Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:28:17 (895782): wrapper (7.7.26015): starting
08:28:17 (895782): wrapper: running run_atlas (--nthreads 8)
[2025-12-04 08:28:17] Arguments: --nthreads 8
[2025-12-04 08:28:17] Threads: 8
[2025-12-04 08:28:17] Checking for CVMFS
[2025-12-04 08:28:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 08:28:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 08:28:17] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 08:28:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 08:28:18] 2.13.3.0 12763 41584 249452 153638 3 385 30026877 40960000 30777 16776704 0 339227953 99.715 239312414 4358 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-04 08:28:18] CVMFS is ok
[2025-12-04 08:28:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 08:28:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 08:28:18] Further information can be found at the LHC@home message board.
[2025-12-04 08:28:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 08:28:18] Checking for apptainer binary...
[2025-12-04 08:28:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 08:28:18] Running /usr/bin/apptainer --version
[2025-12-04 08:28:18] apptainer version 1.4.4-1.el9
[2025-12-04 08:28:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 08:28:18] c7-2-17.aglt2.org
[2025-12-04 08:28:18] apptainer works
[2025-12-04 08:28:18] Set ATHENA_PROC_NUMBER=8
[2025-12-04 08:28:18] Set ATHENA_CORE_NUMBER=8
[2025-12-04 08:28:18] Starting ATLAS job with PandaID=6898362923
[2025-12-04 08:28:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-04 23:02:22]  *** The last 200 lines of the pilot log: ***
[2025-12-04 23:02:22] 2025-12-05 04:01:40,028 | INFO     | monitor loop #3182: job 0:6898362923 is in state 'finished'
[2025-12-04 23:02:22] 2025-12-05 04:01:40,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-04 23:02:22] 2025-12-05 04:01:40,919 | INFO     | time since job start (52375s) is within the limit (172800.0s)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,149 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-04 23:02:22] 2025-12-05 04:01:41,166 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3268.527229166666
[2025-12-04 23:02:22] 2025-12-05 04:01:41,214 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6898362923/memory_monitor_summary.json (trf name=prmon)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,215 | INFO     | extracted standard info from prmon json
[2025-12-04 23:02:22] 2025-12-05 04:01:41,215 | INFO     | extracted standard memory fields from prmon json
[2025-12-04 23:02:22] 2025-12-05 04:01:41,215 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-04 23:02:22] 2025-12-05 04:01:41,265 | INFO     | fitting pss+swap vs Time
[2025-12-04 23:02:22] 2025-12-05 04:01:41,266 | INFO     | sum of square deviations: 195849920665.8833
[2025-12-04 23:02:22] 2025-12-05 04:01:41,314 | INFO     | sum of deviations: 1775230794085.6116
[2025-12-04 23:02:22] 2025-12-05 04:01:41,314 | INFO     | mean x: 1764881130.011655
[2025-12-04 23:02:22] 2025-12-05 04:01:41,314 | INFO     | mean y: 2823347.7389277387
[2025-12-04 23:02:22] 2025-12-05 04:01:41,314 | INFO     | intersect: -15994483770.10397
[2025-12-04 23:02:22] 2025-12-05 04:01:41,315 | INFO     | chi2: 5.985920026374026
[2025-12-04 23:02:22] 2025-12-05 04:01:41,326 | INFO     | sum of square deviations: 192446150086.8907
[2025-12-04 23:02:22] 2025-12-05 04:01:41,341 | INFO     | sum of deviations: 2063570941815.469
[2025-12-04 23:02:22] 2025-12-05 04:01:41,341 | INFO     | mean x: 1764880977.520516
[2025-12-04 23:02:22] 2025-12-05 04:01:41,341 | INFO     | mean y: 2836262.1160609615
[2025-12-04 23:02:22] 2025-12-05 04:01:41,341 | INFO     | intersect: -18921715355.72534
[2025-12-04 23:02:22] 2025-12-05 04:01:41,342 | INFO     | chi2: 2.6383552166501656
[2025-12-04 23:02:22] 2025-12-05 04:01:41,342 | INFO     | current chi2=2.6383552166501656 (change=55.923981526222455 %)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,343 | INFO     | sum of square deviations: 189081950974.37607
[2025-12-04 23:02:22] 2025-12-05 04:01:41,356 | INFO     | sum of deviations: 2132523559064.3318
[2025-12-04 23:02:22] 2025-12-05 04:01:41,357 | INFO     | mean x: 1764880825.0271227
[2025-12-04 23:02:22] 2025-12-05 04:01:41,357 | INFO     | mean y: 2839378.8985849055
[2025-12-04 23:02:22] 2025-12-05 04:01:41,357 | INFO     | intersect: -19902021550.00771
[2025-12-04 23:02:22] 2025-12-05 04:01:41,358 | INFO     | chi2: 2.191163224681531
[2025-12-04 23:02:22] 2025-12-05 04:01:41,358 | INFO     | current chi2=2.191163224681531 (change=16.949650643950047 %)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,358 | INFO     | right removable region: 847
[2025-12-04 23:02:22] 2025-12-05 04:01:41,358 | INFO     | sum of square deviations: 192445411012.9305
[2025-12-04 23:02:22] 2025-12-05 04:01:41,372 | INFO     | sum of deviations: 1550826138535.476
[2025-12-04 23:02:22] 2025-12-05 04:01:41,372 | INFO     | mean x: 1764881282.5193434
[2025-12-04 23:02:22] 2025-12-05 04:01:41,373 | INFO     | mean y: 2833386.062133646
[2025-12-04 23:02:22] 2025-12-05 04:01:41,373 | INFO     | intersect: -14219506392.978426
[2025-12-04 23:02:22] 2025-12-05 04:01:41,373 | INFO     | chi2: 3.9606488315643693
[2025-12-04 23:02:22] 2025-12-05 04:01:41,374 | INFO     | current chi2=3.9606488315643693 (change=33.833916689268996 %)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,374 | INFO     | sum of square deviations: 189080836939.618
[2025-12-04 23:02:22] 2025-12-05 04:01:41,391 | INFO     | sum of deviations: 1496114214747.85
[2025-12-04 23:02:22] 2025-12-05 04:01:41,391 | INFO     | mean x: 1764881435.0212264
[2025-12-04 23:02:22] 2025-12-05 04:01:41,391 | INFO     | mean y: 2835864.952830189
[2025-12-04 23:02:22] 2025-12-05 04:01:41,391 | INFO     | intersect: -13961901360.761164
[2025-12-04 23:02:22] 2025-12-05 04:01:41,392 | INFO     | chi2: 3.933668905129459
[2025-12-04 23:02:22] 2025-12-05 04:01:41,392 | INFO     | current chi2=3.933668905129459 (change=0.6811996615275268 %)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,392 | INFO     | left removable region: 20
[2025-12-04 23:02:22] 2025-12-05 04:01:41,393 | INFO     | sum of square deviations: 175378467917.22583
[2025-12-04 23:02:22] 2025-12-05 04:01:41,422 | INFO     | sum of deviations: 1767034405849.1677
[2025-12-04 23:02:22] 2025-12-05 04:01:41,422 | INFO     | mean x: 1764881404.5429263
[2025-12-04 23:02:22] 2025-12-05 04:01:41,422 | INFO     | mean y: 2855801.5586457076
[2025-12-04 23:02:22] 2025-12-05 04:01:41,422 | INFO     | intersect: -17779293860.86546
[2025-12-04 23:02:22] 2025-12-05 04:01:41,423 | INFO     | chi2: 0.11200449250609257
[2025-12-04 23:02:22] 2025-12-05 04:01:41,423 | INFO     | current memory leak: 10.08 B/s (using 827 data points, chi2=0.11)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,424 | INFO     | could have reported an average CPU frequency of 3199 MHz (32 samples)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,424 | INFO     | ..............................
[2025-12-04 23:02:22] 2025-12-05 04:01:41,424 | INFO     | . Timing measurements:
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | . get job = 0 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | . initial setup = 3 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | . payload setup = 14 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | . stage-in = 0 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | . payload execution = 52301 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | . stage-out = 4 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | . log creation = 0 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,425 | INFO     | ..............................
[2025-12-04 23:02:22] 2025-12-05 04:01:41,518 | INFO     | 
[2025-12-04 23:02:22] 2025-12-05 04:01:41,518 | INFO     | job summary report
[2025-12-04 23:02:22] 2025-12-05 04:01:41,518 | INFO     | --------------------------------------------------
[2025-12-04 23:02:22] 2025-12-05 04:01:41,518 | INFO     | PanDA job id: 6898362923
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | task id: 47556173
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | errors: (none)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | pilot state: finished 
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | transexitcode: 0
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | exeerrorcode: 0
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | exeerrordiag: 
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | exitcode: 0
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | exitmsg: OK
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | cpuconsumptiontime: 195573 s
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | nevents: 1000
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | neventsw: 0
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | pid: 936386
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | pgrp: 936386
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | corecount: 8
[2025-12-04 23:02:22] 2025-12-05 04:01:41,519 | INFO     | event service: False
[2025-12-04 23:02:22] 2025-12-05 04:01:41,520 | INFO     | sizes: {0: 2284088, 1: 2284343, 12: 2284343, 14: 2284633, 23: 2284661, 52319: 2333908, 52320: 2334035, 52326: 2343085, 52327: 2343141, 52340: 2343387}
[2025-12-04 23:02:22] 2025-12-05 04:01:41,520 | INFO     | --------------------------------------------------
[2025-12-04 23:02:22] 2025-12-05 04:01:41,520 | INFO     | 
[2025-12-04 23:02:22] 2025-12-05 04:01:41,520 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,590 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,591 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,592 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-04 23:02:22] 2025-12-05 04:01:41,592 | INFO     | job 6898362923 has completed (purged errors)
[2025-12-04 23:02:22] 2025-12-05 04:01:41,592 | INFO     | overall cleanup function is called
[2025-12-04 23:02:22] 2025-12-05 04:01:42,688 | INFO     | --- collectZombieJob: --- 10, [936386]
[2025-12-04 23:02:22] 2025-12-05 04:01:42,689 | INFO     | zombie collector waiting for pid 936386
[2025-12-04 23:02:22] 2025-12-05 04:01:42,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-04 23:02:22] 2025-12-05 04:01:42,689 | INFO     | collected zombie processes
[2025-12-04 23:02:22] 2025-12-05 04:01:42,689 | INFO     | will attempt to kill all subprocesses of pid=936386
[2025-12-04 23:02:22] 2025-12-05 04:01:43,600 | INFO     | process IDs to be killed: [936386] (in reverse order)
[2025-12-04 23:02:22] 2025-12-05 04:01:43,790 | WARNING  | found no corresponding commands to process id(s)
[2025-12-04 23:02:22] 2025-12-05 04:01:43,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-04 23:02:22] 2025-12-05 04:01:43,830 | INFO     | did not find any defunct processes belonging to 936386
[2025-12-04 23:02:22] 2025-12-05 04:01:43,909 | INFO     | did not find any defunct processes belonging to 936386
[2025-12-04 23:02:22] 2025-12-05 04:01:43,911 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-04 23:02:22] 2025-12-05 04:01:43,911 | INFO     | ready for new job
[2025-12-04 23:02:22] 2025-12-05 04:01:43,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-04 23:02:22] 2025-12-05 04:01:43,915 | INFO     | ***************************************
[2025-12-04 23:02:22] 2025-12-05 04:01:43,915 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-04 23:02:22] 2025-12-05 04:01:43,915 | INFO     | ***************************************
[2025-12-04 23:02:22] 2025-12-05 04:01:43,915 | INFO     | 
[2025-12-04 23:02:22] 2025-12-05 04:01:43,920 | INFO     | architecture information:
[2025-12-04 23:02:22] 2025-12-05 04:01:43,921 | INFO     | executing command: cat /etc/os-release
[2025-12-04 23:02:22] 2025-12-05 04:01:43,938 | INFO     | cat /etc/os-release:
[2025-12-04 23:02:22] NAME="CentOS Linux"
[2025-12-04 23:02:22] VERSION="7 (Core)"
[2025-12-04 23:02:22] ID="centos"
[2025-12-04 23:02:22] ID_LIKE="rhel fedora"
[2025-12-04 23:02:22] VERSION_ID="7"
[2025-12-04 23:02:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-04 23:02:22] ANSI_COLOR="0;31"
[2025-12-04 23:02:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-04 23:02:22] HOME_URL="https://www.centos.org/"
[2025-12-04 23:02:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-04 23:02:22] 
[2025-12-04 23:02:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-04 23:02:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-04 23:02:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-04 23:02:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-04 23:02:22] 
[2025-12-04 23:02:22] 2025-12-05 04:01:43,938 | INFO     | ***************************************
[2025-12-04 23:02:22] 2025-12-05 04:01:44,441 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-12-04 23:02:22] 2025-12-05 04:01:44,531 | INFO     | sufficient remaining disk space (124460728320 B)
[2025-12-04 23:02:22] 2025-12-05 04:01:44,532 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-04 23:02:22] 2025-12-05 04:01:44,532 | INFO     | current server update state: UPDATING_FINAL
[2025-12-04 23:02:22] 2025-12-05 04:01:44,532 | INFO     | update_server=False
[2025-12-04 23:02:22] 2025-12-05 04:01:44,532 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-04 23:02:22] 2025-12-05 04:01:44,533 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-04 23:02:22] 2025-12-05 04:01:44,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-04 23:02:22] 2025-12-05 04:01:44,533 | INFO     | aborting loop
[2025-12-04 23:02:22] 2025-12-05 04:01:45,529 | INFO     | all data control threads have been joined
[2025-12-04 23:02:22] 2025-12-05 04:01:45,538 | INFO     | [job] job monitor thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:45,540 | INFO     | [job] retrieve thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:45,560 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-04 23:02:22] 2025-12-05 04:01:45,627 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:45,652 | INFO     | [job] create_data_payload thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:45,941 | INFO     | all payload control threads have been joined
[2025-12-04 23:02:22] 2025-12-05 04:01:46,234 | INFO     | [payload] validate_post thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:46,245 | INFO     | [payload] failed_post thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:46,252 | INFO     | all job control threads have been joined
[2025-12-04 23:02:22] 2025-12-05 04:01:46,464 | INFO     | [job] validate thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:46,535 | INFO     | [data] control thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:46,539 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-04 23:02:22] 2025-12-05 04:01:46,715 | INFO     | [payload] validate_pre thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:46,903 | INFO     | [data] copytool_in thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:46,946 | INFO     | [payload] control thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:47,015 | INFO     | [payload] execute_payloads thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:47,268 | INFO     | [job] control thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:47,545 | INFO     | [job] queue monitor thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:47,567 | INFO     | [data] copytool_out thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:01:48,542 | INFO     | [data] queue_monitor thread has finished
[2025-12-04 23:02:22] 2025-12-05 04:02:14,769 | INFO     | PID=909639 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-04 23:02:22] 2025-12-05 04:02:14,770 | INFO     | .. there are 37 such processes running
[2025-12-04 23:02:22] 2025-12-05 04:02:14,770 | INFO     | found 0 job(s) in 20 queues
[2025-12-04 23:02:22] 2025-12-05 04:02:14,770 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-04 23:02:22] 2025-12-05 04:02:14,770 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-04 23:02:22] 2025-12-05 04:02:15,046 | INFO     | [monitor] cgroup control has ended
[2025-12-04 23:02:22] 2025-12-05 04:02:16,883 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140504038926144)>', '<ExcThread(monitor, started 140503253239552)>']
[2025-12-04 23:02:22] 2025-12-05 04:02:17,787 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-04 23:02:22] 2025-12-05 04:02:17,787 | INFO     | [monitor] control thread has ended
[2025-12-04 23:02:22] 2025-12-05 04:02:21,909 | INFO     | all workflow threads have been joined
[2025-12-04 23:02:22] 2025-12-05 04:02:21,909 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-04 23:02:22] 2025-12-05 04:02:21,910 | INFO     | traces error code: 0
[2025-12-04 23:02:22] 2025-12-05 04:02:21,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-04 23:02:22] 2025-12-05 04:02:22,145 [wrapper] ==== pilot stdout END ====
[2025-12-04 23:02:22] 2025-12-05 04:02:22,148 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-04 23:02:22] 2025-12-05 04:02:22,151 [wrapper] pilotpid: 909639
[2025-12-04 23:02:22] 2025-12-05 04:02:22,153 [wrapper] Pilot exit status: 0
[2025-12-04 23:02:22] 2025-12-05 04:02:22,178 [wrapper] pandaids: 6898362923
[2025-12-04 23:02:22] 2025-12-05 04:02:22,295 [wrapper] cleanup supervisor_pilot  561381 909640
[2025-12-04 23:02:22] 2025-12-05 04:02:22,310 [wrapper] Test setup, not cleaning
[2025-12-04 23:02:22] 2025-12-05 04:02:22,350 [wrapper] apfmon messages muted
[2025-12-04 23:02:22] 2025-12-05 04:02:22,404 [wrapper] ==== wrapper stdout END ====
[2025-12-04 23:02:22] 2025-12-05 04:02:22,411 [wrapper] ==== wrapper stderr END ====
[2025-12-04 23:02:22]  *** Error codes and diagnostics ***
[2025-12-04 23:02:22]     "exeErrorCode": 0,
[2025-12-04 23:02:22]     "exeErrorDiag": "",
[2025-12-04 23:02:22]     "pilotErrorCode": 0,
[2025-12-04 23:02:22]     "pilotErrorDiag": "",
[2025-12-04 23:02:22]  *** Listing of results directory ***
[2025-12-04 23:02:22] total 1328916
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:45 pilot3.tar.gz
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:51 queuedata.json
[2025-12-04 23:02:22] -rwx------. 1 boincer umatlas     36292 Nov 26 10:53 runpilot2-wrapper.sh
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas       100 Dec  4 08:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-04 23:02:22] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  4 08:28 run_atlas
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas       105 Dec  4 08:28 job.xml
[2025-12-04 23:02:22] -rw-r--r--. 2 boincer umatlas 409913138 Dec  4 08:28 EVNT.47483658._003198.pool.root.1
[2025-12-04 23:02:22] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-04 23:02:22] drwxrwx--x. 2 boincer umatlas      4096 Dec  4 08:28 shared
[2025-12-04 23:02:22] -rw-r--r--. 2 boincer umatlas    590108 Dec  4 08:28 input.tar.gz
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas         0 Dec  4 08:28 boinc_lockfile
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas      2786 Dec  4 08:28 pandaJob.out
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas        57 Dec  4 08:28 setup.sh.local
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas    985564 Dec  4 08:28 agis_schedconf.cvmfs.json
[2025-12-04 23:02:22] drwx------. 5 boincer umatlas      4096 Dec  4 08:28 pilot3
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas       533 Dec  4 22:52 boinc_task_state.xml
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas 929661129 Dec  4 23:00 HITS.47556173._001546.pool.root.1
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas      6948 Dec  4 23:00 init_data.xml
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas      1068 Dec  4 23:01 memory_monitor_summary.json
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas   1516240 Dec  4 23:01 agis_ddmendpoints.agis.ALL.json
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas   2026558 Dec  4 23:01 log.47556173._001546.job.log.tgz.1
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas        95 Dec  4 23:01 pilot_heartbeat.json
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas      8628 Dec  4 23:01 heartbeat.json
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas      8192 Dec  4 23:02 boinc_mmap_file
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas        29 Dec  4 23:02 wrapper_checkpoint.txt
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas      4824 Dec  4 23:02 pilotlog.txt
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas   6634657 Dec  4 23:02 log.47556173._001546.job.log.1
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas       353 Dec  4 23:02 output.list
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas       620 Dec  4 23:02 runtime_log
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas   8683520 Dec  4 23:02 result.tar.gz
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas      9338 Dec  4 23:02 runtime_log.err
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas       663 Dec  4 23:02 HTeLDm20Wi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmk6MKDmCrURWn.diag
[2025-12-04 23:02:22] -rw-r--r--. 1 boincer umatlas     21362 Dec  4 23:02 stderr.txt
[2025-12-04 23:02:22] HITS file was successfully produced:
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas 929661129 Dec  4 23:00 shared/HITS.pool.root.1
[2025-12-04 23:02:22]  *** Contents of shared directory: ***
[2025-12-04 23:02:22] total 1317264
[2025-12-04 23:02:22] -rw-r--r--. 2 boincer umatlas 409913138 Dec  4 08:28 ATLAS.root_0
[2025-12-04 23:02:22] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:28 start_atlas.sh
[2025-12-04 23:02:22] -rw-r--r--. 2 boincer umatlas    590108 Dec  4 08:28 input.tar.gz
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas 929661129 Dec  4 23:00 HITS.pool.root.1
[2025-12-04 23:02:22] -rw-------. 1 boincer umatlas   8683520 Dec  4 23:02 result.tar.gz
23:02:23 (895782): run_atlas exited; CPU time 195602.974014
23:02:23 (895782): called boinc_finish(0)

</stderr_txt>
]]>

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