Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
09:42:23 (3369657): wrapper (7.7.26015): starting
09:42:23 (3369657): wrapper: running run_atlas (--nthreads 4)
[2025-12-05 09:42:23] Arguments: --nthreads 4
[2025-12-05 09:42:23] Threads: 4
[2025-12-05 09:42:23] Checking for CVMFS
[2025-12-05 09:42:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 09:42:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 09:42:23] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 09:42:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 09:42:23] 2.13.2.0 698859 21771 67500 153653 0 117 3413523 4096000 3333 130560 0 34427638 99.929 2398467 1053 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2025-12-05 09:42:23] CVMFS is ok
[2025-12-05 09:42:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 09:42:23] Small home clusters do not require a local http proxy but it is suggested if
[2025-12-05 09:42:23] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-12-05 09:42:23] Further information can be found at the LHC@home message board.
[2025-12-05 09:42:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 09:42:23] Checking for apptainer binary...
[2025-12-05 09:42:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 09:42:23] Running /usr/bin/apptainer --version
[2025-12-05 09:42:23] apptainer version 1.4.3
[2025-12-05 09:42:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 09:42:24] Taichi-Ubuntu
[2025-12-05 09:42:24] apptainer works
[2025-12-05 09:42:24] Set ATHENA_PROC_NUMBER=4
[2025-12-05 09:42:24] Set ATHENA_CORE_NUMBER=4
[2025-12-05 09:42:24] Starting ATLAS job with PandaID=6897488210
[2025-12-05 09:42:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 21:04:42]  *** The last 200 lines of the pilot log: ***
[2025-12-05 21:04:42] 2025-12-06 02:03:34,044 | INFO     | CPU arch script returned: x86-64-v3
[2025-12-05 21:04:42] 2025-12-06 02:03:34,051 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 2986.792541666668
[2025-12-05 21:04:42] 2025-12-06 02:03:34,057 | INFO     | using path: /home/whitlerd/Desktop/BOINC/slots/8/PanDA_Pilot-6897488210/memory_monitor_summary.json (trf name=prmon)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,058 | INFO     | extracted standard info from prmon json
[2025-12-05 21:04:42] 2025-12-06 02:03:34,058 | INFO     | extracted standard memory fields from prmon json
[2025-12-05 21:04:42] 2025-12-06 02:03:34,058 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-12-05 21:04:42] 2025-12-06 02:03:34,066 | INFO     | fitting pss+swap vs Time
[2025-12-05 21:04:42] 2025-12-06 02:03:34,066 | INFO     | sum of square deviations: 93261385827.5
[2025-12-05 21:04:42] 2025-12-06 02:03:34,071 | INFO     | sum of deviations: 269155817175.5
[2025-12-05 21:04:42] 2025-12-06 02:03:34,072 | INFO     | mean x: 1764966185.5
[2025-12-05 21:04:42] 2025-12-06 02:03:34,072 | INFO     | mean y: 2260073.741791045
[2025-12-05 21:04:42] 2025-12-06 02:03:34,072 | INFO     | intersect: -5091497773.94933
[2025-12-05 21:04:42] 2025-12-06 02:03:34,072 | INFO     | chi2: 4.5097832040400165
[2025-12-05 21:04:42] 2025-12-06 02:03:34,073 | INFO     | sum of square deviations: 91188984180.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,078 | INFO     | sum of deviations: 418270761225.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,078 | INFO     | mean x: 1764966033.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,078 | INFO     | mean y: 2271032.9488721807
[2025-12-05 21:04:42] 2025-12-06 02:03:34,078 | INFO     | intersect: -8093374431.222132
[2025-12-05 21:04:42] 2025-12-06 02:03:34,078 | INFO     | chi2: 1.8482902121914937
[2025-12-05 21:04:42] 2025-12-06 02:03:34,078 | INFO     | current chi2=1.8482902121914937 (change=59.01598527983046 %)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,079 | INFO     | sum of square deviations: 89147513345.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,084 | INFO     | sum of deviations: 412432575024.5
[2025-12-05 21:04:42] 2025-12-06 02:03:34,084 | INFO     | mean x: 1764965880.5
[2025-12-05 21:04:42] 2025-12-06 02:03:34,084 | INFO     | mean y: 2270596.865151515
[2025-12-05 21:04:42] 2025-12-06 02:03:34,084 | INFO     | intersect: -8163177833.624651
[2025-12-05 21:04:42] 2025-12-06 02:03:34,084 | INFO     | chi2: 1.8478805883952465
[2025-12-05 21:04:42] 2025-12-06 02:03:34,085 | INFO     | current chi2=1.8478805883952465 (change=0.02216230944390055 %)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,085 | INFO     | right removable region: 659
[2025-12-05 21:04:42] 2025-12-06 02:03:34,085 | INFO     | sum of square deviations: 91188984180.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,090 | INFO     | sum of deviations: 151743208624.00018
[2025-12-05 21:04:42] 2025-12-06 02:03:34,090 | INFO     | mean x: 1764966338.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,090 | INFO     | mean y: 2268691.4857142856
[2025-12-05 21:04:42] 2025-12-06 02:03:34,090 | INFO     | intersect: -2934727017.4785657
[2025-12-05 21:04:42] 2025-12-06 02:03:34,091 | INFO     | chi2: 2.7688813831231944
[2025-12-05 21:04:42] 2025-12-06 02:03:34,091 | INFO     | current chi2=2.7688813831231944 (change=38.602782931056716 %)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,091 | INFO     | sum of square deviations: 89147513345.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,096 | INFO     | sum of deviations: 146870527495.49994
[2025-12-05 21:04:42] 2025-12-06 02:03:34,096 | INFO     | mean x: 1764966490.5
[2025-12-05 21:04:42] 2025-12-06 02:03:34,096 | INFO     | mean y: 2269054.5318181817
[2025-12-05 21:04:42] 2025-12-06 02:03:34,096 | INFO     | intersect: -2905513223.9085393
[2025-12-05 21:04:42] 2025-12-06 02:03:34,097 | INFO     | chi2: 2.7682549479180873
[2025-12-05 21:04:42] 2025-12-06 02:03:34,097 | INFO     | current chi2=2.7682549479180873 (change=0.02262412571825245 %)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,097 | INFO     | left removable region: 20
[2025-12-05 21:04:42] 2025-12-06 02:03:34,097 | INFO     | sum of square deviations: 80905851840.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,102 | INFO     | sum of deviations: 288986782274.00006
[2025-12-05 21:04:42] 2025-12-06 02:03:34,102 | INFO     | mean x: 1764966460.0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,102 | INFO     | mean y: 2279796.3411580594
[2025-12-05 21:04:42] 2025-12-06 02:03:34,102 | INFO     | intersect: -6301985797.519903
[2025-12-05 21:04:42] 2025-12-06 02:03:34,103 | INFO     | chi2: 0.07354291260867094
[2025-12-05 21:04:42] 2025-12-06 02:03:34,103 | INFO     | current memory leak: 3.57 B/s (using 639 data points, chi2=0.07)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,103 | INFO     | could have reported an average CPU frequency of 3111 MHz (26 samples)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,103 | INFO     | ..............................
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . Timing measurements:
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . get job = 0 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . initial setup = 3 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . payload setup = 5 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . stage-in = 0 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . payload execution = 40821 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . stage-out = 5 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | . log creation = 0 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,104 | INFO     | ..............................
[2025-12-05 21:04:42] 2025-12-06 02:03:34,241 | INFO     | time since job start (40859s) is within the limit (172800.0s)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,450 | INFO     | 
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | job summary report
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | --------------------------------------------------
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | PanDA job id: 6897488210
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | task id: 47556161
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | errors: (none)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | status: LOG_TRANSFER = DONE 
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | pilot state: finished 
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | transexitcode: 0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | exeerrorcode: 0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | exeerrordiag: 
[2025-12-05 21:04:42] 2025-12-06 02:03:34,451 | INFO     | exitcode: 0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | exitmsg: OK
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | cpuconsumptiontime: 162773 s
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | nevents: 1000
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | neventsw: 0
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | pid: 3380375
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | pgrp: 3380375
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | corecount: 4
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | event service: False
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | sizes: {0: 2284273, 4: 2284535, 11: 2284563, 40831: 2328317, 40838: 2337339, 40839: 2337395, 40843: 2337769}
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | --------------------------------------------------
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | 
[2025-12-05 21:04:42] 2025-12-06 02:03:34,452 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/8
[2025-12-05 21:04:42] 2025-12-06 02:03:34,477 | INFO     | queue jobs had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue data_out had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,478 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | queue completed_jobids has 1 job(s)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | queue messages had 0 job(s) [purged]
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | job 6897488210 has completed (purged errors)
[2025-12-05 21:04:42] 2025-12-06 02:03:34,479 | INFO     | overall cleanup function is called
[2025-12-05 21:04:42] 2025-12-06 02:03:35,495 | INFO     | --- collectZombieJob: --- 10, [3380375]
[2025-12-05 21:04:42] 2025-12-06 02:03:35,496 | INFO     | zombie collector waiting for pid 3380375
[2025-12-05 21:04:42] 2025-12-06 02:03:35,496 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-12-05 21:04:42] 2025-12-06 02:03:35,496 | INFO     | collected zombie processes
[2025-12-05 21:04:42] 2025-12-06 02:03:35,496 | INFO     | will attempt to kill all subprocesses of pid=3380375
[2025-12-05 21:04:42] 2025-12-06 02:03:35,708 | INFO     | process IDs to be killed: [3380375] (in reverse order)
[2025-12-05 21:04:42] 2025-12-06 02:03:35,777 | WARNING  | found no corresponding commands to process id(s)
[2025-12-05 21:04:42] 2025-12-06 02:03:35,777 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-12-05 21:04:42] 2025-12-06 02:03:35,785 | INFO     | did not find any defunct processes belonging to 3380375
[2025-12-05 21:04:42] 2025-12-06 02:03:35,791 | INFO     | did not find any defunct processes belonging to 3380375
[2025-12-05 21:04:42] 2025-12-06 02:03:35,792 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-12-05 21:04:42] 2025-12-06 02:03:35,792 | INFO     | ready for new job
[2025-12-05 21:04:42] 2025-12-06 02:03:35,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-12-05 21:04:42] 2025-12-06 02:03:35,797 | INFO     | ***************************************
[2025-12-05 21:04:42] 2025-12-06 02:03:35,797 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-12-05 21:04:42] 2025-12-06 02:03:35,797 | INFO     | ***************************************
[2025-12-05 21:04:42] 2025-12-06 02:03:35,797 | INFO     | 
[2025-12-05 21:04:42] 2025-12-06 02:03:35,800 | INFO     | architecture information:
[2025-12-05 21:04:42] 2025-12-06 02:03:35,801 | INFO     | executing command: cat /etc/os-release
[2025-12-05 21:04:42] 2025-12-06 02:03:35,819 | INFO     | cat /etc/os-release:
[2025-12-05 21:04:42] NAME="CentOS Linux"
[2025-12-05 21:04:42] VERSION="7 (Core)"
[2025-12-05 21:04:42] ID="centos"
[2025-12-05 21:04:42] ID_LIKE="rhel fedora"
[2025-12-05 21:04:42] VERSION_ID="7"
[2025-12-05 21:04:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 21:04:42] ANSI_COLOR="0;31"
[2025-12-05 21:04:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 21:04:42] HOME_URL="https://www.centos.org/"
[2025-12-05 21:04:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 21:04:42] 
[2025-12-05 21:04:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 21:04:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 21:04:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 21:04:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 21:04:42] 
[2025-12-05 21:04:42] 2025-12-06 02:03:35,820 | INFO     | ***************************************
[2025-12-05 21:04:42] 2025-12-06 02:03:36,323 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/8
[2025-12-05 21:04:42] 2025-12-06 02:03:36,344 | INFO     | sufficient remaining disk space (389378211840 B)
[2025-12-05 21:04:42] 2025-12-06 02:03:36,345 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 21:04:42] 2025-12-06 02:03:36,345 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 21:04:42] 2025-12-06 02:03:36,345 | INFO     | update_server=False
[2025-12-05 21:04:42] 2025-12-06 02:03:36,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 21:04:42] 2025-12-06 02:03:36,345 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 21:04:42] 2025-12-06 02:03:36,372 | INFO     | all job control threads have been joined
[2025-12-05 21:04:42] 2025-12-06 02:03:36,658 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-12-05 21:04:42] 2025-12-06 02:03:36,658 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-12-05 21:04:42] 2025-12-06 02:03:36,659 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 21:04:42] 2025-12-06 02:03:36,659 | INFO     | will abort loop
[2025-12-05 21:04:42] 2025-12-06 02:03:36,669 | INFO     | all payload control threads have been joined
[2025-12-05 21:04:42] 2025-12-06 02:03:36,878 | INFO     | all data control threads have been joined
[2025-12-05 21:04:42] 2025-12-06 02:03:37,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 21:04:42] 2025-12-06 02:03:37,350 | INFO     | [job] retrieve thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:37,378 | INFO     | [job] control thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:37,537 | INFO     | [payload] validate_post thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:37,664 | INFO     | [job] job monitor thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:37,675 | INFO     | [payload] control thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:37,884 | INFO     | [data] control thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:37,908 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:38,226 | INFO     | [job] validate thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:38,557 | INFO     | [data] copytool_in thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:38,565 | INFO     | [payload] failed_post thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:38,637 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:38,639 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:38,703 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:39,165 | INFO     | [data] copytool_out thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:39,176 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 21:04:42] 2025-12-06 02:03:40,182 | INFO     | [job] queue monitor thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:03:40,351 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 21:04:42] 2025-12-06 02:04:07,545 | INFO     | PID=3373580 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 21:04:42] 2025-12-06 02:04:07,545 | INFO     | .. there are 5 such processes running
[2025-12-05 21:04:42] 2025-12-06 02:04:07,546 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 21:04:42] 2025-12-06 02:04:07,546 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 21:04:42] 2025-12-06 02:04:07,546 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 21:04:42] 2025-12-06 02:04:36,168 | INFO     | [monitor] cgroup control has ended
[2025-12-05 21:04:42] 2025-12-06 02:04:37,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 125570108524352)>', '<ExcThread(monitor, started 125568871823104)>']
[2025-12-05 21:04:42] 2025-12-06 02:04:37,689 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 21:04:42] 2025-12-06 02:04:37,689 | INFO     | [monitor] control thread has ended
[2025-12-05 21:04:42] 2025-12-06 02:04:42,542 | INFO     | all workflow threads have been joined
[2025-12-05 21:04:42] 2025-12-06 02:04:42,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 21:04:42] 2025-12-06 02:04:42,543 | INFO     | traces error code: 0
[2025-12-05 21:04:42] 2025-12-06 02:04:42,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 21:04:42] 2025-12-06 02:04:42,677 [wrapper] ==== pilot stdout END ====
[2025-12-05 21:04:42] 2025-12-06 02:04:42,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 21:04:42] 2025-12-06 02:04:42,682 [wrapper] pilotpid: 3373580
[2025-12-05 21:04:42] 2025-12-06 02:04:42,685 [wrapper] Pilot exit status: 0
[2025-12-05 21:04:42] 2025-12-06 02:04:42,696 [wrapper] pandaids: 6897488210
[2025-12-05 21:04:42] 2025-12-06 02:04:42,754 [wrapper] cleanup supervisor_pilot 3924330 3373581
[2025-12-05 21:04:42] 2025-12-06 02:04:42,758 [wrapper] Test setup, not cleaning
[2025-12-05 21:04:42] 2025-12-06 02:04:42,761 [wrapper] apfmon messages muted
[2025-12-05 21:04:42] 2025-12-06 02:04:42,764 [wrapper] ==== wrapper stdout END ====
[2025-12-05 21:04:42] 2025-12-06 02:04:42,766 [wrapper] ==== wrapper stderr END ====
[2025-12-05 21:04:42]  *** Error codes and diagnostics ***
[2025-12-05 21:04:42]     "exeErrorCode": 0,
[2025-12-05 21:04:42]     "exeErrorDiag": "",
[2025-12-05 21:04:42]     "pilotErrorCode": 0,
[2025-12-05 21:04:42]     "pilotErrorDiag": "",
[2025-12-05 21:04:42]  *** Listing of results directory ***
[2025-12-05 21:04:42] total 1306716
[2025-12-05 21:04:42] -rw-r--r-- 1 whitlerd whitlerd    576529 Nov 25 11:48 pilot3.tar.gz
[2025-12-05 21:04:42] -rw-r--r-- 1 whitlerd whitlerd      5112 Nov 25 11:55 queuedata.json
[2025-12-05 21:04:42] -rwx------ 1 whitlerd whitlerd     36292 Nov 25 11:56 runpilot2-wrapper.sh
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd       100 Dec  5 09:42 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 21:04:42] -rwxr-xr-x 1 whitlerd whitlerd      7986 Dec  5 09:42 run_atlas
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd       105 Dec  5 09:42 job.xml
[2025-12-05 21:04:42] -rw-r--r-- 2 whitlerd whitlerd 407598242 Dec  5 09:42 EVNT.47483658._002264.pool.root.1
[2025-12-05 21:04:42] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec  5 09:42 start_atlas.sh
[2025-12-05 21:04:42] drwxrwx--x 2 whitlerd whitlerd      4096 Dec  5 09:42 shared
[2025-12-05 21:04:42] -rw-r--r-- 2 whitlerd whitlerd    590104 Dec  5 09:42 input.tar.gz
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd      9369 Dec  5 09:42 init_data.xml
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec  5 09:42 boinc_setup_complete
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd         0 Dec  5 09:42 boinc_lockfile
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd      2783 Dec  5 09:42 pandaJob.out
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd    985507 Dec  5 09:42 agis_schedconf.cvmfs.json
[2025-12-05 21:04:42] drwx------ 5 whitlerd whitlerd      4096 Dec  5 09:42 pilot3
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd       533 Dec  5 20:58 boinc_task_state.xml
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd 911994188 Dec  5 21:02 HITS.47556161._002471.pool.root.1
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd      1045 Dec  5 21:03 memory_monitor_summary.json
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd   1516240 Dec  5 21:03 agis_ddmendpoints.agis.ALL.json
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd   1471078 Dec  5 21:03 log.47556161._002471.job.log.tgz.1
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd      8582 Dec  5 21:03 heartbeat.json
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd        95 Dec  5 21:04 pilot_heartbeat.json
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd      8192 Dec  5 21:04 boinc_mmap_file
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd        29 Dec  5 21:04 wrapper_checkpoint.txt
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd      5024 Dec  5 21:04 pilotlog.txt
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd   5814555 Dec  5 21:04 log.47556161._002471.job.log.1
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd       353 Dec  5 21:04 output.list
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd       620 Dec  5 21:04 runtime_log
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd   7301120 Dec  5 21:04 result.tar.gz
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd       657 Dec  5 21:04 T8yKDm0VBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDSMKDmAvs8Un.diag
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd      9026 Dec  5 21:04 runtime_log.err
[2025-12-05 21:04:42] -rw-rw-r-- 1 whitlerd whitlerd     21344 Dec  5 21:04 stderr.txt
[2025-12-05 21:04:42] HITS file was successfully produced:
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd 911994188 Dec  5 21:02 shared/HITS.pool.root.1
[2025-12-05 21:04:42]  *** Contents of shared directory: ***
[2025-12-05 21:04:42] total 1296404
[2025-12-05 21:04:42] -rw-r--r-- 2 whitlerd whitlerd 407598242 Dec  5 09:42 ATLAS.root_0
[2025-12-05 21:04:42] -rw-r--r-- 2 whitlerd whitlerd     15847 Dec  5 09:42 start_atlas.sh
[2025-12-05 21:04:42] -rw-r--r-- 2 whitlerd whitlerd    590104 Dec  5 09:42 input.tar.gz
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd 911994188 Dec  5 21:02 HITS.pool.root.1
[2025-12-05 21:04:42] -rw------- 1 whitlerd whitlerd   7301120 Dec  5 21:04 result.tar.gz
21:04:44 (3369657): run_atlas exited; CPU time 162769.756801
21:04:44 (3369657): called boinc_finish(0)

</stderr_txt>
]]>

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