Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:28:09 (2589075): wrapper (7.7.26015): starting
08:28:09 (2589075): wrapper: running run_atlas (--nthreads 9)
[2025-12-04 08:28:09] Arguments: --nthreads 9
[2025-12-04 08:28:09] Threads: 9
[2025-12-04 08:28:09] Checking for CVMFS
[2025-12-04 08:28:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 08:28:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 08:28:09] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 08:28:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 08:28:09] 2.13.3.0 11836 40150 380208 153638 0 248 26216321 32935937 36157 16776704 0 200462103 99.545 224103310 33342 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-04 08:28:09] CVMFS is ok
[2025-12-04 08:28:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 08:28:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 08:28:09] Further information can be found at the LHC@home message board.
[2025-12-04 08:28:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 08:28:09] Checking for apptainer binary...
[2025-12-04 08:28:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 08:28:09] Running /usr/bin/apptainer --version
[2025-12-04 08:28:09] apptainer version 1.4.4-1.el9
[2025-12-04 08:28:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 08:28:09] c6-2-11-1.aglt2.org
[2025-12-04 08:28:09] apptainer works
[2025-12-04 08:28:09] Set ATHENA_PROC_NUMBER=9
[2025-12-04 08:28:09] Set ATHENA_CORE_NUMBER=9
[2025-12-04 08:28:09] Starting ATLAS job with PandaID=6898271379
[2025-12-04 08:28:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 08:21:21]  *** The last 200 lines of the pilot log: ***
[2025-12-05 08:21:21] 2025-12-05 13:19:50,950 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 08:21:21] 2025-12-05 13:19:50,974 | INFO     | fitting pss+swap vs Time
[2025-12-05 08:21:21] 2025-12-05 13:19:50,978 | INFO     | sum of square deviations: 863664608425.4147
[2025-12-05 08:21:21] 2025-12-05 13:19:51,025 | INFO     | sum of deviations: 3398257806693.0537
[2025-12-05 08:21:21] 2025-12-05 13:19:51,025 | INFO     | mean x: 1764897816.7036247
[2025-12-05 08:21:21] 2025-12-05 13:19:51,025 | INFO     | mean y: 3113116.184790334
[2025-12-05 08:21:21] 2025-12-05 13:19:51,025 | INFO     | intersect: -6941223522.273823
[2025-12-05 08:21:21] 2025-12-05 13:19:51,027 | INFO     | chi2: 13.14256796963614
[2025-12-05 08:21:21] 2025-12-05 13:19:51,029 | INFO     | sum of square deviations: 854490181418.3477
[2025-12-05 08:21:21] 2025-12-05 13:19:51,074 | INFO     | sum of deviations: 3932601817924.903
[2025-12-05 08:21:21] 2025-12-05 13:19:51,075 | INFO     | mean x: 1764897664.2097003
[2025-12-05 08:21:21] 2025-12-05 13:19:51,075 | INFO     | mean y: 3121996.7860199716
[2025-12-05 08:21:21] 2025-12-05 13:19:51,075 | INFO     | intersect: -8119428634.751819
[2025-12-05 08:21:21] 2025-12-05 13:19:51,077 | INFO     | chi2: 9.628298592493078
[2025-12-05 08:21:21] 2025-12-05 13:19:51,077 | INFO     | current chi2=9.628298592493078 (change=26.73959446329085 %)
[2025-12-05 08:21:21] 2025-12-05 13:19:51,079 | INFO     | sum of square deviations: 845380964936.1799
[2025-12-05 08:21:21] 2025-12-05 13:19:51,144 | INFO     | sum of deviations: 4495817276032.849
[2025-12-05 08:21:21] 2025-12-05 13:19:51,145 | INFO     | mean x: 1764897511.7158196
[2025-12-05 08:21:21] 2025-12-05 13:19:51,145 | INFO     | mean y: 3131426.672154617
[2025-12-05 08:21:21] 2025-12-05 13:19:51,145 | INFO     | intersect: -9382763279.625587
[2025-12-05 08:21:21] 2025-12-05 13:19:51,147 | INFO     | chi2: 5.833029871818906
[2025-12-05 08:21:21] 2025-12-05 13:19:51,147 | INFO     | current chi2=5.833029871818906 (change=39.417854402991196 %)
[2025-12-05 08:21:21] 2025-12-05 13:19:51,150 | INFO     | sum of square deviations: 836336641445.8512
[2025-12-05 08:21:21] 2025-12-05 13:19:51,261 | INFO     | sum of deviations: 4947561545135.877
[2025-12-05 08:21:21] 2025-12-05 13:19:51,262 | INFO     | mean x: 1764897359.2212644
[2025-12-05 08:21:21] 2025-12-05 13:19:51,262 | INFO     | mean y: 3139039.6530172415
[2025-12-05 08:21:21] 2025-12-05 13:19:51,262 | INFO     | intersect: -10437558967.430939
[2025-12-05 08:21:21] 2025-12-05 13:19:51,264 | INFO     | chi2: 3.11059033771307
[2025-12-05 08:21:21] 2025-12-05 13:19:51,265 | INFO     | current chi2=3.11059033771307 (change=46.672820025468184 %)
[2025-12-05 08:21:21] 2025-12-05 13:19:51,267 | INFO     | sum of square deviations: 827357063355.4371
[2025-12-05 08:21:21] 2025-12-05 13:19:51,363 | INFO     | sum of deviations: 5138329234874.188
[2025-12-05 08:21:21] 2025-12-05 13:19:51,363 | INFO     | mean x: 1764897206.7267485
[2025-12-05 08:21:21] 2025-12-05 13:19:51,364 | INFO     | mean y: 3142278.7577505405
[2025-12-05 08:21:21] 2025-12-05 13:19:51,364 | INFO     | intersect: -10957811964.01266
[2025-12-05 08:21:21] 2025-12-05 13:19:51,366 | INFO     | chi2: 2.5246891619567897
[2025-12-05 08:21:21] 2025-12-05 13:19:51,367 | INFO     | current chi2=2.5246891619567897 (change=18.83569072573663 %)
[2025-12-05 08:21:21] 2025-12-05 13:19:51,367 | INFO     | right removable region: 1386
[2025-12-05 08:21:21] 2025-12-05 13:19:51,412 | INFO     | sum of square deviations: 854489233114.8397
[2025-12-05 08:21:21] 2025-12-05 13:19:51,542 | INFO     | sum of deviations: 3015542481396.789
[2025-12-05 08:21:21] 2025-12-05 13:19:51,542 | INFO     | mean x: 1764897969.2054207
[2025-12-05 08:21:21] 2025-12-05 13:19:51,542 | INFO     | mean y: 3119470.712553495
[2025-12-05 08:21:21] 2025-12-05 13:19:51,542 | INFO     | intersect: -6225308688.726405
[2025-12-05 08:21:21] 2025-12-05 13:19:51,551 | INFO     | chi2: 11.221155541232099
[2025-12-05 08:21:21] 2025-12-05 13:19:51,551 | INFO     | current chi2=11.221155541232099 (change=14.619764058615987 %)
[2025-12-05 08:21:21] 2025-12-05 13:19:51,551 | INFO     | left removable region: 10
[2025-12-05 08:21:21] 2025-12-05 13:19:51,553 | INFO     | sum of square deviations: 807826943677.4299
[2025-12-05 08:21:21] 2025-12-05 13:19:51,592 | INFO     | sum of deviations: 4627744960089.784
[2025-12-05 08:21:21] 2025-12-05 13:19:51,592 | INFO     | mean x: 1764897481.2296512
[2025-12-05 08:21:21] 2025-12-05 13:19:51,593 | INFO     | mean y: 3151604.760174419
[2025-12-05 08:21:21] 2025-12-05 13:19:51,593 | INFO     | intersect: -10107300253.474703
[2025-12-05 08:21:21] 2025-12-05 13:19:51,594 | INFO     | chi2: 0.4111666598401489
[2025-12-05 08:21:21] 2025-12-05 13:19:51,595 | INFO     | current memory leak: 5.73 B/s (using 1376 data points, chi2=0.41)
[2025-12-05 08:21:21] 2025-12-05 13:19:51,596 | INFO     | could have reported an average CPU frequency of 2693 MHz (50 samples)
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | ..............................
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . Timing measurements:
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . get job = 0 s
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . initial setup = 2 s
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . payload setup = 7 s
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . stage-in = 0 s
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . payload execution = 85817 s
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . stage-out = 9 s
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | . log creation = 2 s
[2025-12-05 08:21:21] 2025-12-05 13:19:51,597 | INFO     | ..............................
[2025-12-05 08:21:21] 2025-12-05 13:19:51,936 | INFO     | time since job start (85889s) is within the limit (172800.0s)
[2025-12-05 08:21:21] 2025-12-05 13:19:52,101 | INFO     | 
[2025-12-05 08:21:21] 2025-12-05 13:19:52,101 | INFO     | job summary report
[2025-12-05 08:21:21] 2025-12-05 13:19:52,101 | INFO     | --------------------------------------------------
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | PanDA job id: 6898271379
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | task id: 47556161
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | errors: (none)
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | pilot state: finished 
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | transexitcode: 0
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | exeerrorcode: 0
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | exeerrordiag: 
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | exitcode: 0
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | exitmsg: OK
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | cpuconsumptiontime: 273313 s
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | nevents: 1000
[2025-12-05 08:21:21] 2025-12-05 13:19:52,102 | INFO     | neventsw: 0
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | pid: 2630712
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | pgrp: 2630712
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | corecount: 9
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | event service: False
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | sizes: {0: 2284315, 5: 2284577, 11: 2284633, 85827: 2347704, 85838: 2356698, 85840: 2356754, 85873: 2357128}
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | --------------------------------------------------
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | 
[2025-12-05 08:21:21] 2025-12-05 13:19:52,103 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-05 08:21:21] 2025-12-05 13:19:52,240 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,241 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,241 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,241 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,241 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,241 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,241 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,243 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 08:21:21] 2025-12-05 13:19:52,243 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,243 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 08:21:21] 2025-12-05 13:19:52,243 | INFO     | job 6898271379 has completed (purged errors)
[2025-12-05 08:21:21] 2025-12-05 13:19:52,243 | INFO     | overall cleanup function is called
[2025-12-05 08:21:21] 2025-12-05 13:19:53,281 | INFO     | --- collectZombieJob: --- 10, [2630712]
[2025-12-05 08:21:21] 2025-12-05 13:19:53,281 | INFO     | zombie collector waiting for pid 2630712
[2025-12-05 08:21:21] 2025-12-05 13:19:53,281 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 08:21:21] 2025-12-05 13:19:53,281 | INFO     | collected zombie processes
[2025-12-05 08:21:21] 2025-12-05 13:19:53,281 | INFO     | will attempt to kill all subprocesses of pid=2630712
[2025-12-05 08:21:21] 2025-12-05 13:19:54,848 | INFO     | process IDs to be killed: [2630712] (in reverse order)
[2025-12-05 08:21:21] 2025-12-05 13:19:55,011 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 08:21:21] 2025-12-05 13:19:55,011 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 08:21:21] 2025-12-05 13:19:55,035 | INFO     | did not find any defunct processes belonging to 2630712
[2025-12-05 08:21:21] 2025-12-05 13:19:55,055 | INFO     | did not find any defunct processes belonging to 2630712
[2025-12-05 08:21:21] 2025-12-05 13:19:55,057 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 08:21:21] 2025-12-05 13:19:55,057 | INFO     | ready for new job
[2025-12-05 08:21:21] 2025-12-05 13:19:55,057 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 08:21:21] 2025-12-05 13:19:55,063 | INFO     | ***************************************
[2025-12-05 08:21:21] 2025-12-05 13:19:55,063 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 08:21:21] 2025-12-05 13:19:55,064 | INFO     | ***************************************
[2025-12-05 08:21:21] 2025-12-05 13:19:55,064 | INFO     | 
[2025-12-05 08:21:21] 2025-12-05 13:19:55,070 | INFO     | architecture information:
[2025-12-05 08:21:21] 2025-12-05 13:19:55,070 | INFO     | executing command: cat /etc/os-release
[2025-12-05 08:21:21] 2025-12-05 13:19:55,095 | INFO     | cat /etc/os-release:
[2025-12-05 08:21:21] NAME="CentOS Linux"
[2025-12-05 08:21:21] VERSION="7 (Core)"
[2025-12-05 08:21:21] ID="centos"
[2025-12-05 08:21:21] ID_LIKE="rhel fedora"
[2025-12-05 08:21:21] VERSION_ID="7"
[2025-12-05 08:21:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 08:21:21] ANSI_COLOR="0;31"
[2025-12-05 08:21:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 08:21:21] HOME_URL="https://www.centos.org/"
[2025-12-05 08:21:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 08:21:21] 
[2025-12-05 08:21:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 08:21:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 08:21:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 08:21:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 08:21:21] 
[2025-12-05 08:21:21] 2025-12-05 13:19:55,095 | INFO     | ***************************************
[2025-12-05 08:21:21] 2025-12-05 13:19:55,598 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-05 08:21:21] 2025-12-05 13:19:55,678 | INFO     | sufficient remaining disk space (89745522688 B)
[2025-12-05 08:21:21] 2025-12-05 13:19:55,679 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 08:21:21] 2025-12-05 13:19:55,679 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 08:21:21] 2025-12-05 13:19:55,679 | INFO     | update_server=False
[2025-12-05 08:21:21] 2025-12-05 13:19:55,679 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 08:21:21] 2025-12-05 13:19:55,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 08:21:21] 2025-12-05 13:19:55,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 08:21:21] 2025-12-05 13:19:55,975 | INFO     | aborting loop
[2025-12-05 08:21:21] 2025-12-05 13:19:56,134 | INFO     | all payload control threads have been joined
[2025-12-05 08:21:21] 2025-12-05 13:19:56,556 | INFO     | all data control threads have been joined
[2025-12-05 08:21:21] 2025-12-05 13:19:56,685 | INFO     | [job] retrieve thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:56,699 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:56,712 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 08:21:21] 2025-12-05 13:19:56,984 | INFO     | [job] job monitor thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,008 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,009 | INFO     | [data] copytool_in thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,014 | INFO     | [job] validate thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,125 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 08:21:21] 2025-12-05 13:19:57,140 | INFO     | [payload] control thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,174 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,245 | INFO     | all job control threads have been joined
[2025-12-05 08:21:21] 2025-12-05 13:19:57,562 | INFO     | [data] control thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,637 | INFO     | [payload] validate_post thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,687 | INFO     | [data] copytool_out thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,893 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:57,920 | INFO     | [payload] failed_post thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:58,131 | INFO     | [job] queue monitor thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:19:58,251 | INFO     | [job] control thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:20:00,724 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 08:21:21] 2025-12-05 13:20:27,174 | INFO     | PID=2602998 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 08:21:21] 2025-12-05 13:20:27,175 | INFO     | .. there are 37 such processes running
[2025-12-05 08:21:21] 2025-12-05 13:20:27,198 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 08:21:21] 2025-12-05 13:20:27,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 08:21:21] 2025-12-05 13:20:27,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 08:21:21] 2025-12-05 13:20:53,539 | INFO     | [monitor] cgroup control has ended
[2025-12-05 08:21:21] 2025-12-05 13:20:55,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766188480320)>', '<ExcThread(monitor, started 139765466781440)>']
[2025-12-05 08:21:21] 2025-12-05 13:20:55,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 08:21:21] 2025-12-05 13:20:55,435 | INFO     | [monitor] control thread has ended
[2025-12-05 08:21:21] 2025-12-05 13:21:00,041 | INFO     | all workflow threads have been joined
[2025-12-05 08:21:21] 2025-12-05 13:21:00,041 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 08:21:21] 2025-12-05 13:21:00,042 | INFO     | traces error code: 0
[2025-12-05 08:21:21] 2025-12-05 13:21:00,042 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 08:21:21] 2025-12-05 13:21:01,214 [wrapper] ==== pilot stdout END ====
[2025-12-05 08:21:21] 2025-12-05 13:21:01,229 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 08:21:21] 2025-12-05 13:21:01,235 [wrapper] pilotpid: 2602998
[2025-12-05 08:21:21] 2025-12-05 13:21:01,248 [wrapper] Pilot exit status: 0
[2025-12-05 08:21:21] 2025-12-05 13:21:01,375 [wrapper] pandaids: 6898271379
[2025-12-05 08:21:21] 2025-12-05 13:21:01,806 [wrapper] cleanup supervisor_pilot   16794 2602999
[2025-12-05 08:21:21] 2025-12-05 13:21:01,827 [wrapper] Test setup, not cleaning
[2025-12-05 08:21:21] 2025-12-05 13:21:01,835 [wrapper] apfmon messages muted
[2025-12-05 08:21:21] 2025-12-05 13:21:01,838 [wrapper] ==== wrapper stdout END ====
[2025-12-05 08:21:21] 2025-12-05 13:21:01,844 [wrapper] ==== wrapper stderr END ====
[2025-12-05 08:21:21]  *** Error codes and diagnostics ***
[2025-12-05 08:21:21]     "exeErrorCode": 0,
[2025-12-05 08:21:21]     "exeErrorDiag": "",
[2025-12-05 08:21:21]     "pilotErrorCode": 0,
[2025-12-05 08:21:21]     "pilotErrorDiag": "",
[2025-12-05 08:21:21]  *** Listing of results directory ***
[2025-12-05 08:21:21] total 1321752
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:05 queuedata.json
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-12-05 08:21:21] -rwx------. 1 boincer umatlas     36292 Nov 26 10:06 runpilot2-wrapper.sh
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas       100 Dec  4 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 08:21:21] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  4 08:28 run_atlas
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas       105 Dec  4 08:28 job.xml
[2025-12-05 08:21:21] -rw-r--r--. 2 boincer umatlas 409282572 Dec  4 08:28 EVNT.47483658._002531.pool.root.1
[2025-12-05 08:21:21] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-05 08:21:21] drwxrwx--x. 2 boincer umatlas      4096 Dec  4 08:28 shared
[2025-12-05 08:21:21] -rw-r--r--. 2 boincer umatlas    590105 Dec  4 08:28 input.tar.gz
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas         0 Dec  4 08:28 boinc_lockfile
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas      2786 Dec  4 08:28 pandaJob.out
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas        57 Dec  4 08:28 setup.sh.local
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas    985564 Dec  4 08:28 agis_schedconf.cvmfs.json
[2025-12-05 08:21:21] drwx------. 5 boincer umatlas      4096 Dec  4 08:28 pilot3
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas       533 Dec  5 07:53 boinc_task_state.xml
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas 913881080 Dec  5 08:17 HITS.47556161._005140.pool.root.1
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas      1059 Dec  5 08:19 memory_monitor_summary.json
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas   1516240 Dec  5 08:19 agis_ddmendpoints.agis.ALL.json
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas   2532189 Dec  5 08:19 log.47556161._005140.job.log.tgz.1
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas      7948 Dec  5 08:19 heartbeat.json
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas      6879 Dec  5 08:19 init_data.xml
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas        95 Dec  5 08:20 pilot_heartbeat.json
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas      4824 Dec  5 08:21 pilotlog.txt
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas  10671957 Dec  5 08:21 log.47556161._005140.job.log.1
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas       353 Dec  5 08:21 output.list
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas       620 Dec  5 08:21 runtime_log
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas  13219840 Dec  5 08:21 result.tar.gz
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas       660 Dec  5 08:21 znbKDmzGWi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmeyJKDmbtIpgm.diag
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas      9348 Dec  5 08:21 runtime_log.err
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas      8192 Dec  5 08:21 boinc_mmap_file
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas     12954 Dec  5 08:21 stderr.txt
[2025-12-05 08:21:21] -rw-r--r--. 1 boincer umatlas        29 Dec  5 08:21 wrapper_checkpoint.txt
[2025-12-05 08:21:21] HITS file was successfully produced:
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas 913881080 Dec  5 08:17 shared/HITS.pool.root.1
[2025-12-05 08:21:21]  *** Contents of shared directory: ***
[2025-12-05 08:21:21] total 1305672
[2025-12-05 08:21:21] -rw-r--r--. 2 boincer umatlas 409282572 Dec  4 08:28 ATLAS.root_0
[2025-12-05 08:21:21] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-05 08:21:21] -rw-r--r--. 2 boincer umatlas    590105 Dec  4 08:28 input.tar.gz
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas 913881080 Dec  5 08:17 HITS.pool.root.1
[2025-12-05 08:21:21] -rw-------. 1 boincer umatlas  13219840 Dec  5 08:21 result.tar.gz
08:21:23 (2589075): run_atlas exited; CPU time 276556.801524
08:21:23 (2589075): called boinc_finish(0)

</stderr_txt>
]]>

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