Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:27:45 (884468): wrapper (7.7.26015): starting
08:27:45 (884468): wrapper: running run_atlas (--nthreads 8)
[2025-12-04 08:27:45] Arguments: --nthreads 8
[2025-12-04 08:27:45] Threads: 8
[2025-12-04 08:27:45] Checking for CVMFS
[2025-12-04 08:27:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-04 08:27:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-04 08:27:45] Running cvmfs_config stat atlas.cern.ch
[2025-12-04 08:27:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-04 08:27:46] 2.13.3.0 12763 41583 247916 153638 3 382 30011206 40960001 31100 16776704 0 339206226 99.715 239307703 4358 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-12-04 08:27:46] CVMFS is ok
[2025-12-04 08:27:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-04 08:27:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-04 08:27:46] Further information can be found at the LHC@home message board.
[2025-12-04 08:27:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-04 08:27:46] Checking for apptainer binary...
[2025-12-04 08:27:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-04 08:27:46] Running /usr/bin/apptainer --version
[2025-12-04 08:27:46] apptainer version 1.4.4-1.el9
[2025-12-04 08:27:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-04 08:27:46] c7-2-17.aglt2.org
[2025-12-04 08:27:46] apptainer works
[2025-12-04 08:27:46] Set ATHENA_PROC_NUMBER=8
[2025-12-04 08:27:46] Set ATHENA_CORE_NUMBER=8
[2025-12-04 08:27:46] Starting ATLAS job with PandaID=6898272041
[2025-12-04 08:27:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 04:53:28]  *** The last 200 lines of the pilot log: ***
[2025-12-05 04:53:28] 2025-12-05 09:52:51,095 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 04:53:28] 2025-12-05 09:52:51,095 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 04:53:28] 2025-12-05 09:52:51,110 | INFO     | fitting pss+swap vs Time
[2025-12-05 04:53:28] 2025-12-05 09:52:51,111 | INFO     | sum of square deviations: 541193527368.38794
[2025-12-05 04:53:28] 2025-12-05 09:52:51,140 | INFO     | sum of deviations: 3180123428655.2803
[2025-12-05 04:53:28] 2025-12-05 09:52:51,140 | INFO     | mean x: 1764891652.6370432
[2025-12-05 04:53:28] 2025-12-05 09:52:51,140 | INFO     | mean y: 2957155.764950166
[2025-12-05 04:53:28] 2025-12-05 09:52:51,141 | INFO     | intersect: -10367775326.718613
[2025-12-05 04:53:28] 2025-12-05 09:52:51,142 | INFO     | chi2: 8.402475890334705
[2025-12-05 04:53:28] 2025-12-05 09:52:51,143 | INFO     | sum of square deviations: 534479381801.89636
[2025-12-05 04:53:28] 2025-12-05 09:52:51,169 | INFO     | sum of deviations: 3603880479487.26
[2025-12-05 04:53:28] 2025-12-05 09:52:51,169 | INFO     | mean x: 1764891500.141785
[2025-12-05 04:53:28] 2025-12-05 09:52:51,169 | INFO     | mean y: 2966779.5337781482
[2025-12-05 04:53:28] 2025-12-05 09:52:51,169 | INFO     | intersect: -11897320195.673538
[2025-12-05 04:53:28] 2025-12-05 09:52:51,170 | INFO     | chi2: 5.107114963442077
[2025-12-05 04:53:28] 2025-12-05 09:52:51,170 | INFO     | current chi2=5.107114963442077 (change=39.2189274911607 %)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,171 | INFO     | sum of square deviations: 527821004722.8504
[2025-12-05 04:53:28] 2025-12-05 09:52:51,196 | INFO     | sum of deviations: 3860062890859.1973
[2025-12-05 04:53:28] 2025-12-05 09:52:51,197 | INFO     | mean x: 1764891347.6465662
[2025-12-05 04:53:28] 2025-12-05 09:52:51,197 | INFO     | mean y: 2972641.244556114
[2025-12-05 04:53:28] 2025-12-05 09:52:51,197 | INFO     | intersect: -12904038516.877432
[2025-12-05 04:53:28] 2025-12-05 09:52:51,198 | INFO     | chi2: 3.5312466936454747
[2025-12-05 04:53:28] 2025-12-05 09:52:51,198 | INFO     | current chi2=3.5312466936454747 (change=30.856330454219965 %)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,199 | INFO     | sum of square deviations: 521218163568.7495
[2025-12-05 04:53:28] 2025-12-05 09:52:51,225 | INFO     | sum of deviations: 3990007555019.2124
[2025-12-05 04:53:28] 2025-12-05 09:52:51,225 | INFO     | mean x: 1764891195.1513877
[2025-12-05 04:53:28] 2025-12-05 09:52:51,225 | INFO     | mean y: 2975641.7821698906
[2025-12-05 04:53:28] 2025-12-05 09:52:51,225 | INFO     | intersect: -13507545853.14283
[2025-12-05 04:53:28] 2025-12-05 09:52:51,226 | INFO     | chi2: 3.07153649561462
[2025-12-05 04:53:28] 2025-12-05 09:52:51,226 | INFO     | current chi2=3.07153649561462 (change=13.018354080390623 %)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,226 | INFO     | right removable region: 1188
[2025-12-05 04:53:28] 2025-12-05 09:52:51,227 | INFO     | sum of square deviations: 534478546711.8966
[2025-12-05 04:53:28] 2025-12-05 09:52:51,252 | INFO     | sum of deviations: 2810441388855.074
[2025-12-05 04:53:28] 2025-12-05 09:52:51,253 | INFO     | mean x: 1764891805.141785
[2025-12-05 04:53:28] 2025-12-05 09:52:51,253 | INFO     | mean y: 2965544.387823186
[2025-12-05 04:53:28] 2025-12-05 09:52:51,253 | INFO     | intersect: -9277341413.742163
[2025-12-05 04:53:28] 2025-12-05 09:52:51,254 | INFO     | chi2: 5.876914941845252
[2025-12-05 04:53:28] 2025-12-05 09:52:51,254 | INFO     | current chi2=5.876914941845252 (change=30.057342400643883 %)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,255 | INFO     | sum of square deviations: 527819554085.7227
[2025-12-05 04:53:28] 2025-12-05 09:52:51,280 | INFO     | sum of deviations: 2711751323013.066
[2025-12-05 04:53:28] 2025-12-05 09:52:51,280 | INFO     | mean x: 1764891957.6440537
[2025-12-05 04:53:28] 2025-12-05 09:52:51,280 | INFO     | mean y: 2967803.903685092
[2025-12-05 04:53:28] 2025-12-05 09:52:51,280 | INFO     | intersect: -9064426657.081177
[2025-12-05 04:53:28] 2025-12-05 09:52:51,281 | INFO     | chi2: 5.8058228530092135
[2025-12-05 04:53:28] 2025-12-05 09:52:51,281 | INFO     | current chi2=5.8058228530092135 (change=1.209683814374154 %)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,281 | INFO     | left removable region: 20
[2025-12-05 04:53:28] 2025-12-05 09:52:51,282 | INFO     | sum of square deviations: 494085030371.7399
[2025-12-05 04:53:28] 2025-12-05 09:52:51,306 | INFO     | sum of deviations: 3414444619736.38
[2025-12-05 04:53:28] 2025-12-05 09:52:51,307 | INFO     | mean x: 1764891774.660959
[2025-12-05 04:53:28] 2025-12-05 09:52:51,307 | INFO     | mean y: 2990063.607020548
[2025-12-05 04:53:28] 2025-12-05 09:52:51,307 | INFO     | intersect: -12193544650.011328
[2025-12-05 04:53:28] 2025-12-05 09:52:51,308 | INFO     | chi2: 0.36504053993544
[2025-12-05 04:53:28] 2025-12-05 09:52:51,308 | INFO     | current memory leak: 6.91 B/s (using 1168 data points, chi2=0.37)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,309 | INFO     | could have reported an average CPU frequency of 3182 MHz (44 samples)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,309 | INFO     | ..............................
[2025-12-05 04:53:28] 2025-12-05 09:52:51,309 | INFO     | . Timing measurements:
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | . get job = 0 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | . initial setup = 3 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | . payload setup = 13 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | . stage-in = 0 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | . payload execution = 73404 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | . stage-out = 4 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | . log creation = 1 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,310 | INFO     | ..............................
[2025-12-05 04:53:28] 2025-12-05 09:52:51,660 | INFO     | 
[2025-12-05 04:53:28] 2025-12-05 09:52:51,672 | INFO     | job summary report
[2025-12-05 04:53:28] 2025-12-05 09:52:51,672 | INFO     | --------------------------------------------------
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | PanDA job id: 6898272041
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | task id: 47556161
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | errors: (none)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | pilot state: finished 
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | transexitcode: 0
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | exeerrorcode: 0
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | exeerrordiag: 
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | exitcode: 0
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | exitmsg: OK
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | cpuconsumptiontime: 206700 s
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | nevents: 1000
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | neventsw: 0
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | pid: 921207
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | pgrp: 921207
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | corecount: 8
[2025-12-05 04:53:28] 2025-12-05 09:52:51,673 | INFO     | event service: False
[2025-12-05 04:53:28] 2025-12-05 09:52:51,674 | INFO     | sizes: {0: 2284144, 1: 2284343, 11: 2284343, 12: 2284633, 22: 2284661, 73422: 2344919, 73427: 2353913, 73428: 2353969, 73439: 2354215}
[2025-12-05 04:53:28] 2025-12-05 09:52:51,674 | INFO     | --------------------------------------------------
[2025-12-05 04:53:28] 2025-12-05 09:52:51,674 | INFO     | 
[2025-12-05 04:53:28] 2025-12-05 09:52:51,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-12-05 04:53:28] 2025-12-05 09:52:51,724 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,724 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,724 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,724 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,725 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 04:53:28] 2025-12-05 09:52:51,726 | INFO     | job 6898272041 has completed (purged errors)
[2025-12-05 04:53:28] 2025-12-05 09:52:51,726 | INFO     | overall cleanup function is called
[2025-12-05 04:53:28] 2025-12-05 09:52:52,754 | INFO     | --- collectZombieJob: --- 10, [921207]
[2025-12-05 04:53:28] 2025-12-05 09:52:52,754 | INFO     | zombie collector waiting for pid 921207
[2025-12-05 04:53:28] 2025-12-05 09:52:52,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 04:53:28] 2025-12-05 09:52:52,755 | INFO     | collected zombie processes
[2025-12-05 04:53:28] 2025-12-05 09:52:52,755 | INFO     | will attempt to kill all subprocesses of pid=921207
[2025-12-05 04:53:28] 2025-12-05 09:52:53,542 | INFO     | process IDs to be killed: [921207] (in reverse order)
[2025-12-05 04:53:28] 2025-12-05 09:52:53,699 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 04:53:28] 2025-12-05 09:52:53,699 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 04:53:28] 2025-12-05 09:52:53,744 | INFO     | did not find any defunct processes belonging to 921207
[2025-12-05 04:53:28] 2025-12-05 09:52:53,765 | INFO     | did not find any defunct processes belonging to 921207
[2025-12-05 04:53:28] 2025-12-05 09:52:53,767 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 04:53:28] 2025-12-05 09:52:53,767 | INFO     | ready for new job
[2025-12-05 04:53:28] 2025-12-05 09:52:53,767 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 04:53:28] 2025-12-05 09:52:53,771 | INFO     | ***************************************
[2025-12-05 04:53:28] 2025-12-05 09:52:53,771 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 04:53:28] 2025-12-05 09:52:53,771 | INFO     | ***************************************
[2025-12-05 04:53:28] 2025-12-05 09:52:53,771 | INFO     | 
[2025-12-05 04:53:28] 2025-12-05 09:52:53,776 | INFO     | architecture information:
[2025-12-05 04:53:28] 2025-12-05 09:52:53,777 | INFO     | executing command: cat /etc/os-release
[2025-12-05 04:53:28] 2025-12-05 09:52:53,802 | INFO     | cat /etc/os-release:
[2025-12-05 04:53:28] NAME="CentOS Linux"
[2025-12-05 04:53:28] VERSION="7 (Core)"
[2025-12-05 04:53:28] ID="centos"
[2025-12-05 04:53:28] ID_LIKE="rhel fedora"
[2025-12-05 04:53:28] VERSION_ID="7"
[2025-12-05 04:53:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 04:53:28] ANSI_COLOR="0;31"
[2025-12-05 04:53:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 04:53:28] HOME_URL="https://www.centos.org/"
[2025-12-05 04:53:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 04:53:28] 
[2025-12-05 04:53:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 04:53:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 04:53:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 04:53:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 04:53:28] 
[2025-12-05 04:53:28] 2025-12-05 09:52:53,802 | INFO     | ***************************************
[2025-12-05 04:53:28] 2025-12-05 09:52:54,306 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-12-05 04:53:28] 2025-12-05 09:52:54,324 | INFO     | sufficient remaining disk space (125542858752 B)
[2025-12-05 04:53:28] 2025-12-05 09:52:54,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 04:53:28] 2025-12-05 09:52:54,325 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 04:53:28] 2025-12-05 09:52:54,325 | INFO     | update_server=False
[2025-12-05 04:53:28] 2025-12-05 09:52:54,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 04:53:28] 2025-12-05 09:52:54,325 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 04:53:28] 2025-12-05 09:52:54,325 | INFO     | aborting loop
[2025-12-05 04:53:28] 2025-12-05 09:52:54,691 | INFO     | all data control threads have been joined
[2025-12-05 04:53:28] 2025-12-05 09:52:54,949 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 04:53:28] 2025-12-05 09:52:54,963 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 04:53:28] 2025-12-05 09:52:55,331 | INFO     | [job] retrieve thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:55,335 | INFO     | [job] job monitor thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:55,339 | INFO     | [job] validate thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:55,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:55,449 | INFO     | all payload control threads have been joined
[2025-12-05 04:53:28] 2025-12-05 09:52:55,598 | INFO     | all job control threads have been joined
[2025-12-05 04:53:28] 2025-12-05 09:52:55,697 | INFO     | [data] control thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:55,835 | INFO     | [payload] validate_post thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:55,836 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:56,143 | INFO     | [payload] failed_post thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:56,224 | INFO     | [data] copytool_in thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:56,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 04:53:28] 2025-12-05 09:52:56,455 | INFO     | [payload] control thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:56,549 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:56,612 | INFO     | [job] control thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:56,676 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:56,970 | INFO     | [data] copytool_out thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:57,432 | INFO     | [job] queue monitor thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:52:58,958 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 04:53:28] 2025-12-05 09:53:21,118 | INFO     | [monitor] cgroup control has ended
[2025-12-05 04:53:28] 2025-12-05 09:53:22,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140303713638208)>', '<ExcThread(monitor, started 140303059105536)>']
[2025-12-05 04:53:28] 2025-12-05 09:53:23,586 | INFO     | PID=892781 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-12-05 04:53:28] 2025-12-05 09:53:23,586 | INFO     | .. there are 35 such processes running
[2025-12-05 04:53:28] 2025-12-05 09:53:23,587 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 04:53:28] 2025-12-05 09:53:23,587 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 04:53:28] 2025-12-05 09:53:23,587 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 04:53:28] 2025-12-05 09:53:23,588 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 04:53:28] 2025-12-05 09:53:23,588 | INFO     | [monitor] control thread has ended
[2025-12-05 04:53:28] 2025-12-05 09:53:27,852 | INFO     | all workflow threads have been joined
[2025-12-05 04:53:28] 2025-12-05 09:53:27,853 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 04:53:28] 2025-12-05 09:53:27,854 | INFO     | traces error code: 0
[2025-12-05 04:53:28] 2025-12-05 09:53:27,854 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 04:53:28] 2025-12-05 09:53:28,159 [wrapper] ==== pilot stdout END ====
[2025-12-05 04:53:28] 2025-12-05 09:53:28,176 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 04:53:28] 2025-12-05 09:53:28,190 [wrapper] pilotpid: 892781
[2025-12-05 04:53:28] 2025-12-05 09:53:28,205 [wrapper] Pilot exit status: 0
[2025-12-05 04:53:28] 2025-12-05 09:53:28,289 [wrapper] pandaids: 6898272041
[2025-12-05 04:53:28] 2025-12-05 09:53:28,402 [wrapper] cleanup supervisor_pilot 2065834 892782
[2025-12-05 04:53:28] 2025-12-05 09:53:28,411 [wrapper] Test setup, not cleaning
[2025-12-05 04:53:28] 2025-12-05 09:53:28,415 [wrapper] apfmon messages muted
[2025-12-05 04:53:28] 2025-12-05 09:53:28,422 [wrapper] ==== wrapper stdout END ====
[2025-12-05 04:53:28] 2025-12-05 09:53:28,428 [wrapper] ==== wrapper stderr END ====
[2025-12-05 04:53:28]  *** Error codes and diagnostics ***
[2025-12-05 04:53:28]     "exeErrorCode": 0,
[2025-12-05 04:53:28]     "exeErrorDiag": "",
[2025-12-05 04:53:28]     "pilotErrorCode": 0,
[2025-12-05 04:53:28]     "pilotErrorDiag": "",
[2025-12-05 04:53:28]  *** Listing of results directory ***
[2025-12-05 04:53:28] total 1332064
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 26 10:05 pilot3.tar.gz
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 26 10:41 queuedata.json
[2025-12-05 04:53:28] -rwx------. 1 boincer umatlas     36292 Nov 26 10:42 runpilot2-wrapper.sh
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas       100 Dec  4 08:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 04:53:28] -rwxr-xr-x. 1 boincer umatlas      7986 Dec  4 08:27 run_atlas
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas       105 Dec  4 08:27 job.xml
[2025-12-05 04:53:28] -rw-r--r--. 2 boincer umatlas 410940267 Dec  4 08:27 EVNT.47483658._002551.pool.root.1
[2025-12-05 04:53:28] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:27 start_atlas.sh
[2025-12-05 04:53:28] drwxrwx--x. 2 boincer umatlas      4096 Dec  4 08:27 shared
[2025-12-05 04:53:28] -rw-r--r--. 2 boincer umatlas    590109 Dec  4 08:27 input.tar.gz
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas         0 Dec  4 08:27 boinc_lockfile
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas      2786 Dec  4 08:27 pandaJob.out
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas        57 Dec  4 08:27 setup.sh.local
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas    985564 Dec  4 08:28 agis_schedconf.cvmfs.json
[2025-12-05 04:53:28] drwx------. 5 boincer umatlas      4096 Dec  4 08:28 pilot3
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas       533 Dec  5 04:29 boinc_task_state.xml
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas      6948 Dec  5 04:48 init_data.xml
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas 924853281 Dec  5 04:51 HITS.47556161._005336.pool.root.1
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas      1071 Dec  5 04:52 memory_monitor_summary.json
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas   1516240 Dec  5 04:52 agis_ddmendpoints.agis.ALL.json
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas   2316423 Dec  5 04:52 log.47556161._005336.job.log.tgz.1
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas      8628 Dec  5 04:52 heartbeat.json
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas        95 Dec  5 04:53 pilot_heartbeat.json
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas      4824 Dec  5 04:53 pilotlog.txt
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas      8192 Dec  5 04:53 boinc_mmap_file
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas   9844390 Dec  5 04:53 log.47556161._005336.job.log.1
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas       353 Dec  5 04:53 output.list
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas       620 Dec  5 04:53 runtime_log
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas  12185600 Dec  5 04:53 result.tar.gz
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas       664 Dec  5 04:53 uO3LDmDqWi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwzJKDmu8VISo.diag
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas      9338 Dec  5 04:53 runtime_log.err
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas        29 Dec  5 04:53 wrapper_checkpoint.txt
[2025-12-05 04:53:28] -rw-r--r--. 1 boincer umatlas     21127 Dec  5 04:53 stderr.txt
[2025-12-05 04:53:28] HITS file was successfully produced:
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas 924853281 Dec  5 04:51 shared/HITS.pool.root.1
[2025-12-05 04:53:28]  *** Contents of shared directory: ***
[2025-12-05 04:53:28] total 1316992
[2025-12-05 04:53:28] -rw-r--r--. 2 boincer umatlas 410940267 Dec  4 08:27 ATLAS.root_0
[2025-12-05 04:53:28] -rw-r--r--. 2 boincer umatlas     15847 Dec  4 08:27 start_atlas.sh
[2025-12-05 04:53:28] -rw-r--r--. 2 boincer umatlas    590109 Dec  4 08:27 input.tar.gz
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas 924853281 Dec  5 04:51 HITS.pool.root.1
[2025-12-05 04:53:28] -rw-------. 1 boincer umatlas  12185600 Dec  5 04:53 result.tar.gz
04:53:30 (884468): run_atlas exited; CPU time 208190.297104
04:53:30 (884468): called boinc_finish(0)

</stderr_txt>
]]>

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