 13:22:03,480 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 08:22:38] 2025-12-05 13:22:03,481 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 08:22:38] 2025-12-05 13:22:03,520 | INFO     | did not find any defunct processes belonging to 2647048
[2025-12-05 08:22:38] 2025-12-05 13:22:03,543 | INFO     | did not find any defunct processes belonging to 2647048
[2025-12-05 08:22:38] 2025-12-05 13:22:03,546 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 08:22:38] 2025-12-05 13:22:03,546 | INFO     | ready for new job
[2025-12-05 08:22:38] 2025-12-05 13:22:03,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 08:22:38] 2025-12-05 13:22:03,575 | INFO     | ***************************************
[2025-12-05 08:22:38] 2025-12-05 13:22:03,576 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 08:22:38] 2025-12-05 13:22:03,576 | INFO     | ***************************************
[2025-12-05 08:22:38] 2025-12-05 13:22:03,576 | INFO     | 
[2025-12-05 08:22:38] 2025-12-05 13:22:03,610 | INFO     | architecture information:
[2025-12-05 08:22:38] 2025-12-05 13:22:03,645 | INFO     | executing command: cat /etc/os-release
[2025-12-05 08:22:38] 2025-12-05 13:22:03,670 | INFO     | cat /etc/os-release:
[2025-12-05 08:22:38] NAME="CentOS Linux"
[2025-12-05 08:22:38] VERSION="7 (Core)"
[2025-12-05 08:22:38] ID="centos"
[2025-12-05 08:22:38] ID_LIKE="rhel fedora"
[2025-12-05 08:22:38] VERSION_ID="7"
[2025-12-05 08:22:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 08:22:38] ANSI_COLOR="0;31"
[2025-12-05 08:22:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 08:22:38] HOME_URL="https://www.centos.org/"
[2025-12-05 08:22:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 08:22:38] 
[2025-12-05 08:22:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 08:22:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 08:22:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 08:22:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 08:22:38] 
[2025-12-05 08:22:38] 2025-12-05 13:22:03,670 | INFO     | ***************************************
[2025-12-05 08:22:38] 2025-12-05 13:22:04,173 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-12-05 08:22:38] 2025-12-05 13:22:04,268 | INFO     | sufficient remaining disk space (91106574336 B)
[2025-12-05 08:22:38] 2025-12-05 13:22:04,269 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 08:22:38] 2025-12-05 13:22:04,269 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 08:22:38] 2025-12-05 13:22:04,269 | INFO     | update_server=False
[2025-12-05 08:22:38] 2025-12-05 13:22:04,269 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 08:22:38] 2025-12-05 13:22:04,270 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 08:22:38] 2025-12-05 13:22:04,270 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 08:22:38] 2025-12-05 13:22:04,270 | INFO     | aborting loop
[2025-12-05 08:22:38] 2025-12-05 13:22:04,378 | INFO     | all data control threads have been joined
[2025-12-05 08:22:38] 2025-12-05 13:22:04,819 | INFO     | all payload control threads have been joined
[2025-12-05 08:22:38] 2025-12-05 13:22:05,275 | INFO     | [job] retrieve thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:05,293 | INFO     | [job] job monitor thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:05,398 | INFO     | [data] control thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:05,410 | INFO     | [payload] validate_post thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:05,722 | INFO     | all job control threads have been joined
[2025-12-05 08:22:38] 2025-12-05 13:22:05,825 | INFO     | [payload] control thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:05,844 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:05,889 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 08:22:38] 2025-12-05 13:22:06,209 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,290 | INFO     | [data] copytool_out thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,319 | INFO     | [data] copytool_in thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,351 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 08:22:38] 2025-12-05 13:22:06,717 | INFO     | [job] validate thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,728 | INFO     | [job] control thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,729 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,749 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,776 | INFO     | [payload] failed_post thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:06,895 | INFO     | [job] queue monitor thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:10,377 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 08:22:38] 2025-12-05 13:22:24,581 | INFO     | [monitor] cgroup control has ended
[2025-12-05 08:22:38] 2025-12-05 13:22:25,616 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139687485851456)>', '<ExcThread(monitor, started 139686991341312)>']
[2025-12-05 08:22:38] 2025-12-05 13:22:30,655 | INFO     | all workflow threads have been joined
[2025-12-05 08:22:38] 2025-12-05 13:22:30,655 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 08:22:38] 2025-12-05 13:22:30,656 | INFO     | traces error code: 0
[2025-12-05 08:22:38] 2025-12-05 13:22:30,656 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 08:22:38] 2025-12-05 13:22:37,000 | INFO     | PID=2628542 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 08:22:38] 2025-12-05 13:22:37,001 | INFO     | .. there are 36 such processes running
[2025-12-05 08:22:38] 2025-12-05 13:22:37,001 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 08:22:38] 2025-12-05 13:22:37,001 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 08:22:38] 2025-12-05 13:22:37,001 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 08:22:38] 2025-12-05 13:22:37,001 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 08:22:38] 2025-12-05 13:22:37,001 | CRITICAL | thread 'MainThread' is not alive
[2025-12-05 08:22:38] 2025-12-05 13:22:37,001 | INFO     | [monitor] control thread has ended
[2025-12-05 08:22:38] 2025-12-05 13:22:37,183 [wrapper] ==== pilot stdout END ====
[2025-12-05 08:22:38] 2025-12-05 13:22:37,193 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 08:22:38] 2025-12-05 13:22:37,217 [wrapper] pilotpid: 2628542
[2025-12-05 08:22:38] 2025-12-05 13:22:37,239 [wrapper] Pilot exit status: 0
[2025-12-05 08:22:38] 2025-12-05 13:22:37,365 [wrapper] pandaids: 6898271953
[2025-12-05 08:22:38] 2025-12-05 13:22:37,580 [wrapper] cleanup supervisor_pilot   18834 2628545
[2025-12-05 08:22:38] 2025-12-05 13:22:37,608 [wrapper] Test setup, not cleaning
[2025-12-05 08:22:38] 2025-12-05 13:22:37,620 [wrapper] apfmon messages muted
[2025-12-05 08:22:38] 2025-12-05 13:22:37,641 [wrapper] ==== wrapper stdout END ====
[2025-12-05 08:22:38] 2025-12-05 13:22:37,666 [wrapper] ==== wrapper stderr END ====
[2025-12-05 08:22:38]  *** Error codes and diagnostics ***
[2025-12-05 08:22:38]     "exeErrorCode": 0,
[2025-12-05 08:22:38]     "exeErrorDiag": "",
[2025-12-05 08:22:38]     "pilotErrorCode": 0,
[2025-12-05 08:22:38]     "pilotErrorDiag": "",
[2025-12-05 08:22:38]  *** Listing of results directory ***
[2025-12-05 08:22:38] total 1320412
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-12-05 08:22:38] -rwx------. 1 boincer umatlas     36292 Nov 26 10:35 runpilot2-wrapper.sh
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:35 queuedata.json
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas       100 Dec  4 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 08:22:38] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  4 08:28 run_atlas
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas       105 Dec  4 08:28 job.xml
[2025-12-05 08:22:38] -rw-r--r--. 2 boincer umatlas 407569287 Dec  4 08:28 EVNT.47483658._002547.pool.root.1
[2025-12-05 08:22:38] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-05 08:22:38] drwxrwx--x. 2 boincer umatlas      4096 Dec  4 08:28 shared
[2025-12-05 08:22:38] -rw-r--r--. 2 boincer umatlas    590101 Dec  4 08:28 input.tar.gz
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas         0 Dec  4 08:28 boinc_lockfile
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas      2786 Dec  4 08:28 pandaJob.out
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas        57 Dec  4 08:28 setup.sh.local
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas    985564 Dec  4 08:28 agis_schedconf.cvmfs.json
[2025-12-05 08:22:38] drwx------. 5 boincer umatlas      4096 Dec  4 08:28 pilot3
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas       533 Dec  5 07:54 boinc_task_state.xml
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas 915345859 Dec  5 08:19 HITS.47556161._005300.pool.root.1
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas      6879 Dec  5 08:19 init_data.xml
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas      1059 Dec  5 08:21 memory_monitor_summary.json
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas   1516240 Dec  5 08:21 agis_ddmendpoints.agis.ALL.json
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas   2490158 Dec  5 08:21 log.47556161._005300.job.log.tgz.1
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas      8622 Dec  5 08:22 heartbeat.json
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas        95 Dec  5 08:22 pilot_heartbeat.json
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas       893 Dec  5 08:22 pilotlog.txt
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas      8192 Dec  5 08:22 boinc_mmap_file
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas  10149065 Dec  5 08:22 log.47556161._005300.job.log.1
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas       353 Dec  5 08:22 output.list
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas       620 Dec  5 08:22 runtime_log
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas  12656640 Dec  5 08:22 result.tar.gz
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas      9348 Dec  5 08:22 runtime_log.err
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas       660 Dec  5 08:22 MnOKDmCjWi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmV5MKDm5Ck0qm.diag
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas        29 Dec  5 08:22 wrapper_checkpoint.txt
[2025-12-05 08:22:38] -rw-r--r--. 1 boincer umatlas     21843 Dec  5 08:22 stderr.txt
[2025-12-05 08:22:38] HITS file was successfully produced:
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas 915345859 Dec  5 08:19 shared/HITS.pool.root.1
[2025-12-05 08:22:38]  *** Contents of shared directory: ***
[2025-12-05 08:22:38] total 1304880
[2025-12-05 08:22:38] -rw-r--r--. 2 boincer umatlas 407569287 Dec  4 08:28 ATLAS.root_0
[2025-12-05 08:22:38] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-05 08:22:38] -rw-r--r--. 2 boincer umatlas    590101 Dec  4 08:28 input.tar.gz
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas 915345859 Dec  5 08:19 HITS.pool.root.1
[2025-12-05 08:22:38] -rw-------. 1 boincer umatlas  12656640 Dec  5 08:22 result.tar.gz
08:22:40 (2613675): run_atlas exited; CPU time 276452.606513
08:22:40 (2613675): called boinc_finish(0)

</stderr_txt>
]]>

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