Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:19:10 (2034884): wrapper (7.7.26015): starting
12:19:10 (2034884): wrapper: running run_atlas (--nthreads 3)
[2025-12-05 12:19:10] Arguments: --nthreads 3
[2025-12-05 12:19:10] Threads: 3
[2025-12-05 12:19:10] Checking for CVMFS
[2025-12-05 12:19:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 12:19:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 12:19:10] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 12:19:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 12:19:10] 2.9.2.0 2923852 24305 104728 153649 0 56 20169503 36864000 0 130560 2 9175042 99.961 1006542 746 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 12:19:10] CVMFS is ok
[2025-12-05 12:19:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 12:19:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 12:19:10] Further information can be found at the LHC@home message board.
[2025-12-05 12:19:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 12:19:10] Checking for apptainer binary...
[2025-12-05 12:19:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 12:19:10] Running /usr/bin/apptainer --version
[2025-12-05 12:19:10] apptainer version 1.4.1-1.1
[2025-12-05 12:19:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 12:19:10] magicA161a
[2025-12-05 12:19:10] apptainer works
[2025-12-05 12:19:10] Set ATHENA_PROC_NUMBER=3
[2025-12-05 12:19:10] Set ATHENA_CORE_NUMBER=3
[2025-12-05 12:19:10] Starting ATLAS job with PandaID=6895380008
[2025-12-05 12:19:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 20:03:55]  *** The last 200 lines of the pilot log: ***
[2025-12-05 20:03:55] 2025-12-05 19:02:50,247 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 20:03:55] 2025-12-05 19:02:50,247 | INFO     | update_server=False
[2025-12-05 20:03:55] 2025-12-05 19:02:50,247 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 20:03:55] 2025-12-05 19:02:50,247 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 20:03:55] 2025-12-05 19:02:50,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 20:03:55] 2025-12-05 19:02:50,248 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 20:03:55] 2025-12-05 19:02:50,248 | INFO     | aborting loop
[2025-12-05 20:03:55] 2025-12-05 19:02:50,401 | INFO     | all payload control threads have been joined
[2025-12-05 20:03:55] 2025-12-05 19:02:50,753 | INFO     | all data control threads have been joined
[2025-12-05 20:03:55] 2025-12-05 19:02:51,253 | INFO     | [job] retrieve thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:51,253 | INFO     | [job] queue monitor thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:51,253 | INFO     | [job] job monitor thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:51,291 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:51,359 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 20:03:55] 2025-12-05 19:02:51,391 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:51,407 | INFO     | [payload] control thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:51,510 | INFO     | [payload] failed_post thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:51,732 | INFO     | all job control threads have been joined
[2025-12-05 20:03:55] 2025-12-05 19:02:51,759 | INFO     | [data] control thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:52,039 | INFO     | [payload] validate_post thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:52,135 | INFO     | [data] copytool_in thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:52,650 | INFO     | [job] validate thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:52,707 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:52,737 | INFO     | [job] control thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:53,365 | INFO     | [data] copytool_out thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:02:54,255 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:03:01,292 | INFO     | job.realtimelogging is not enabled
[2025-12-05 20:03:55] 2025-12-05 19:03:02,298 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 20:03:55] 2025-12-05 19:03:20,215 | INFO     | PID=2038614 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 20:03:55] 2025-12-05 19:03:20,215 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 20:03:55] 2025-12-05 19:03:20,215 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 20:03:55] 2025-12-05 19:03:20,215 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 20:03:55] 2025-12-05 19:03:49,196 | INFO     | [monitor] cgroup control has ended
[2025-12-05 20:03:55] 2025-12-05 19:03:50,335 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139997654153024)>', '<ExcThread(monitor, started 139996807821056)>']
[2025-12-05 20:03:55] 2025-12-05 19:03:50,364 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 20:03:55] 2025-12-05 19:03:50,364 | INFO     | [monitor] control thread has ended
[2025-12-05 20:03:55] 2025-12-05 19:03:55,340 | INFO     | all workflow threads have been joined
[2025-12-05 20:03:55] 2025-12-05 19:03:55,341 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 20:03:55] 2025-12-05 19:03:55,341 | INFO     | traces error code: 0
[2025-12-05 20:03:55] 2025-12-05 19:03:55,341 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 20:03:55] 2025-12-05 19:03:55,392 [wrapper] ==== pilot stdout END ====
[2025-12-05 20:03:55] 2025-12-05 19:03:55,394 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 20:03:55] 2025-12-05 19:03:55,397 [wrapper] pilotpid: 2038614
[2025-12-05 20:03:55] 2025-12-05 19:03:55,399 [wrapper] Pilot exit status: 0
[2025-12-05 20:03:55] 2025-12-05 19:03:55,406 [wrapper] pandaids: 6895380008
[2025-12-05 20:03:55] 2025-12-05 19:03:55,422 [wrapper] cleanup supervisor_pilot 2092013 2038615
[2025-12-05 20:03:55] 2025-12-05 19:03:55,425 [wrapper] Test setup, not cleaning
[2025-12-05 20:03:55] 2025-12-05 19:03:55,427 [wrapper] apfmon messages muted
[2025-12-05 20:03:55] 2025-12-05 19:03:55,429 [wrapper] ==== wrapper stdout END ====
[2025-12-05 20:03:55] 2025-12-05 19:03:55,431 [wrapper] ==== wrapper stderr END ====
[2025-12-05 20:03:55]  *** Error codes and diagnostics ***
[2025-12-05 20:03:55]     "exeErrorCode": 0,
[2025-12-05 20:03:55]     "exeErrorDiag": "",
[2025-12-05 20:03:55]     "pilotErrorCode": 0,
[2025-12-05 20:03:55]     "pilotErrorDiag": "",
[2025-12-05 20:03:55]  *** Listing of results directory ***
[2025-12-05 20:03:55] total 1305396
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc    576529 Nov 24 03:30 pilot3.tar.gz
[2025-12-05 20:03:55] -rwx------ 1 boinc boinc     36292 Nov 24 03:35 runpilot2-wrapper.sh
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc      5112 Nov 24 03:35 queuedata.json
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc       100 Dec  5 12:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 20:03:55] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 12:19 run_atlas
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc       105 Dec  5 12:19 job.xml
[2025-12-05 20:03:55] -rw-r--r-- 2 boinc boinc 412448763 Dec  5 12:19 EVNT.47483658._000984.pool.root.1
[2025-12-05 20:03:55] -rw-r--r-- 2 boinc boinc    590097 Dec  5 12:19 input.tar.gz
[2025-12-05 20:03:55] -rw-r--r-- 2 boinc boinc     15847 Dec  5 12:19 start_atlas.sh
[2025-12-05 20:03:55] drwxrwx--x 2 boinc boinc      4096 Dec  5 12:19 shared
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc         0 Dec  5 12:19 boinc_setup_complete
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc      6449 Dec  5 12:19 init_data.xml
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc         0 Dec  5 12:19 boinc_lockfile
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc      2782 Dec  5 12:19 pandaJob.out
[2025-12-05 20:03:55] -rw------- 1 boinc boinc    985507 Dec  5 12:19 agis_schedconf.cvmfs.json
[2025-12-05 20:03:55] drwx------ 5 boinc boinc      4096 Dec  5 12:19 pilot3
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc       531 Dec  5 19:58 boinc_task_state.xml
[2025-12-05 20:03:55] -rw------- 1 boinc boinc 910240662 Dec  5 20:02 HITS.47556137._009701.pool.root.1
[2025-12-05 20:03:55] -rw------- 1 boinc boinc        95 Dec  5 20:02 pilot_heartbeat.json
[2025-12-05 20:03:55] -rw------- 1 boinc boinc      1018 Dec  5 20:02 memory_monitor_summary.json
[2025-12-05 20:03:55] -rw------- 1 boinc boinc   1516240 Dec  5 20:02 agis_ddmendpoints.agis.ALL.json
[2025-12-05 20:03:55] -rw------- 1 boinc boinc   1153819 Dec  5 20:02 log.47556137._009701.job.log.tgz.1
[2025-12-05 20:03:55] -rw------- 1 boinc boinc      8562 Dec  5 20:02 heartbeat.json
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc      8192 Dec  5 20:03 boinc_mmap_file
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc        28 Dec  5 20:03 wrapper_checkpoint.txt
[2025-12-05 20:03:55] -rw------- 1 boinc boinc      4824 Dec  5 20:03 pilotlog.txt
[2025-12-05 20:03:55] -rw------- 1 boinc boinc   3919342 Dec  5 20:03 log.47556137._009701.job.log.1
[2025-12-05 20:03:55] -rw------- 1 boinc boinc       353 Dec  5 20:03 output.list
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc       620 Dec  5 20:03 runtime_log
[2025-12-05 20:03:55] -rw------- 1 boinc boinc   5089280 Dec  5 20:03 result.tar.gz
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc      8918 Dec  5 20:03 runtime_log.err
[2025-12-05 20:03:55] -rw------- 1 boinc boinc       669 Dec  5 20:03 j1UKDmhbbh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6LLKDmnV6PEo.diag
[2025-12-05 20:03:55] -rw-r--r-- 1 boinc boinc      7618 Dec  5 20:03 stderr.txt
[2025-12-05 20:03:55] HITS file was successfully produced:
[2025-12-05 20:03:55] -rw------- 1 boinc boinc 910240662 Dec  5 20:02 shared/HITS.pool.root.1
[2025-12-05 20:03:55]  *** Contents of shared directory: ***
[2025-12-05 20:03:55] total 1297268
[2025-12-05 20:03:55] -rw-r--r-- 2 boinc boinc 412448763 Dec  5 12:19 ATLAS.root_0
[2025-12-05 20:03:55] -rw-r--r-- 2 boinc boinc    590097 Dec  5 12:19 input.tar.gz
[2025-12-05 20:03:55] -rw-r--r-- 2 boinc boinc     15847 Dec  5 12:19 start_atlas.sh
[2025-12-05 20:03:55] -rw------- 1 boinc boinc 910240662 Dec  5 20:02 HITS.pool.root.1
[2025-12-05 20:03:55] -rw------- 1 boinc boinc   5089280 Dec  5 20:03 result.tar.gz
20:03:56 (2034884): run_atlas exited; CPU time 82027.785996
20:03:56 (2034884): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN