Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:52:46 (2009786): wrapper (7.7.26015): starting
10:52:46 (2009786): wrapper: running run_atlas (--nthreads 3)
[2025-12-05 10:52:46] Arguments: --nthreads 3
[2025-12-05 10:52:46] Threads: 3
[2025-12-05 10:52:46] Checking for CVMFS
[2025-12-05 10:52:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-12-05 10:52:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-12-05 10:52:46] Running cvmfs_config stat atlas.cern.ch
[2025-12-05 10:52:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-12-05 10:52:46] 2.9.2.0 2923852 24218 98524 153646 2 68 20146836 36864001 0 130560 2 9109100 99.960 1001161 742 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-12-05 10:52:46] CVMFS is ok
[2025-12-05 10:52:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-12-05 10:52:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-12-05 10:52:46] Further information can be found at the LHC@home message board.
[2025-12-05 10:52:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-12-05 10:52:46] Checking for apptainer binary...
[2025-12-05 10:52:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-12-05 10:52:46] Running /usr/bin/apptainer --version
[2025-12-05 10:52:46] apptainer version 1.4.1-1.1
[2025-12-05 10:52:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-12-05 10:52:46] magicA161a
[2025-12-05 10:52:46] apptainer works
[2025-12-05 10:52:46] Set ATHENA_PROC_NUMBER=3
[2025-12-05 10:52:46] Set ATHENA_CORE_NUMBER=3
[2025-12-05 10:52:46] Starting ATLAS job with PandaID=6908987525
[2025-12-05 10:52:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-12-05 12:19:06]  *** The last 200 lines of the pilot log: ***
[2025-12-05 12:19:06] 2025-12-05 11:18:31,165 | INFO     | executing command: cat /etc/os-release
[2025-12-05 12:19:06] 2025-12-05 11:18:31,173 | INFO     | cat /etc/os-release:
[2025-12-05 12:19:06] NAME="CentOS Linux"
[2025-12-05 12:19:06] VERSION="7 (Core)"
[2025-12-05 12:19:06] ID="centos"
[2025-12-05 12:19:06] ID_LIKE="rhel fedora"
[2025-12-05 12:19:06] VERSION_ID="7"
[2025-12-05 12:19:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-12-05 12:19:06] ANSI_COLOR="0;31"
[2025-12-05 12:19:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-12-05 12:19:06] HOME_URL="https://www.centos.org/"
[2025-12-05 12:19:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-12-05 12:19:06] 
[2025-12-05 12:19:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-12-05 12:19:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-12-05 12:19:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-12-05 12:19:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-12-05 12:19:06] 
[2025-12-05 12:19:06] 2025-12-05 11:18:31,173 | INFO     | ***************************************
[2025-12-05 12:19:06] 2025-12-05 11:18:31,676 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-12-05 12:19:06] 2025-12-05 11:18:31,689 | INFO     | sufficient remaining disk space (385983971328 B)
[2025-12-05 12:19:06] 2025-12-05 11:18:31,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-12-05 12:19:06] 2025-12-05 11:18:31,689 | INFO     | current server update state: UPDATING_FINAL
[2025-12-05 12:19:06] 2025-12-05 11:18:31,689 | INFO     | update_server=False
[2025-12-05 12:19:06] 2025-12-05 11:18:31,689 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-12-05 12:19:06] 2025-12-05 11:18:31,689 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-12-05 12:19:06] 2025-12-05 11:18:31,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-12-05 12:19:06] 2025-12-05 11:18:31,690 | INFO     | aborting loop
[2025-12-05 12:19:06] 2025-12-05 11:18:32,013 | INFO     | all payload control threads have been joined
[2025-12-05 12:19:06] 2025-12-05 11:18:32,241 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-12-05 12:19:06] 2025-12-05 11:18:32,439 | INFO     | all job control threads have been joined
[2025-12-05 12:19:06] 2025-12-05 11:18:32,630 | INFO     | all data control threads have been joined
[2025-12-05 12:19:06] 2025-12-05 11:18:32,695 | INFO     | [job] retrieve thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:32,695 | INFO     | [job] queue monitor thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:32,695 | INFO     | [job] job monitor thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:32,706 | INFO     | [payload] run_realtimelog thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:33,018 | INFO     | [payload] control thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:33,253 | INFO     | [payload] validate_post thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:33,323 | INFO     | [data] copytool_in thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:33,445 | INFO     | [job] control thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:33,635 | INFO     | [data] control thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:33,844 | INFO     | [job] validate thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:33,981 | INFO     | [job] create_data_payload thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:34,043 | INFO     | [payload] validate_pre thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:34,047 | INFO     | [payload] failed_post thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:34,121 | INFO     | [payload] execute_payloads thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:34,247 | INFO     | [data] copytool_out thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:34,765 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-12-05 12:19:06] 2025-12-05 11:18:38,768 | INFO     | [data] queue_monitor thread has finished
[2025-12-05 12:19:06] 2025-12-05 11:18:59,271 | INFO     | [monitor] cgroup control has ended
[2025-12-05 12:19:06] 2025-12-05 11:19:00,857 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140172438267712)>', '<ExcThread(monitor, started 140171819345664)>']
[2025-12-05 12:19:06] 2025-12-05 11:19:02,719 | INFO     | PID=2013509 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-12-05 12:19:06] 2025-12-05 11:19:02,719 | INFO     | found 0 job(s) in 20 queues
[2025-12-05 12:19:06] 2025-12-05 11:19:02,719 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-12-05 12:19:06] 2025-12-05 11:19:02,719 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-12-05 12:19:06] 2025-12-05 11:19:02,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-12-05 12:19:06] 2025-12-05 11:19:02,719 | INFO     | [monitor] control thread has ended
[2025-12-05 12:19:06] 2025-12-05 11:19:05,883 | INFO     | all workflow threads have been joined
[2025-12-05 12:19:06] 2025-12-05 11:19:05,883 | INFO     | end of generic workflow (traces error code: 0)
[2025-12-05 12:19:06] 2025-12-05 11:19:05,883 | INFO     | traces error code: 0
[2025-12-05 12:19:06] 2025-12-05 11:19:05,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-12-05 12:19:06] 2025-12-05 11:19:05,933 [wrapper] ==== pilot stdout END ====
[2025-12-05 12:19:06] 2025-12-05 11:19:05,935 [wrapper] ==== wrapper stdout RESUME ====
[2025-12-05 12:19:06] 2025-12-05 11:19:05,938 [wrapper] pilotpid: 2013509
[2025-12-05 12:19:06] 2025-12-05 11:19:05,940 [wrapper] Pilot exit status: 0
[2025-12-05 12:19:06] 2025-12-05 11:19:05,947 [wrapper] pandaids: 6908987525
[2025-12-05 12:19:06] 2025-12-05 11:19:05,963 [wrapper] cleanup supervisor_pilot 2031831 2013510
[2025-12-05 12:19:06] 2025-12-05 11:19:05,965 [wrapper] Test setup, not cleaning
[2025-12-05 12:19:06] 2025-12-05 11:19:05,967 [wrapper] apfmon messages muted
[2025-12-05 12:19:06] 2025-12-05 11:19:05,970 [wrapper] ==== wrapper stdout END ====
[2025-12-05 12:19:06] 2025-12-05 11:19:05,972 [wrapper] ==== wrapper stderr END ====
[2025-12-05 12:19:06]  *** Error codes and diagnostics ***
[2025-12-05 12:19:06]     "exeErrorCode": 0,
[2025-12-05 12:19:06]     "exeErrorDiag": "",
[2025-12-05 12:19:06]     "pilotErrorCode": 0,
[2025-12-05 12:19:06]     "pilotErrorDiag": "",
[2025-12-05 12:19:06]  *** Listing of results directory ***
[2025-12-05 12:19:06] total 456172
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc    576529 Nov 30 12:05 pilot3.tar.gz
[2025-12-05 12:19:06] -rwx------ 1 boinc boinc     36292 Nov 30 12:08 runpilot2-wrapper.sh
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc      5112 Nov 30 12:08 queuedata.json
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc       100 Dec  5 10:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-12-05 12:19:06] -rwxr-xr-x 1 boinc boinc      7986 Dec  5 10:52 run_atlas
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc       105 Dec  5 10:52 job.xml
[2025-12-05 12:19:06] -rw-r--r-- 2 boinc boinc 272695897 Dec  5 10:52 EVNT.46965009._000064.pool.root.1
[2025-12-05 12:19:06] -rw-r--r-- 2 boinc boinc    589973 Dec  5 10:52 input.tar.gz
[2025-12-05 12:19:06] -rw-r--r-- 2 boinc boinc     15847 Dec  5 10:52 start_atlas.sh
[2025-12-05 12:19:06] drwxrwx--x 2 boinc boinc      4096 Dec  5 10:52 shared
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc         0 Dec  5 10:52 boinc_setup_complete
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc      6449 Dec  5 10:52 init_data.xml
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc         0 Dec  5 10:52 boinc_lockfile
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc      2652 Dec  5 10:52 pandaJob.out
[2025-12-05 12:19:06] -rw------- 1 boinc boinc    973673 Dec  5 10:52 agis_schedconf.cvmfs.json
[2025-12-05 12:19:06] -rw------- 1 boinc boinc   1516240 Dec  5 10:52 agis_ddmendpoints.agis.ALL.json
[2025-12-05 12:19:06] drwx------ 5 boinc boinc      4096 Dec  5 10:52 pilot3
[2025-12-05 12:19:06] -rw------- 1 boinc boinc 188490412 Dec  5 12:18 HITS.46965017._001668.pool.root.1
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc       529 Dec  5 12:18 boinc_task_state.xml
[2025-12-05 12:19:06] -rw------- 1 boinc boinc        95 Dec  5 12:18 pilot_heartbeat.json
[2025-12-05 12:19:06] -rw------- 1 boinc boinc      1016 Dec  5 12:18 memory_monitor_summary.json
[2025-12-05 12:19:06] -rw------- 1 boinc boinc    268766 Dec  5 12:18 log.46965017._001668.job.log.tgz.1
[2025-12-05 12:19:06] -rw------- 1 boinc boinc      7752 Dec  5 12:18 heartbeat.json
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc      8192 Dec  5 12:18 boinc_mmap_file
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc        27 Dec  5 12:18 wrapper_checkpoint.txt
[2025-12-05 12:19:06] -rw------- 1 boinc boinc      4752 Dec  5 12:19 pilotlog.txt
[2025-12-05 12:19:06] -rw------- 1 boinc boinc    755566 Dec  5 12:19 log.46965017._001668.job.log.1
[2025-12-05 12:19:06] -rw------- 1 boinc boinc       357 Dec  5 12:19 output.list
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc       620 Dec  5 12:19 runtime_log
[2025-12-05 12:19:06] -rw------- 1 boinc boinc   1044480 Dec  5 12:19 result.tar.gz
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc      8917 Dec  5 12:19 runtime_log.err
[2025-12-05 12:19:06] -rw------- 1 boinc boinc       662 Dec  5 12:19 2qMNDmSTuj8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmEePKDmqtT9Nn.diag
[2025-12-05 12:19:06] -rw-r--r-- 1 boinc boinc      8890 Dec  5 12:19 stderr.txt
[2025-12-05 12:19:06] HITS file was successfully produced:
[2025-12-05 12:19:06] -rw------- 1 boinc boinc 188490412 Dec  5 12:18 shared/HITS.pool.root.1
[2025-12-05 12:19:06]  *** Contents of shared directory: ***
[2025-12-05 12:19:06] total 452008
[2025-12-05 12:19:06] -rw-r--r-- 2 boinc boinc 272695897 Dec  5 10:52 ATLAS.root_0
[2025-12-05 12:19:06] -rw-r--r-- 2 boinc boinc    589973 Dec  5 10:52 input.tar.gz
[2025-12-05 12:19:06] -rw-r--r-- 2 boinc boinc     15847 Dec  5 10:52 start_atlas.sh
[2025-12-05 12:19:06] -rw------- 1 boinc boinc 188490412 Dec  5 12:18 HITS.pool.root.1
[2025-12-05 12:19:06] -rw------- 1 boinc boinc   1044480 Dec  5 12:19 result.tar.gz
12:19:07 (2009786): run_atlas exited; CPU time 14755.315626
12:19:07 (2009786): called boinc_finish(0)

</stderr_txt>
]]>

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