Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:27:52 (885285): wrapper (7.7.26015): starting
08:27:52 (885285): wrapper: running run_atlas (--nthreads 8)
[2025-12-04 08:27:52] Arguments: --nthreads 8
[2025-12-04 08:27:52] Threads: 8
[2025-12-04 08:27:52] Checking for CVMFS
[2025-12-04 08:27:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 08:27:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 08:27:52] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 08:27:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 08:27:53] 2.13.3.0 12763 41583 247916 153638 3 382 30011432 40960001 31138 16776704 0 339208281 99.715 239307834 4358 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-04 08:27:53] CVMFS is ok
[2025-12-04 08:27:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 08:27:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 08:27:53] Further information can be found at the LHC@home message board.
[2025-12-04 08:27:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 08:27:53] Checking for apptainer binary...
[2025-12-04 08:27:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 08:27:53] Running /usr/bin/apptainer --version
[2025-12-04 08:27:53] apptainer version 1.4.4-1.el9
[2025-12-04 08:27:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 08:27:53] c7-2-17.aglt2.org
[2025-12-04 08:27:53] apptainer works
[2025-12-04 08:27:53] Set ATHENA_PROC_NUMBER=8
[2025-12-04 08:27:53] Set ATHENA_CORE_NUMBER=8
[2025-12-04 08:27:54] Starting ATLAS job with PandaID=6898272044
[2025-12-04 08:27:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 07:43:50]  *** The last 200 lines of the pilot log: ***
[2025-12-05 07:43:50] 2025-12-05 12:42:43,334 | INFO     | job 6898272044 has finished - writing final server update
[2025-12-05 07:43:50] 2025-12-05 12:42:43,334 | INFO     | total number of processed events: 1000 (read)
[2025-12-05 07:43:50] 2025-12-05 12:42:43,334 | INFO     | executing command: lscpu
[2025-12-05 07:43:50] 2025-12-05 12:42:43,530 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-12-05 07:43:50] 2025-12-05 12:42:43,923 | INFO     | monitor loop #5601: job 0:6898272044 is in state 'finished'
[2025-12-05 07:43:50] 2025-12-05 12:42:43,924 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 07:43:50] 2025-12-05 12:42:45,272 | INFO     | time since job start (83667s) is within the limit (172800.0s)
[2025-12-05 07:43:50] 2025-12-05 12:42:46,428 | INFO     | monitor loop #5602: job 0:6898272044 is in state 'finished'
[2025-12-05 07:43:50] 2025-12-05 12:42:46,429 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 07:43:50] 2025-12-05 12:42:47,279 | INFO     | time since job start (83669s) is within the limit (172800.0s)
[2025-12-05 07:43:50] 2025-12-05 12:42:48,936 | INFO     | monitor loop #5603: job 0:6898272044 is in state 'finished'
[2025-12-05 07:43:50] 2025-12-05 12:42:48,936 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 07:43:50] 2025-12-05 12:42:49,303 | INFO     | time since job start (83671s) is within the limit (172800.0s)
[2025-12-05 07:43:50] 2025-12-05 12:42:51,311 | INFO     | time since job start (83673s) is within the limit (172800.0s)
[2025-12-05 07:43:50] 2025-12-05 12:42:51,441 | INFO     | monitor loop #5604: job 0:6898272044 is in state 'finished'
[2025-12-05 07:43:50] 2025-12-05 12:42:51,441 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,208 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-05 07:43:50] 2025-12-05 12:42:52,221 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3252.134854166666
[2025-12-05 07:43:50] 2025-12-05 12:42:52,241 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6898272044/memory_monitor_summary.json (trf name=prmon)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,242 | INFO     | extracted standard info from prmon json
[2025-12-05 07:43:50] 2025-12-05 12:42:52,242 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 07:43:50] 2025-12-05 12:42:52,243 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 07:43:50] 2025-12-05 12:42:52,262 | INFO     | fitting pss+swap vs Time
[2025-12-05 07:43:50] 2025-12-05 12:42:52,264 | INFO     | sum of square deviations: 799070322645.4097
[2025-12-05 07:43:50] 2025-12-05 12:42:52,311 | INFO     | sum of deviations: 41816871018571.02
[2025-12-05 07:43:50] 2025-12-05 12:42:52,316 | INFO     | mean x: 1764896739.7950401
[2025-12-05 07:43:50] 2025-12-05 12:42:52,316 | INFO     | mean y: 3853883.8008752735
[2025-12-05 07:43:50] 2025-12-05 12:42:52,316 | INFO     | intersect: -92356551999.84474
[2025-12-05 07:43:50] 2025-12-05 12:42:52,318 | INFO     | chi2: 78.29844875642158
[2025-12-05 07:43:50] 2025-12-05 12:42:52,319 | INFO     | sum of square deviations: 790359821999.7344
[2025-12-05 07:43:50] 2025-12-05 12:42:52,445 | INFO     | sum of deviations: 42510099249180.36
[2025-12-05 07:43:50] 2025-12-05 12:42:52,445 | INFO     | mean x: 1764896587.2979503
[2025-12-05 07:43:50] 2025-12-05 12:42:52,445 | INFO     | mean y: 3866020.7803806737
[2025-12-05 07:43:50] 2025-12-05 12:42:52,446 | INFO     | intersect: -94922428310.26013
[2025-12-05 07:43:50] 2025-12-05 12:42:52,447 | INFO     | chi2: 77.48644369706874
[2025-12-05 07:43:50] 2025-12-05 12:42:52,447 | INFO     | current chi2=77.48644369706874 (change=1.0370640443706696 %)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,447 | INFO     | right removable region: 1365
[2025-12-05 07:43:50] 2025-12-05 12:42:52,465 | INFO     | sum of square deviations: 790359240487.3302
[2025-12-05 07:43:50] 2025-12-05 12:42:52,516 | INFO     | sum of deviations: 41200719935740.62
[2025-12-05 07:43:50] 2025-12-05 12:42:52,517 | INFO     | mean x: 1764896892.297218
[2025-12-05 07:43:50] 2025-12-05 12:42:52,517 | INFO     | mean y: 3864664.9787701317
[2025-12-05 07:43:50] 2025-12-05 12:42:52,517 | INFO     | intersect: -91998630972.52533
[2025-12-05 07:43:50] 2025-12-05 12:42:52,518 | INFO     | chi2: 75.1685597035512
[2025-12-05 07:43:50] 2025-12-05 12:42:52,518 | INFO     | current chi2=75.1685597035512 (change=3.997383220971779 %)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,518 | INFO     | left removable region: 10
[2025-12-05 07:43:50] 2025-12-05 12:42:52,519 | INFO     | sum of square deviations: 771419374239.9982
[2025-12-05 07:43:50] 2025-12-05 12:42:52,554 | INFO     | sum of deviations: 41640791412065.7
[2025-12-05 07:43:50] 2025-12-05 12:42:52,554 | INFO     | mean x: 1764896861.798524
[2025-12-05 07:43:50] 2025-12-05 12:42:52,554 | INFO     | mean y: 3882988.43099631
[2025-12-05 07:43:50] 2025-12-05 12:42:52,554 | INFO     | intersect: -95264274047.89656
[2025-12-05 07:43:50] 2025-12-05 12:42:52,556 | INFO     | chi2: 74.42034491223068
[2025-12-05 07:43:50] 2025-12-05 12:42:52,556 | INFO     | current memory leak: 53.98 B/s (using 1355 data points, chi2=74.42)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,557 | INFO     | could have reported an average CPU frequency of 3183 MHz (50 samples)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | ..............................
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . Timing measurements:
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . get job = 0 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . initial setup = 2 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . payload setup = 18 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . stage-in = 0 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . payload execution = 83608 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . stage-out = 5 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | . log creation = 1 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,558 | INFO     | ..............................
[2025-12-05 07:43:50] 2025-12-05 12:42:52,680 | INFO     | 
[2025-12-05 07:43:50] 2025-12-05 12:42:52,680 | INFO     | job summary report
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | --------------------------------------------------
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | PanDA job id: 6898272044
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | task id: 47556161
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | errors: (none)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | pilot state: finished 
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | transexitcode: 0
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | exeerrorcode: 0
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | exeerrordiag: 
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | exitcode: 0
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | exitmsg: OK
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | cpuconsumptiontime: 207873 s
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | nevents: 1000
[2025-12-05 07:43:50] 2025-12-05 12:42:52,681 | INFO     | neventsw: 0
[2025-12-05 07:43:50] 2025-12-05 12:42:52,682 | INFO     | pid: 918279
[2025-12-05 07:43:50] 2025-12-05 12:42:52,702 | INFO     | pgrp: 918279
[2025-12-05 07:43:50] 2025-12-05 12:42:52,706 | INFO     | corecount: 8
[2025-12-05 07:43:50] 2025-12-05 12:42:52,706 | INFO     | event service: False
[2025-12-05 07:43:50] 2025-12-05 12:42:52,706 | INFO     | sizes: {0: 2284315, 1: 2284343, 10: 2284605, 12: 2284633, 83630: 2349712, 83631: 2349711, 83638: 2358889, 83640: 2358945, 83650: 2359191}
[2025-12-05 07:43:50] 2025-12-05 12:42:52,706 | INFO     | --------------------------------------------------
[2025-12-05 07:43:50] 2025-12-05 12:42:52,707 | INFO     | 
[2025-12-05 07:43:50] 2025-12-05 12:42:52,707 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-12-05 07:43:50] 2025-12-05 12:42:52,733 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,734 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,735 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,735 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,735 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,735 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,735 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 07:43:50] 2025-12-05 12:42:52,735 | INFO     | job 6898272044 has completed (purged errors)
[2025-12-05 07:43:50] 2025-12-05 12:42:52,735 | INFO     | overall cleanup function is called
[2025-12-05 07:43:50] 2025-12-05 12:42:53,751 | INFO     | --- collectZombieJob: --- 10, [918279]
[2025-12-05 07:43:50] 2025-12-05 12:42:53,752 | INFO     | zombie collector waiting for pid 918279
[2025-12-05 07:43:50] 2025-12-05 12:42:53,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 07:43:50] 2025-12-05 12:42:53,752 | INFO     | collected zombie processes
[2025-12-05 07:43:50] 2025-12-05 12:42:53,752 | INFO     | will attempt to kill all subprocesses of pid=918279
[2025-12-05 07:43:50] 2025-12-05 12:42:54,440 | INFO     | process IDs to be killed: [918279] (in reverse order)
[2025-12-05 07:43:50] 2025-12-05 12:42:54,679 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 07:43:50] 2025-12-05 12:42:54,680 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 07:43:50] 2025-12-05 12:42:54,703 | INFO     | did not find any defunct processes belonging to 918279
[2025-12-05 07:43:50] 2025-12-05 12:42:54,727 | INFO     | did not find any defunct processes belonging to 918279
[2025-12-05 07:43:50] 2025-12-05 12:42:54,756 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 07:43:50] 2025-12-05 12:42:54,757 | INFO     | ready for new job
[2025-12-05 07:43:50] 2025-12-05 12:42:54,757 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 07:43:50] 2025-12-05 12:42:54,789 | INFO     | ***************************************
[2025-12-05 07:43:50] 2025-12-05 12:42:54,789 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 07:43:50] 2025-12-05 12:42:54,789 | INFO     | ***************************************
[2025-12-05 07:43:50] 2025-12-05 12:42:54,789 | INFO     | 
[2025-12-05 07:43:50] 2025-12-05 12:42:54,794 | INFO     | architecture information:
[2025-12-05 07:43:50] 2025-12-05 12:42:54,795 | INFO     | executing command: cat /etc/os-release
[2025-12-05 07:43:50] 2025-12-05 12:42:54,816 | INFO     | cat /etc/os-release:
[2025-12-05 07:43:50] NAME="CentOS Linux"
[2025-12-05 07:43:50] VERSION="7 (Core)"
[2025-12-05 07:43:50] ID="centos"
[2025-12-05 07:43:50] ID_LIKE="rhel fedora"
[2025-12-05 07:43:50] VERSION_ID="7"
[2025-12-05 07:43:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 07:43:50] ANSI_COLOR="0;31"
[2025-12-05 07:43:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 07:43:50] HOME_URL="https://www.centos.org/"
[2025-12-05 07:43:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 07:43:50] 
[2025-12-05 07:43:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 07:43:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 07:43:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 07:43:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 07:43:50] 
[2025-12-05 07:43:50] 2025-12-05 12:42:54,816 | INFO     | ***************************************
[2025-12-05 07:43:50] 2025-12-05 12:42:55,319 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-12-05 07:43:50] 2025-12-05 12:42:55,414 | INFO     | sufficient remaining disk space (126973116416 B)
[2025-12-05 07:43:50] 2025-12-05 12:42:55,414 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 07:43:50] 2025-12-05 12:42:55,414 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 07:43:50] 2025-12-05 12:42:55,414 | INFO     | update_server=False
[2025-12-05 07:43:50] 2025-12-05 12:42:55,414 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 07:43:50] 2025-12-05 12:42:55,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 07:43:50] 2025-12-05 12:42:55,415 | INFO     | aborting loop
[2025-12-05 07:43:50] 2025-12-05 12:42:55,559 | INFO     | all data control threads have been joined
[2025-12-05 07:43:50] 2025-12-05 12:42:56,162 | INFO     | all payload control threads have been joined
[2025-12-05 07:43:50] 2025-12-05 12:42:56,420 | INFO     | [job] retrieve thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:56,421 | INFO     | [job] job monitor thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:56,456 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:56,565 | INFO     | [data] control thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:56,611 | INFO     | all job control threads have been joined
[2025-12-05 07:43:50] 2025-12-05 12:42:56,645 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:56,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 07:43:50] 2025-12-05 12:42:56,714 | INFO     | [data] copytool_in thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,076 | INFO     | [job] validate thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,129 | INFO     | [payload] failed_post thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,168 | INFO     | [payload] control thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,174 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,457 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,547 | INFO     | [payload] validate_post thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,617 | INFO     | [job] control thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:57,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 07:43:50] 2025-12-05 12:42:58,351 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 07:43:50] 2025-12-05 12:42:58,657 | INFO     | [job] queue monitor thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:42:58,691 | INFO     | [data] copytool_out thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:43:02,360 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 07:43:50] 2025-12-05 12:43:22,289 [wrapper] supervise_pilot (15 min periods counter: 94)
[2025-12-05 07:43:50] 2025-12-05 12:43:25,518 | INFO     | PID=895237 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-05 07:43:50] 2025-12-05 12:43:25,518 | INFO     | .. there are 34 such processes running
[2025-12-05 07:43:50] 2025-12-05 12:43:25,518 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 07:43:50] 2025-12-05 12:43:25,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 07:43:50] 2025-12-05 12:43:25,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 07:43:50] 2025-12-05 12:43:42,505 | INFO     | [monitor] cgroup control has ended
[2025-12-05 07:43:50] 2025-12-05 12:43:44,028 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140274295170880)>', '<ExcThread(monitor, started 140273816426240)>']
[2025-12-05 07:43:50] 2025-12-05 12:43:44,671 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 07:43:50] 2025-12-05 12:43:44,671 | INFO     | [monitor] control thread has ended
[2025-12-05 07:43:50] 2025-12-05 12:43:49,056 | INFO     | all workflow threads have been joined
[2025-12-05 07:43:50] 2025-12-05 12:43:49,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 07:43:50] 2025-12-05 12:43:49,057 | INFO     | traces error code: 0
[2025-12-05 07:43:50] 2025-12-05 12:43:49,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 07:43:50] 2025-12-05 12:43:49,303 [wrapper] ==== pilot stdout END ====
[2025-12-05 07:43:50] 2025-12-05 12:43:49,352 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 07:43:50] 2025-12-05 12:43:49,369 [wrapper] pilotpid: 895237
[2025-12-05 07:43:50] 2025-12-05 12:43:49,387 [wrapper] Pilot exit status: 0
[2025-12-05 07:43:50] 2025-12-05 12:43:49,477 [wrapper] pandaids: 6898272044
[2025-12-05 07:43:50] 2025-12-05 12:43:49,711 [wrapper] cleanup supervisor_pilot 2846086 895238
[2025-12-05 07:43:50] 2025-12-05 12:43:49,719 [wrapper] Test setup, not cleaning
[2025-12-05 07:43:50] 2025-12-05 12:43:49,722 [wrapper] apfmon messages muted
[2025-12-05 07:43:50] 2025-12-05 12:43:49,738 [wrapper] ==== wrapper stdout END ====
[2025-12-05 07:43:50] 2025-12-05 12:43:49,745 [wrapper] ==== wrapper stderr END ====
[2025-12-05 07:43:50]  *** Error codes and diagnostics ***
[2025-12-05 07:43:50]     "exeErrorCode": 0,
[2025-12-05 07:43:50]     "exeErrorDiag": "",
[2025-12-05 07:43:50]     "pilotErrorCode": 0,
[2025-12-05 07:43:50]     "pilotErrorDiag": "",
[2025-12-05 07:43:50]  *** Listing of results directory ***
[2025-12-05 07:43:50] total 1325296
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:41 queuedata.json
[2025-12-05 07:43:50] -rwx------. 1 boincer umatlas     36292 Nov 26 10:42 runpilot2-wrapper.sh
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas       100 Dec  4 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 07:43:50] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  4 08:27 run_atlas
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas       105 Dec  4 08:27 job.xml
[2025-12-05 07:43:50] -rw-r--r--. 2 boincer umatlas 410940267 Dec  4 08:27 EVNT.47483658._002551.pool.root.1
[2025-12-05 07:43:50] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:27 start_atlas.sh
[2025-12-05 07:43:50] drwxrwx--x. 2 boincer umatlas      4096 Dec  4 08:27 shared
[2025-12-05 07:43:50] -rw-r--r--. 2 boincer umatlas    590110 Dec  4 08:27 input.tar.gz
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas         0 Dec  4 08:27 boinc_lockfile
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas      2786 Dec  4 08:27 pandaJob.out
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas        57 Dec  4 08:27 setup.sh.local
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas    985564 Dec  4 08:28 agis_schedconf.cvmfs.json
[2025-12-05 07:43:50] drwx------. 5 boincer umatlas      4096 Dec  4 08:28 pilot3
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas       532 Dec  5 07:35 boinc_task_state.xml
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas      6948 Dec  5 07:40 init_data.xml
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas 914881892 Dec  5 07:41 HITS.47556161._005339.pool.root.1
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas      1074 Dec  5 07:42 memory_monitor_summary.json
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas        95 Dec  5 07:42 pilot_heartbeat.json
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas   1516240 Dec  5 07:42 agis_ddmendpoints.agis.ALL.json
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas   2446461 Dec  5 07:42 log.47556161._005339.job.log.tgz.1
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas      8639 Dec  5 07:42 heartbeat.json
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas      8192 Dec  5 07:43 boinc_mmap_file
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas        29 Dec  5 07:43 wrapper_checkpoint.txt
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas      4824 Dec  5 07:43 pilotlog.txt
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas  11236290 Dec  5 07:43 log.47556161._005339.job.log.1
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas       353 Dec  5 07:43 output.list
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas       620 Dec  5 07:43 runtime_log
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas  13701120 Dec  5 07:43 result.tar.gz
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas       665 Dec  5 07:43 xa9LDmDqWi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmzzJKDmatIEMo.diag
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas      9338 Dec  5 07:43 runtime_log.err
[2025-12-05 07:43:50] -rw-r--r--. 1 boincer umatlas     21778 Dec  5 07:43 stderr.txt
[2025-12-05 07:43:50] HITS file was successfully produced:
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas 914881892 Dec  5 07:41 shared/HITS.pool.root.1
[2025-12-05 07:43:50]  *** Contents of shared directory: ***
[2025-12-05 07:43:50] total 1308736
[2025-12-05 07:43:50] -rw-r--r--. 2 boincer umatlas 410940267 Dec  4 08:27 ATLAS.root_0
[2025-12-05 07:43:50] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:27 start_atlas.sh
[2025-12-05 07:43:50] -rw-r--r--. 2 boincer umatlas    590110 Dec  4 08:27 input.tar.gz
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas 914881892 Dec  5 07:41 HITS.pool.root.1
[2025-12-05 07:43:50] -rw-------. 1 boincer umatlas  13701120 Dec  5 07:43 result.tar.gz
07:43:51 (885285): run_atlas exited; CPU time 209276.521976
07:43:51 (885285): called boinc_finish(0)

</stderr_txt>
]]>

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